/**
 * UGENE - Integrated Bioinformatics Tools.
 * Copyright (C) 2008-2023 UniPro <ugene@unipro.ru>
 * http://ugene.net
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
 * as published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
 * MA 02110-1301, USA.
 */

#pragma once

#include <U2Core/AppFileStorage.h>

namespace U2 {

class U2CORE_EXPORT FileStorageUtils {
public:
    /**
     * Finds the destination file by @srcUrl and @role.
     * Checks hash for both destination and source files.
     * If hashes are ok then returns the destination file.
     */
    static QString getFileToFileInfo(const QString& srcUrl, const QString& role, FileStorage::WorkflowProcess& process);

    /**
     * Adds info about file to file relation to the storage.
     * Creates hash for both destination and source files.
     */
    static void addFileToFileInfo(const FileStorage::FileInfo& fileToFileInfo, FileStorage::WorkflowProcess& process);

    /**
     * Returns the url to the sorted BAM file for the source @bamUrl.
     * If this BAM file is not in the file storage then returns empty string.
     */
    static QString getSortedBamUrl(const QString& bamUrl, FileStorage::WorkflowProcess& process);

    /**
     * Adds to the file storage information about sorted BAM: url and hash
     */
    static void addSortedBamUrl(const QString& bamUrl, const QString& sortedBamUrl, FileStorage::WorkflowProcess& process);

    /**
     * Returns the url to the converted BAM file for the source @samUrl.
     * If this BAM file is not in the file storage then returns empty string.
     */
    static QString getSamToBamConvertInfo(const QString& samUrl, FileStorage::WorkflowProcess& process);
    /**
     * Adds to the file storage information about converted SAM file: url and hash
     */
    static void addSamToBamConvertInfo(const QString& samUrl, const QString& bamUrl, FileStorage::WorkflowProcess& process);
};

}  // namespace U2
