Package Bio :: Package Blast :: Module Applications :: Class _NcbiblastMain2SeqCommandline

Class _NcbiblastMain2SeqCommandline

                     object --+                
                              |                
Application.AbstractCommandline --+            
                                  |            
          _NcbibaseblastCommandline --+        
                                      |        
                  _NcbiblastCommandline --+    
                                          |    
                  _Ncbiblast2SeqCommandline --+
                                              |
                                             _NcbiblastMain2SeqCommandline

Known Subclasses:

Base Commandline object for (new) NCBI BLAST+ wrappers (PRIVATE).

This is provided for subclassing, it deals with shared options common to the main BLAST tools blastp, blastn, blastx, tblastx, tblastn but not psiblast, rpsblast or rpstblastn.

Instance Methods

[hide private]

__init__(self, cmd=None, **kwargs)
Create a new instance of a command line wrapper object.

source code

_validate(self)
Make sure the required parameters have been set (PRIVATE).

source code

Inherited from _NcbibaseblastCommandline (private): _validate_incompatibilities

Inherited from Application.AbstractCommandline: __call__, __repr__, __setattr__, __str__, set_parameter

Inherited from Application.AbstractCommandline (private): _check_value, _clear_parameter, _get_parameter

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __sizeof__, __subclasshook__