Bio :: Restriction :: Restriction :: RcaI :: Class RcaI

Type RcaI

 object --+                
          |                
       type --+            
              |            
RestrictionType --+        
                  |        
        AbstractCut --+    
                      |    
         NonPalindromic --+
                          |
 object --+               |
          |               |
       type --+           |
              |           |
RestrictionType --+       |
                  |       |
        AbstractCut --+   |
                      |   |
                 OneCut --+
                          |
 object --+               |
          |               |
       type --+           |
              |           |
RestrictionType --+       |
                  |       |
        AbstractCut --+   |
                      |   |
                    Ov5 --+
                          |
 object --+               |
          |               |
       type --+           |
              |           |
RestrictionType --+       |
                  |       |
        AbstractCut --+   |
                      |   |
                Defined --+
                          |
 object --+               |
          |               |
       type --+           |
              |           |
RestrictionType --+       |
                  |       |
        AbstractCut --+   |
                      |   |
             Meth_Undep --+
                          |
 object --+               |
          |               |
       type --+           |
              |           |
RestrictionType --+       |
                  |       |
        AbstractCut --+   |
                      |   |
 Commercially_available --+
                          |
     object --+           |
              |           |
           type --+       |
                  |       |
    RestrictionType --+   |
                      |   |
            AbstractCut --+
                          |
         object --+       |
                  |       |
               type --+   |
                      |   |
        RestrictionType --+
                          |
                         RcaI

Instance Methods

[hide private]

Inherited from RestrictionType: __add__, __div__, __eq__, __floordiv__, __ge__, __gt__, __init__, __le__, __len__, __lt__, __mod__, __ne__, __rdiv__, __repr__, __rfloordiv__, __rshift__, __rtruediv__, __str__, __truediv__

Inherited from type: __call__, __cmp__, __delattr__, __getattribute__, __hash__, __new__, __setattr__, __subclasses__, mro

Inherited from object: __format__, __reduce__, __reduce_ex__, __sizeof__, __subclasshook__

Class Methods

[hide private]

Inherited from NonPalindromic: is_palindromic

Inherited from NonPalindromic (private): _search

Inherited from OneCut: characteristic, cut_once, cut_twice

Inherited from OneCut (private): _modify, _rev_modify

Inherited from Ov5: catalyse, catalyze, compatible_end, is_3overhang, is_5overhang, is_blunt, overhang

Inherited from Ov5 (private): _mod1

Inherited from Defined: elucidate, is_ambiguous, is_defined, is_unknown

Inherited from Defined (private): _drop, _mod2

Inherited from Meth_Undep: is_methylable

Inherited from Commercially_available: buffers, is_comm, supplier_list, suppliers

Inherited from AbstractCut: all_suppliers, equischizomers, frequency, is_equischizomer, is_isoschizomer, is_neoschizomer, isoschizomers, neoschizomers, search

Class Variables

[hide private]

charac = (1, -1, None, None, 'TCATGA')

compsite = re.compile(r'(?P<RcaI>TCATGA)|(?P<RcaI_as>TCATGA)')

dna = None
hash(x)

freq = 4096

fst3 = -1

fst5 = 1

inact_temp = 65

opt_temp = 37

ovhg = -4

ovhgseq = 'CATG'

results = None
hash(x)

scd3 = None
hash(x)

scd5 = None
hash(x)

site = 'TCATGA'

size = 6

substrat = 'DNA'

suppl = ('M')

Properties

[hide private]

Inherited from type: __abstractmethods__, __base__, __bases__, __basicsize__, __dictoffset__, __flags__, __instancecheck__, __itemsize__, __mro__, __name__, __subclasscheck__, __weakrefoffset__

Inherited from object: __class__