Package Bio :: Package Data :: Module CodonTable :: Class CodonTable

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Class CodonTable

object --+
         |
        CodonTable

Known Subclasses:

Instance Methods

__init__(self, nucleotide_alphabet=NucleotideAlphabet(), protein_alphabet=ProteinAlphabet(), forward_table={}, back_table={}, start_codons=[], stop_codons=[])
x.__init__(...) initializes x; see help(type(x)) for signature source code

__str__(self)
Returns a simple text representation of the codon table

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __subclasshook__

Class Variables

nucleotide_alphabet = NucleotideAlphabet()

protein_alphabet = ProteinAlphabet()

forward_table = {}

back_table = {}

start_codons = []

stop_codons = []

Properties

Inherited from object: __class__

Method Details

init(self, nucleotide_alphabet=NucleotideAlphabet(), protein_alphabet=ProteinAlphabet(), forward_table=`{}`, back_table=`{}`, start_codons=`[]`, stop_codons=`[]`)
(Constructor)

x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__: (inherited documentation)

str(self)
(Informal representation operator)

Returns a simple text representation of the codon table

e.g. >>> import Bio.Data.CodonTable >>> print Bio.Data.CodonTable.standard_dna_table >>> print Bio.Data.CodonTable.generic_by_id[1]

Overrides: object.__str__