Package Bio :: Package AlignIO :: Module PhylipIO :: Class RelaxedPhylipIterator

Class RelaxedPhylipIterator

                  object --+        
                           |        
Interfaces.AlignmentIterator --+    
                               |    
                  PhylipIterator --+
                                   |
                                  RelaxedPhylipIterator

Relaxed Phylip format Iterator

Instance Methods

[hide private]

_split_id(self, line)
Returns the ID, sequence data from a line Extracts the sequence ID from a Phylip line, returning a tuple containing:

source code

Inherited from PhylipIterator: next

Inherited from PhylipIterator (private): _is_header

Inherited from Interfaces.AlignmentIterator: __init__, __iter__

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables

[hide private]

Inherited from PhylipIterator: id_width

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

_split_id(self, line)

source code

Returns the ID, sequence data from a line
Extracts the sequence ID from a Phylip line, returning a tuple
containing:

    (sequence_id, sequence_residues)

For relaxed format - split at the first whitespace character

Overrides: PhylipIterator._split_id