Class StructureAlignment

This class aligns two structures based on an alignment of their sequences.

Instance Methods

__init__(self, fasta_align, m1, m2, si=0, sj=1)
fasta_align --- Alignment object ...

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_test_equivalence(self, r1, aa1)
Test if aa in sequence fits aa in structure.

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get_iterator(self)
Iterator over all residue pairs.

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get_maps(self)
Return two dictionaries that map a residue in one structure to the equivealent residue in the other structure.

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Method Details


fasta_align --- Alignment object 
m1, m2 --- two models
si, sj --- the sequences in the Alignment object that
        correspond to the structures