/**
 * UGENE - Integrated Bioinformatics Tools.
 * Copyright (C) 2008-2024 UniPro <ugene@unipro.ru>
 * http://ugene.net
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
 * as published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
 * MA 02110-1301, USA.
 */

#include "FindHighFlexRegions.h"

#include "FindHighFlexRegionsAlgorithm.h"

namespace U2 {

FindHighFlexRegions::FindHighFlexRegions(
    const DNASequence& _sequence,
    const HighFlexSettings& _settings)
    : Task(tr("Searching for regions of high DNA flexibility"), TaskFlags_FOSCOE),
      sequence(_sequence),
      settings(_settings) {
}

void FindHighFlexRegions::run() {
    FindHighFlexRegionsAlgorithm::find(
        dynamic_cast<FindHighFlexRegionsListener*>(this),
        settings,
        sequence.constSequence(),
        sequence.length(),
        stateInfo.cancelFlag,
        stateInfo.progress);
}

QList<HighFlexResult> FindHighFlexRegions::getResults() const {
    return results;
}

void FindHighFlexRegions::onResult(const HighFlexResult& result) {
    results.append(result);
}

}  // namespace U2
