Trees       Indices       Help   
Package Bio :: Package PDB :: Module Superimposer' :: Class Superimposer
[hide private]
[frames] | no frames]

Class Superimposer

source code

object --+
         |
        Superimposer

Rotate/translate one set of atoms on top of another, thereby minimizing the RMSD.

Instance Methods [hide private]
 
__init__(self)
x.__init__(...) initializes x; see help(type(x)) for signature		 source code
 
apply(self, atom_list)
Rotate/translate a list of atoms.		 source code
 
set_atoms(self, fixed, moving)
Put (translate/rotate) the atoms in fixed on the atoms in moving, in such a way that the RMSD is minimized.		 source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self)
(Constructor)

source code 

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__
(inherited documentation)

set_atoms(self, fixed, moving)

source code 

Put (translate/rotate) the atoms in fixed on the atoms in moving, in such a way that the RMSD is minimized.

Parameters:
  • fixed - list of (fixed) atoms
  • moving - list of (moving) atoms
  • fixed,moving ([Atom, Atom,...])

   Trees       Indices       Help   
Generated by Epydoc 3.0.1 on Thu Aug 18 18:19:27 2011 http://epydoc.sourceforge.net