Package Bio :: Package CAPS :: Class CAPSMap

Class CAPSMap

object --+
         |
        CAPSMap

A map of an alignment showing all possible dcuts.

Members:
alignment  The alignment that is mapped.
dcuts      A list of possible CAPS markers in the form of 
                     DifferentialCutsites.

Instance Methods

[hide private]

__init__(self, alignment, enzymes=[])
Initialize the CAPSMap source code

_digest_with(self, enzyme)

source code

_digest(self)

source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, alignment, enzymes=`[]`)
(Constructor)

source code

Initialize the CAPSMap

Required: alignment The alignment to be mapped.

Optional: enzymes The enzymes to be used to create the map.

Overrides: object.__init__

Class CAPSMap

__init__(self, alignment, enzymes=[]) (Constructor)

init(self, alignment, enzymes=`[]`)
(Constructor)