Package Bio :: Package Phylo :: Module Newick :: Class Clade

Class Clade

          object --+        
                   |        
BaseTree.TreeElement --+    
                       |    
          object --+   |    
                   |   |    
  BaseTree.TreeMixin --+    
                       |    
          BaseTree.Clade --+
                           |
                          Clade

Newick Clade (sub-tree) object.

Instance Methods

[hide private]

__init__(self, branch_length=1.0, name=None, clades=None, confidence=None, comment=None)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature

source code

Inherited from BaseTree.Clade: __getitem__, __iter__, __len__, __nonzero__, __str__, is_terminal

Inherited from BaseTree.TreeElement: __repr__

Inherited from BaseTree.TreeMixin: collapse, collapse_all, common_ancestor, count_terminals, depths, distance, find_any, find_clades, find_elements, get_nonterminals, get_path, get_terminals, is_bifurcating, is_monophyletic, is_parent_of, is_preterminal, ladderize, prune, split, total_branch_length, trace

Inherited from BaseTree.TreeMixin (private): _filter_search

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __subclasshook__

Properties

[hide private]

Inherited from BaseTree.Clade: root

Inherited from object: __class__

Method Details

[hide private]

init(self, branch_length=1.0, name=None, clades=None, confidence=None, comment=None)
(Constructor)

source code

x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Parameters:

branch_length - The length of the branch leading to the root node of this clade.
name - The clade's name (a label).
clades - Sub-trees rooted directly under this tree's root.

Overrides: object.__init__

(inherited documentation)

Class Clade

__init__(self, branch_length=1.0, name=None, clades=None, confidence=None, comment=None) (Constructor)

init(self, branch_length=1.0, name=None, clades=None, confidence=None, comment=None)
(Constructor)