Package Bio :: Package Emboss :: Module Applications :: Class SeqmatchallCommandline

Class SeqmatchallCommandline

                     object --+            
                              |            
Application.AbstractCommandline --+        
                                  |        
          _EmbossMinimalCommandLine --+    
                                      |    
                     _EmbossCommandLine --+
                                          |
                                         SeqmatchallCommandline

Commandline object for the seqmatchall program from EMBOSS

e.g. >>> cline = SeqmatchallCommandline(sequence="opuntia.fasta", outfile="opuntia.txt") >>> cline.auto = True >>> cline.wordsize = 18 >>> cline.aformat = "pair" >>> print cline seqmatchall -auto -outfile=opuntia.txt -sequence=opuntia.fasta -wordsize=18 -aformat=pair

Instance Methods

[hide private]

__init__(self, cmd='seqmatchall', **kwargs)
Create a new instance of a command line wrapper object. source code

Inherited from _EmbossCommandLine (private): _validate

Inherited from Application.AbstractCommandline: __repr__, __setattr__, __str__, set_parameter

Inherited from Application.AbstractCommandline (private): _check_value, _clear_parameter, _get_parameter

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __sizeof__, __subclasshook__

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, cmd=`'seqmatchall'`, **kwargs)
(Constructor)

source code

Create a new instance of a command line wrapper object.

Overrides: object.__init__: (inherited documentation)

Class SeqmatchallCommandline

__init__(self, cmd='seqmatchall', **kwargs) (Constructor)

init(self, cmd=`'seqmatchall'`, **kwargs)
(Constructor)