/**
 * UGENE - Integrated Bioinformatics Tools.
 * Copyright (C) 2008-2024 UniPro <ugene@unipro.ru>
 * http://ugene.net
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
 * as published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
 * MA 02110-1301, USA.
 */

#include "SMatrixTests.h"

#include <QDomElement>

#include <U2Algorithm/SubstMatrixRegistry.h>

#include <U2Core/AppContext.h>
#include <U2Core/DNAAlphabet.h>
#include <U2Core/SMatrix.h>

namespace U2 {

#define FILE_ATTR "file"
#define COL_ATTR "column"
#define ROW_ATTR "row"
#define VALUE_ATTR "val"
#define ALPHABET_ATTR "alphabet"

QList<XMLTestFactory*> SMatrixTests::createTestFactories() {
    QList<XMLTestFactory*> res;
    res.append(GTest_SubstMatrix::createFactory());
    return res;
}

void GTest_SubstMatrix::init(XMLTestFormat*, const QDomElement& el) {
    QString buf;
    bool isOk;
    buf = el.attribute(FILE_ATTR);
    if (!buf.isEmpty()) {
        file = buf;
    }

    buf = el.attribute(COL_ATTR);
    if (!buf.isEmpty()) {
        col = buf.at(0).toLatin1();
    }

    buf = el.attribute(ROW_ATTR);
    if (!buf.isEmpty()) {
        row = buf.at(0).toLatin1();
    }

    buf = el.attribute(VALUE_ATTR);
    if (!buf.isEmpty()) {
        float tmp = buf.toFloat(&isOk);
        if (!isOk) {
            return;
        }
        expectedVal = tmp;
    }

    buf = el.attribute(ALPHABET_ATTR);
    if (!buf.isEmpty()) {
        expectedAlphabetId = buf;
    }
}

Task::ReportResult GTest_SubstMatrix::report() {
    SubstMatrixRegistry* r = AppContext::getSubstMatrixRegistry();
    if ((r->getMatrixNames()).indexOf(file) == -1) {
        stateInfo.setError(tr("Matrix with %1 name not found").arg(file));
        return ReportResult_Finished;
    }
    SMatrix m = r->getMatrix(file);
    float actualScore = m.getScore(row, col);
    if (expectedVal != actualScore) {
        stateInfo.setError(tr("Actual score %1 not equal with expected %2").arg(actualScore).arg(expectedVal));
        return ReportResult_Finished;
    }
    if (m.getAlphabet()->getId() != expectedAlphabetId) {
        stateInfo.setError(tr("Actual alphabet id %1 not equal with expected %2").arg(m.getAlphabet()->getId()).arg(expectedAlphabetId));
    }
    return ReportResult_Finished;
}

}  // namespace U2
