/*
 * Jalview - A Sequence Alignment Editor and Viewer (2.11.2.6)
 * Copyright (C) 2023 The Jalview Authors
 * 
 * This file is part of Jalview.
 * 
 * Jalview is free software: you can redistribute it and/or
 * modify it under the terms of the GNU General Public License 
 * as published by the Free Software Foundation, either version 3
 * of the License, or (at your option) any later version.
 *  
 * Jalview is distributed in the hope that it will be useful, but 
 * WITHOUT ANY WARRANTY; without even the implied warranty 
 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
 * PURPOSE.  See the GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License
 * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
 * The Jalview Authors are detailed in the 'AUTHORS' file.
 */
package jalview.appletgui;

import jalview.datamodel.SequenceI;
import jalview.viewmodel.ViewportListenerI;
import jalview.viewmodel.ViewportRanges;

import java.awt.Color;
import java.awt.Font;
import java.awt.Graphics;
import java.awt.Image;
import java.awt.Panel;
import java.beans.PropertyChangeEvent;
import java.util.List;

public class IdCanvas extends Panel implements ViewportListenerI
{
  protected AlignViewport av;

  protected boolean showScores = true;

  protected int maxIdLength = -1;

  protected String maxIdStr = null;

  Image image;

  Graphics gg;

  int imgHeight = 0;

  boolean fastPaint = false;

  List<SequenceI> searchResults;

  public IdCanvas(AlignViewport av)
  {
    setLayout(null);
    this.av = av;
    PaintRefresher.Register(this, av.getSequenceSetId());
    av.getRanges().addPropertyChangeListener(this);
  }

  public void drawIdString(Graphics gg, boolean hiddenRows, SequenceI s,
          int i, int starty, int ypos)
  {
    int charHeight = av.getCharHeight();

    if (searchResults != null && searchResults.contains(s))
    {
      gg.setColor(Color.black);
      gg.fillRect(0, ((i - starty) * charHeight) + ypos, getSize().width,
              charHeight);
      gg.setColor(Color.white);
    }
    else if (av.getSelectionGroup() != null
            && av.getSelectionGroup().getSequences(null).contains(s))
    {
      gg.setColor(Color.lightGray);
      gg.fillRect(0, ((i - starty) * charHeight) + ypos, getSize().width,
              charHeight);
      gg.setColor(Color.white);
    }
    else
    {
      gg.setColor(av.getSequenceColour(s));
      gg.fillRect(0, ((i - starty) * charHeight) + ypos, getSize().width,
              charHeight);
      gg.setColor(Color.black);
    }

    gg.drawString(s.getDisplayId(av.getShowJVSuffix()), 0,
            ((i - starty) * charHeight) + ypos + charHeight
                    - (charHeight / 5));

    if (hiddenRows)
    {
      drawMarker(i, starty, ypos);
    }

  }

  public void fastPaint(int vertical)
  {
    if (gg == null || av.getWrapAlignment())
    {
      repaint();
      return;
    }

    ViewportRanges ranges = av.getRanges();

    gg.copyArea(0, 0, getSize().width, imgHeight, 0,
            -vertical * av.getCharHeight());

    int ss = ranges.getStartSeq(), es = ranges.getEndSeq(), transY = 0;
    if (vertical > 0) // scroll down
    {
      ss = es - vertical;
      if (ss < ranges.getStartSeq()) // ie scrolling too fast, more than a page
                                     // at a
      // time
      {
        ss = ranges.getStartSeq();
      }
      else
      {
        transY = imgHeight - ((vertical + 1) * av.getCharHeight());
      }
    }
    else if (vertical < 0)
    {
      es = ss - vertical;
      if (es > ranges.getEndSeq())
      {
        es = ranges.getEndSeq();
      }
    }

    gg.translate(0, transY);

    drawIds(ss, es);

    gg.translate(0, -transY);

    fastPaint = true;
    repaint();
  }

  @Override
  public void update(Graphics g)
  {
    paint(g);
  }

  @Override
  public void paint(Graphics g)
  {
    if (getSize().height < 0 || getSize().width < 0)
    {
      return;
    }
    if (fastPaint)
    {
      fastPaint = false;
      g.drawImage(image, 0, 0, this);
      return;
    }

    imgHeight = getSize().height;
    imgHeight -= imgHeight % av.getCharHeight();

    if (imgHeight < 1)
    {
      return;
    }

    if (image == null || imgHeight != image.getHeight(this))
    {
      image = createImage(getSize().width, imgHeight);
      gg = image.getGraphics();
      gg.setFont(av.getFont());
    }

