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Package Bio :: Package Phylo :: Module PhyloXML :: Class MolSeq
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Class MolSeq

source code

          object --+        
                   |        
BaseTree.TreeElement --+    
                       |    
            PhyloElement --+
                           |
                          MolSeq

Store a molecular sequence.

Instance Methods [hide private]
 
__init__(self, value, is_aligned=None)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature		 source code
 
__str__(self)
Show this object's constructor with its primitive arguments.		 source code

Inherited from BaseTree.TreeElement: __repr__

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __subclasshook__

Class Variables [hide private]
  re_value = re.compile(r'[a-zA-Z\.-\?\*_]+')
Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, value, is_aligned=None)
(Constructor)

source code 

x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Parameters:
  • value - the sequence, as a string
  • is_aligned - True is mol_seq is aligned (usu. meaning gaps are introduced and all aligned seqs are the same length)
Overrides: object.__init__
(inherited documentation)

__str__(self)
(Informal representation operator)

source code 

Show this object's constructor with its primitive arguments.

Overrides: object.__str__
(inherited documentation)

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