Package Bio :: Package GFF :: Class FeatureQuery

Class FeatureQuery

  object --+    
           |    
DocSQL.Query --+
               |
              FeatureQuery


SELECT fdata.fref AS seqname,
    ftype.fsource AS source,
    ftype.fmethod AS feature,
    fdata.fstart AS start,
    fdata.fstop AS end,
    fdata.fscore AS score,
    fdata.fstrand AS strand,
    fdata.fphase AS frame,
    fdata.ftarget_start AS target_start,
    fdata.ftarget_stop AS target_end,
    fdata.gid,
    fgroup.gclass,
    fgroup.gname
FROM fdata, ftype, fgroup
WHERE fdata.ftypeid = ftype.ftypeid
    AND fdata.gid = fgroup.gid

Nested Classes

[hide private]

row_class
row of FeatureQuery results works like a Feature

Instance Methods

[hide private]

__init__(self, seqname=None, coords=None, complement=0, method=None, source=None, object=None, gid=None, *args, **keywds)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature

source code

aggregate(self)

source code

Inherited from DocSQL.Query: __iter__, __repr__, cursor, dump

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables

[hide private]

Inherited from DocSQL.Query: MSG_FAILURE, MSG_SUCCESS, error_message, message, prefix, suffix

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, seqname=None, coords=None, complement=0, method=None, source=None, object=None, gid=None, *args, **keywds)
(Constructor)

source code

x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Overrides: object.__init__: (inherited documentation)

Class FeatureQuery

__init__(self, seqname=None, coords=None, complement=0, method=None, source=None, object=None, gid=None, *args, **keywds) (Constructor)

init(self, seqname=None, coords=None, complement=0, method=None, source=None, object=None, gid=None, *args, **keywds)
(Constructor)