Class PhymlCommandline
source code
object --+
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Application.AbstractCommandline --+
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PhymlCommandline
Command-line wrapper for the tree inference program PhyML.
Homepage: http://www.atgc-montpellier.fr/phyml
Citations:
Guindon S, Gascuel O.
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum
likelihood.
Systematic Biology, 2003 Oct;52(5):696-704.
PubMed PMID: 14530136.
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O.
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing
the Performance of PhyML 3.0.
Systematic Biology, 2010 59(3):307-21.
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__init__(self,
cmd='phyml',
**kwargs)
Create a new instance of a command line wrapper object. |
source code
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Inherited from Application.AbstractCommandline:
__call__,
__repr__,
__setattr__,
__str__,
set_parameter
Inherited from object:
__delattr__,
__format__,
__getattribute__,
__hash__,
__new__,
__reduce__,
__reduce_ex__,
__sizeof__,
__subclasshook__
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Inherited from object:
__class__
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__init__(self,
cmd='phyml',
**kwargs)
(Constructor)
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Create a new instance of a command line wrapper object.
- Overrides:
object.__init__
- (inherited documentation)
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