/**
 * UGENE - Integrated Bioinformatics Tools.
 * Copyright (C) 2008-2024 UniPro <ugene@unipro.ru>
 * http://ugene.net
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
 * as published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
 * MA 02110-1301, USA.
 */

#include "MsaColorSchemeWeakSimilarities.h"

#include <U2Core/MsaObject.h>
#include <U2Core/U2SafePoints.h>

namespace U2 {

const QList<QPair<QColor, QColor>> MsaColorSchemeWeakSimilarities::colorPairsByFrequence = {QPair<QColor, QColor>(QColor("#0000FF"), QColor("#00FFFF")),
                                                                                            QPair<QColor, QColor>(QColor("#FF00FF"), QColor("#FFFFFF")),
                                                                                            QPair<QColor, QColor>(QColor("#000000"), QColor("#FFFFFF")),
                                                                                            QPair<QColor, QColor>(QColor("#000000"), QColor("#C0C0C0")),
                                                                                            QPair<QColor, QColor>(QColor("#FF6600"), QColor("#FFFFFF"))};

const QPair<QColor, QColor> MsaColorSchemeWeakSimilarities::gapColorPair = QPair<QColor, QColor>(QColor("#000000"), QColor("#FFFFFF"));

MsaColorSchemeWeakSimilarities::MsaColorSchemeWeakSimilarities(QObject* parent, const MsaColorSchemeFactory* factory, MsaObject* maObj)
    : MsaColorSchemePercentageIdententityColored(parent, factory, maObj) {
}

QColor MsaColorSchemeWeakSimilarities::getBackgroundColor(int seq, int pos, char c) const {
    Q_UNUSED(seq);
    if (c == U2Msa::GAP_CHAR) {
        return gapColorPair.second;
    }

    updateCache(pos);
    SAFE_POINT(cachedData.keys().contains(pos), "Column data is absent", gapColorPair.second);

    int fontColorIndex = getColorIndex(pos, c);
    return colorPairsByFrequence[fontColorIndex].second;
}

QColor MsaColorSchemeWeakSimilarities::getFontColor(int seq, int pos, char c) const {
    Q_UNUSED(seq);

    if (c == U2Msa::GAP_CHAR) {
        return gapColorPair.first;
    }

    updateCache(pos);
    SAFE_POINT(cachedData.keys().contains(pos), "Column data is absent", QColor());

    int fontColorIndex = getColorIndex(pos, c);
    return colorPairsByFrequence[fontColorIndex].first;
}

int MsaColorSchemeWeakSimilarities::getColorIndex(const int columnNum, const char c) const {
    int index = 0;
    const ColumnCharsCounter currentColumnData = cachedData.value(columnNum);
    QList<Nucleotide> currentNucleotideList = currentColumnData.getNucleotideList();
    const int size = currentNucleotideList.size();
    CHECK(size > 0, index);
    foreach (const Nucleotide& n, currentNucleotideList) {
        if (n.character == c || index == 4) {
            break;
        }
        index++;
    }
    return index;
}

MsaColorSchemeWeakSimilaritiesFactory::MsaColorSchemeWeakSimilaritiesFactory(QObject* parent, const QString& id, const QString& name, const AlphabetFlags& supportedAlphabets)
    : MsaColorSchemeFactory(parent, id, name, supportedAlphabets) {
}

MsaColorScheme* MsaColorSchemeWeakSimilaritiesFactory::create(QObject* parent, MsaObject* maObj) const {
    return new MsaColorSchemeWeakSimilarities(parent, this, maObj);
}

}  // namespace U2