/**
 * UGENE - Integrated Bioinformatics Tools.
 * Copyright (C) 2008-2023 UniPro <ugene@unipro.ru>
 * http://ugene.net
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
 * as published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
 * MA 02110-1301, USA.
 */

#pragma once

#include <U2Core/DocumentModel.h>
#include <U2Core/Task.h>

namespace U2 {

class U2SequenceObject;
class AnnotationTableObject;
class DNATranslation;
class DNASequenceSelection;

class U2CORE_EXPORT ReverseComplementSequenceTask : public Task {
    Q_OBJECT
public:
    ReverseComplementSequenceTask(U2SequenceObject* dnaObj,
                                  const QList<AnnotationTableObject*>& annotations,
                                  DNASequenceSelection* selection,
                                  DNATranslation* complTT);

private:
    U2SequenceObject* seqObj;
    QList<AnnotationTableObject*> aObjs;
    DNASequenceSelection* selection;
    DNATranslation* complTT;
};

class U2CORE_EXPORT ReverseSequenceTask : public Task {
    Q_OBJECT
public:
    ReverseSequenceTask(U2SequenceObject* seqObj,
                        const QList<AnnotationTableObject*>& annotations,
                        DNASequenceSelection* selection);
    ReportResult report();

private:
    U2SequenceObject* seqObj;
    QList<AnnotationTableObject*> aObjs;
    DNASequenceSelection* selection;
};

class U2CORE_EXPORT ComplementSequenceTask : public Task {
    Q_OBJECT
public:
    ComplementSequenceTask(U2SequenceObject* seqObj,
                           const QList<AnnotationTableObject*>& annotations,
                           DNASequenceSelection* selection,
                           DNATranslation* complTT);
    ReportResult report();

private:
    U2SequenceObject* seqObj;
    QList<AnnotationTableObject*> aObjs;
    DNASequenceSelection* selection;
    DNATranslation* complTT;
};

}  // namespace U2
