Package Bio :: Package Blast :: Module Applications :: Class _NcbiblastCommandline

Class _NcbiblastCommandline

                     object --+    
                              |    
Application.AbstractCommandline --+
                                  |
                                 _NcbiblastCommandline

Known Subclasses:

Base Commandline object for (classic) NCBI BLAST wrappers (PRIVATE).

This is provided for subclassing, it deals with shared options common to all the BLAST tools (blastn, rpsblast, rpsblast, etc).

Instance Methods

[hide private]

__init__(self, cmd=None, **kwargs)
Create a new instance of a command line wrapper object.

source code

_validate(self)
Make sure the required parameters have been set (PRIVATE).

source code

Inherited from Application.AbstractCommandline: __repr__, __setattr__, __str__, set_parameter

Inherited from Application.AbstractCommandline (private): _check_value, _clear_parameter, _get_parameter

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __sizeof__, __subclasshook__