Package Bio :: Package Sequencing

Package Sequencing

Code to deal with various programs for sequencing and assembly.

This code deals with programs such as Phred, Phrap and Consed -- which provide utilities for calling bases from sequencing reads, and assembling sequences into contigs.

Submodules

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Bio.Sequencing.Ace: Parser for ACE files output by PHRAP.
Bio.Sequencing.Applications: Main entry point for application command line wrappers related to sequencing.
- Bio.Sequencing.Applications._Novoalign: Command line wrapper for the short read aligner Novoalign by Novocraft (www.novocraft.com)
Bio.Sequencing.Phd: Parser for PHD files output by PHRED and used by PHRAP and CONSED.

Variables

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__package__ = None
hash(x)