    // Fill in the background
    gg.setColor(Color.white);
    Font italic = new Font(av.getFont().getName(), Font.ITALIC,
            av.getFont().getSize());
    gg.setFont(italic);

    gg.fillRect(0, 0, getSize().width, getSize().height);
    drawIds(av.getRanges().getStartSeq(), av.getRanges().getEndSeq());
    g.drawImage(image, 0, 0, this);
  }

  /**
   * local copy of av.getCharHeight set at top of drawIds
   */
  private int avcharHeight;

  void drawIds(int starty, int endy)
  {
    avcharHeight = av.getCharHeight();

    Color currentColor = Color.white;
    Color currentTextColor = Color.black;

    final boolean doHiddenCheck = av.isDisplayReferenceSeq()
            || av.hasHiddenRows();
    boolean hiddenRows = av.hasHiddenRows() && av.getShowHiddenMarkers();

    if (av.getWrapAlignment())
    {
      drawIdsWrapped(starty, doHiddenCheck, hiddenRows);
      return;
    }

    // Now draw the id strings
    SequenceI seq;
    for (int i = starty; i <= endy; i++)
    {
      seq = av.getAlignment().getSequenceAt(i);
      if (seq == null)
      {
        continue;
      }
      // hardwired italic IDs in applet currently
      Font italic = new Font(av.getFont().getName(), Font.ITALIC,
              av.getFont().getSize());
      gg.setFont(italic);
      // boolean isrep=false;
      if (doHiddenCheck)
      {
        // isrep =
        setHiddenFont(seq);
      }

      // Selected sequence colours
      if ((searchResults != null) && searchResults.contains(seq))
      {
        currentColor = Color.black;
        currentTextColor = Color.white;
      }
      else if ((av.getSelectionGroup() != null)
              && av.getSelectionGroup().getSequences(null).contains(seq))
      {
        currentColor = Color.lightGray;
        currentTextColor = Color.black;
      }
      else
      {
        currentColor = av.getSequenceColour(seq);
        currentTextColor = Color.black;
      }

      gg.setColor(currentColor);
      // TODO: isrep could be used to highlight the representative in a
      // different way
      gg.fillRect(0, (i - starty) * avcharHeight, getSize().width,
              avcharHeight);
      gg.setColor(currentTextColor);

      gg.drawString(seq.getDisplayId(av.getShowJVSuffix()), 0,
              (((i - starty) * avcharHeight) + avcharHeight)
                      - (avcharHeight / 5));

      if (hiddenRows)
      {
        drawMarker(i, starty, 0);
      }
    }
  }

  /**
   * Draws sequence ids in wrapped mode
   * 
   * @param starty
   * @param doHiddenCheck
   * @param hiddenRows
   */
  protected void drawIdsWrapped(int starty, final boolean doHiddenCheck,
          boolean hiddenRows)
  {
    int maxwidth = av.getAlignment().getVisibleWidth();
    int alheight = av.getAlignment().getHeight();

    int annotationHeight = 0;
    AnnotationLabels labels = null;

    if (av.isShowAnnotation())
    {
      AnnotationPanel ap = new AnnotationPanel(av);
      annotationHeight = ap.adjustPanelHeight();
      labels = new AnnotationLabels(av);
    }
    int hgap = avcharHeight;
    if (av.getScaleAboveWrapped())
    {
      hgap += avcharHeight;
    }

    int cHeight = alheight * avcharHeight + hgap + annotationHeight;

    int rowSize = av.getRanges().getViewportWidth();

    // hardwired italic IDs in applet currently
    Font italic = new Font(av.getFont().getName(), Font.ITALIC,
            av.getFont().getSize());
    gg.setFont(italic);

