Package Bio :: Package SeqIO :: Module InsdcIO :: Class GenBankWriter

Class GenBankWriter

                     object --+            
                              |            
      Interfaces.SequenceWriter --+        
                                  |        
Interfaces.SequentialSequenceWriter --+    
                                      |    
                           _InsdcWriter --+
                                          |
                                         GenBankWriter

Instance Methods

[hide private]

_write_single_line(self, tag, text)
Used in the the 'header' of each GenBank record.

source code

_write_multi_line(self, tag, text)
Used in the the 'header' of each GenBank record.

source code

_write_multi_entries(self, tag, text_list)

source code

_get_date(self, record)

source code

_get_data_division(self, record)

source code

_write_the_first_line(self, record)
Write the LOCUS line.

source code

_write_references(self, record)

source code

_write_comment(self, record)

source code

_write_contig(self, record)

source code

_write_sequence(self, record)

source code

write_record(self, record)
Write a single record to the output file.

source code

Inherited from _InsdcWriter (private): _get_annotation_str, _split_contig, _split_multi_line, _wrap_location, _write_feature, _write_feature_qualifier

Inherited from Interfaces.SequentialSequenceWriter: __init__, write_file, write_footer, write_header, write_records

Inherited from Interfaces.SequenceWriter: clean

Inherited from Interfaces.SequenceWriter (private): _get_seq_string

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables

[hide private]

HEADER_WIDTH = 12

QUALIFIER_INDENT = 21

Inherited from _InsdcWriter: MAX_WIDTH, QUALIFIER_INDENT_STR, QUALIFIER_INDENT_TMP

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

write_record(self, record)

source code

Write a single record to the output file.

Overrides: Interfaces.SequentialSequenceWriter.write_record