//
// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
// Any modifications to this file will be lost upon recompilation of the source schema. 
// Generated on: 2019.04.05 at 08:01:44 AM BST 
//

package jalview.xml.binding.uniprot;

import java.util.ArrayList;
import java.util.List;
import javax.xml.bind.annotation.XmlAccessType;
import javax.xml.bind.annotation.XmlAccessorType;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlType;

/**
 * Describes the source organism.
 * 
 * <p>
 * Java class for organismType complex type.
 * 
 * <p>
 * The following schema fragment specifies the expected content contained within
 * this class.
 * 
 * <pre>
 * &lt;complexType name="organismType">
 *   &lt;complexContent>
 *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
 *       &lt;sequence>
 *         &lt;element name="name" type="{http://uniprot.org/uniprot}organismNameType" maxOccurs="unbounded"/>
 *         &lt;element name="dbReference" type="{http://uniprot.org/uniprot}dbReferenceType" maxOccurs="unbounded"/>
 *         &lt;element name="lineage" minOccurs="0">
 *           &lt;complexType>
 *             &lt;complexContent>
 *               &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
 *                 &lt;sequence>
 *                   &lt;element name="taxon" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/>
 *                 &lt;/sequence>
 *               &lt;/restriction>
 *             &lt;/complexContent>
 *           &lt;/complexType>
 *         &lt;/element>
 *       &lt;/sequence>
 *       &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
 *     &lt;/restriction>
 *   &lt;/complexContent>
 * &lt;/complexType>
 * </pre>
 * 
 * 
 */
@XmlAccessorType(XmlAccessType.FIELD)
@XmlType(
  name = "organismType",
  propOrder =
  { "name", "dbReference", "lineage" })
public class OrganismType
{

  @XmlElement(required = true)
  protected List<OrganismNameType> name;

  @XmlElement(required = true)
  protected List<DbReferenceType> dbReference;

  protected OrganismType.Lineage lineage;

  @XmlAttribute(name = "evidence")
  protected List<Integer> evidence;

  /**
   * Gets the value of the name property.
   * 
   * <p>
   * This accessor method returns a reference to the live list, not a snapshot.
   * Therefore any modification you make to the returned list will be present
   * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
   * for the name property.
   * 
   * <p>
   * For example, to add a new item, do as follows:
   * 
   * <pre>
   * getName().add(newItem);
   * </pre>
   * 
   * 
   * <p>
   * Objects of the following type(s) are allowed in the list
   * {@link OrganismNameType }
   * 
   * 
   */
  public List<OrganismNameType> getName()
  {
    if (name == null)
    {
      name = new ArrayList<OrganismNameType>();
    }
    return this.name;
  }

  /**
   * Gets the value of the dbReference property.
   * 
   * <p>
   * This accessor method returns a reference to the live list, not a snapshot.
   * Therefore any modification you make to the returned list will be present
   * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
   * for the dbReference property.
   * 
   * <p>
   * For example, to add a new item, do as follows:
   * 
   * <pre>
   * getDbReference().add(newItem);
   * </pre>
   * 
   * 
   * <p>
   * Objects of the following type(s) are allowed in the list
   * {@link DbReferenceType }
   * 
   * 
   */
  public List<DbReferenceType> getDbReference()
  {
    if (dbReference == null)
    {
      dbReference = new ArrayList<DbReferenceType>();
    }
    return this.dbReference;
  }

  /**
   * Gets the value of the lineage property.
   * 
   * @return possible object is {@link OrganismType.Lineage }
   * 
   */
  public OrganismType.Lineage getLineage()
  {
    return lineage;
  }

  /**
   * Sets the value of the lineage property.
   * 
   * @param value
   *          allowed object is {@link OrganismType.Lineage }
   * 
   */
  public void setLineage(OrganismType.Lineage value)
  {
    this.lineage = value;
  }

  /**
   * Gets the value of the evidence property.
   * 
   * <p>
   * This accessor method returns a reference to the live list, not a snapshot.
   * Therefore any modification you make to the returned list will be present
   * inside the JAXB object. This is why there is not a <CODE>set</CODE> method
   * for the evidence property.
   * 
   * <p>
   * For example, to add a new item, do as follows:
   * 
   * <pre>
   * getEvidence().add(newItem);
   * </pre>
   * 
   * 
   * <p>
   * Objects of the following type(s) are allowed in the list {@link Integer }
   * 
   * 
   */
  public List<Integer> getEvidence()
  {
    if (evidence == null)
    {
      evidence = new ArrayList<Integer>();
    }
    return this.evidence;
  }

  /**
   * <p>
   * Java class for anonymous complex type.
   * 
   * <p>
   * The following schema fragment specifies the expected content contained
   * within this class.
   * 
   * <pre>
   * &lt;complexType>
   *   &lt;complexContent>
   *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
   *       &lt;sequence>
   *         &lt;element name="taxon" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"/>
   *       &lt;/sequence>
   *     &lt;/restriction>
   *   &lt;/complexContent>
   * &lt;/complexType>
   * </pre>
   * 
   * 
   */
  @XmlAccessorType(XmlAccessType.FIELD)
  @XmlType(name = "", propOrder = { "taxon" })
  public static class Lineage
  {

    @XmlElement(required = true)
    protected List<String> taxon;

    /**
     * Gets the value of the taxon property.
     * 
     * <p>
     * This accessor method returns a reference to the live list, not a
     * snapshot. Therefore any modification you make to the returned list will
     * be present inside the JAXB object. This is why there is not a
     * <CODE>set</CODE> method for the taxon property.
     * 
     * <p>
     * For example, to add a new item, do as follows:
     * 
     * <pre>
     * getTaxon().add(newItem);
     * </pre>
     * 
     * 
     * <p>
     * Objects of the following type(s) are allowed in the list {@link String }
     * 
     * 
     */
    public List<String> getTaxon()
    {
      if (taxon == null)
      {
        taxon = new ArrayList<String>();
      }
      return this.taxon;
    }

  }

}
