Package Bio :: Package PDB :: Module FragmentMapper' :: Class FragmentMapper

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Class FragmentMapper

Map polypeptides in a model to lists of representative fragments.

Instance Methods

__contains__(self, res)
True if the given residue is in any of the mapped fragments.

source code

Fragment

__getitem__(self, res)
Returns: fragment classification

source code

__init__(self, model, lsize=20, flength=5, fdir='.') source code

_map(self, model)

source code

has_key(self, res)
(Obsolete)

source code

Method Details

contains(self, res)
(In operator)

True if the given residue is in any of the mapped fragments.

Parameters:

res (Residue)

getitem(self, res)
(Indexing operator)

Parameters:

res (Residue)

Returns: Fragment

fragment classification

init(self, model, lsize=20, flength=5, fdir=`'.'`)
(Constructor)

Parameters:

model (Model) - the model that will be mapped
lsize (int) - number of fragments in the library
flength (int) - length of fragments in the library
fdir (string) - directory where the definition files are found (default=".")

_map(self, model)

Parameters:

model (Model) - the model that will be mapped

has_key(self, res)

(Obsolete)

Parameters:

res (Residue)