/**
 * UGENE - Integrated Bioinformatics Tools.
 * Copyright (C) 2008-2024 UniPro <ugene@unipro.ru>
 * http://ugene.net
 *
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License
 * as published by the Free Software Foundation; either version 2
 * of the License, or (at your option) any later version.
 *
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
 * GNU General Public License for more details.
 *
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, write to the Free Software
 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
 * MA 02110-1301, USA.
 */

#include "PWMatrixObject.h"

#include <U2Core/DatatypeSerializeUtils.h>
#include <U2Core/DocumentModel.h>
#include <U2Core/GHints.h>
#include <U2Core/U2DbiUtils.h>
#include <U2Core/U2ObjectDbi.h>

#include "../util/PMatrixSerializeUtils.h"

namespace U2 {

const GObjectType PWMatrixObject::TYPE("pwm-obj");

// PWMatrixObject
//////////////////////////////////////////////////////////////////////////

U2PWMatrix::U2PWMatrix()
    : U2RawData() {
}

U2PWMatrix::U2PWMatrix(const U2DbiRef& dbiRef)
    : U2RawData(dbiRef) {
}

U2DataType U2PWMatrix::getType() const {
    return U2Type::PWMatrix;
}

// PWMatrixObject
//////////////////////////////////////////////////////////////////////////
PWMatrixObject* PWMatrixObject::createInstance(const PWMatrix& matrix, const QString& objectName, const U2DbiRef& dbiRef, U2OpStatus& os, const QVariantMap& hintsMap) {
    U2PWMatrix object(dbiRef);
    const QString dstFolder = hintsMap.value(DocumentFormat::DBI_FOLDER_HINT, U2ObjectDbi::ROOT_FOLDER).toString();
    const U2EntityRef entRef = PMatrixSerializeUtils<WMatrixSerializer, PWMatrix>::commit(matrix,
                                                                                          objectName,
                                                                                          dbiRef,
                                                                                          dstFolder,
                                                                                          object,
                                                                                          os);
    CHECK_OP(os, nullptr);
    return new PWMatrixObject(matrix, objectName, entRef, hintsMap);
}

PWMatrixObject::PWMatrixObject(const QString& objectName, const U2EntityRef& matrixRef, const QVariantMap& hintsMap)
    : GObject(TYPE, objectName, hintsMap) {
    entityRef = matrixRef;
}

PWMatrixObject::PWMatrixObject(const PWMatrix& matrix, const QString& objectName, const U2EntityRef& matrixRef, const QVariantMap& hintsMap)
    : GObject(TYPE, objectName, hintsMap), m(matrix) {
    entityRef = matrixRef;
}

void PWMatrixObject::loadDataCore(U2OpStatus& os) {
    PMatrixSerializeUtils<WMatrixSerializer, PWMatrix>::retrieve(entityRef, m, os);
}

const PWMatrix& PWMatrixObject::getMatrix() const {
    ensureDataLoaded();
    return m;
}

GObject* PWMatrixObject::clone(const U2DbiRef& dstDbiRef, U2OpStatus& os, const QVariantMap& hints) const {
    DbiOperationsBlock opBlock(dstDbiRef, os);
    CHECK_OP(os, nullptr);

    GHintsDefaultImpl gHints(getGHintsMap());
    gHints.setAll(hints);
    const QString dstFolder = gHints.get(DocumentFormat::DBI_FOLDER_HINT, U2ObjectDbi::ROOT_FOLDER).toString();

    U2PWMatrix dstObject;
    RawDataUdrSchema::cloneObject(entityRef, dstDbiRef, dstFolder, dstObject, os);
    CHECK_OP(os, nullptr);

    const U2EntityRef dstEntRef(dstDbiRef, dstObject.id);
    PWMatrixObject* dst = new PWMatrixObject(getGObjectName(), dstEntRef, gHints.getMap());
    dst->setIndexInfo(getIndexInfo());
    return dst;
}

}  // namespace U2
