Bio.PDB.HSExposure.ExposureCN

Class ExposureCN

object --+ | AbstractPropertyMap.AbstractPropertyMap --+ | ExposureCN

Instance Methods

__init__(self, model, radius=12.0, offset=0)
A residue's exposure is defined as the number of CA atoms around that residues CA atom.

source code

Inherited from AbstractPropertyMap.AbstractPropertyMap: __contains__, __getitem__, __iter__, __len__, has_key, keys

Inherited from AbstractPropertyMap.AbstractPropertyMap (private): _translate_id

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties

[hide private]

Inherited from object: __class__

init(self, model, radius=12.0, offset=0)
(Constructor)

source code

A residue's exposure is defined as the number of CA atoms around that residues CA atom. A dictionary is returned that uses a Residue object as key, and the residue exposure as corresponding value.

Parameters:

model (Model) - the model that contains the residues
radius (float) - radius of the sphere (centred at the CA atom)
offset (int) - number of flanking residues that are ignored in the calculation of the number of neighbors

Overrides: object.__init__

Class ExposureCN

__init__(self, model, radius=12.0, offset=0) (Constructor)

init(self, model, radius=12.0, offset=0)
(Constructor)