    /*
     * draw repeating sequence ids until out of sequence data or
     * out of visible space, whichever comes first
     */
    int ypos = hgap;
    int row = av.getRanges().getStartRes();
    while ((ypos <= getHeight()) && (row < maxwidth))
    {
      for (int i = starty; i < alheight; i++)
      {

        SequenceI s = av.getAlignment().getSequenceAt(i);
        // gg.setFont(italic);
        if (doHiddenCheck)
        {
          setHiddenFont(s);
        }
        drawIdString(gg, hiddenRows, s, i, 0, ypos);
      }

      if (labels != null)
      {
        gg.translate(0, ypos + (alheight * avcharHeight));
        labels.drawComponent(gg, getSize().width);
        gg.translate(0, -ypos - (alheight * avcharHeight));
      }
      ypos += cHeight;
      row += rowSize;
    }
  }

  public void setHighlighted(List<SequenceI> list)
  {
    searchResults = list;
    repaint();
  }

  void drawMarker(int i, int starty, int yoffset)
  {
    SequenceI[] hseqs = av.getAlignment()
            .getHiddenSequences().hiddenSequences;
    // Use this method here instead of calling hiddenSeq adjust
    // 3 times.
    int hSize = hseqs.length;

    int hiddenIndex = i;
    int lastIndex = i - 1;
    int nextIndex = i + 1;

    for (int j = 0; j < hSize; j++)
    {
      if (hseqs[j] != null)
      {
        if (j - 1 < hiddenIndex)
        {
          hiddenIndex++;
        }
        if (j - 1 < lastIndex)
        {
          lastIndex++;
        }
        if (j - 1 < nextIndex)
        {
          nextIndex++;
        }
      }
    }

    boolean below = (hiddenIndex > lastIndex + 1);
    boolean above = (nextIndex > hiddenIndex + 1);

    gg.setColor(Color.blue);
    if (below)
    {
      gg.fillPolygon(
              new int[]
              { getSize().width - avcharHeight,
                  getSize().width - avcharHeight, getSize().width },
              new int[]
              { (i - starty) * avcharHeight + yoffset,
                  (i - starty) * avcharHeight + yoffset + avcharHeight / 4,
                  (i - starty) * avcharHeight + yoffset },
              3);
    }
    if (above)
    {
      gg.fillPolygon(
              new int[]
              { getSize().width - avcharHeight,
                  getSize().width - avcharHeight, getSize().width },
              new int[]
              { (i - starty + 1) * avcharHeight + yoffset,
                  (i - starty + 1) * avcharHeight + yoffset
                          - avcharHeight / 4,
                  (i - starty + 1) * avcharHeight + yoffset },
              3);

    }
  }

  boolean setHiddenFont(SequenceI seq)
  {
    Font bold = new Font(av.getFont().getName(), Font.BOLD,
            av.getFont().getSize());

    if (av.isReferenceSeq(seq) || av.isHiddenRepSequence(seq))
    {
      gg.setFont(bold);
      return true;
    }
    return false;
  }

  /**
   * Respond to viewport range changes (e.g. alignment panel was scrolled). Both
   * scrolling and resizing change viewport ranges. Scrolling changes both start
   * and end points, but resize only changes end values. Here we only want to
   * fastpaint on a scroll, with resize using a normal paint, so scroll events
   * are identified as changes to the horizontal or vertical start value.
   * <p>
   * In unwrapped mode, only responds to a vertical scroll, as horizontal scroll
   * leaves sequence ids unchanged. In wrapped mode, only vertical scroll is
   * provided, but it generates a change of "startres" which does require an
   * update here.
   */
  @Override
  public void propertyChange(PropertyChangeEvent evt)
  {
    String propertyName = evt.getPropertyName();
    if (propertyName.equals(ViewportRanges.STARTSEQ)
            || (av.getWrapAlignment()
                    && propertyName.equals(ViewportRanges.STARTRES)))
    {
      fastPaint((int) evt.getNewValue() - (int) evt.getOldValue());
    }
    else if (propertyName.equals(ViewportRanges.STARTRESANDSEQ))
    {
      fastPaint(((int[]) evt.getNewValue())[1]
              - ((int[]) evt.getOldValue())[1]);
    }
    else if (propertyName.equals(ViewportRanges.MOVE_VIEWPORT))
    {
      repaint();
    }
  }
}
