Class NcbirpstblastnCommandline

source code

                     object --+        
                              |        
Application.AbstractCommandline --+    
                                  |    
              _NcbiblastCommandline --+
                                      |
                                     NcbirpstblastnCommandline

Wrapper for the NCBI BLAST+ program rpstblastn.

With the release of BLAST+ (BLAST rewritten in C++ instead of C), the NCBI replaced the old rpsblast tool with a similar tool of the same name, and a separate tool rpstblastn for Translated Reverse Position Specific BLAST.

>>> from Bio.Blast.Applications import NcbirpstblastnCommandline
>>> cline = NcbirpstblastnCommandline(help=True)
>>> cline
NcbirpstblastnCommandline(cmd='rpstblastn', help=True)
>>> print cline
rpstblastn -help

You would typically run the command line with the Python subprocess module, as described in the Biopython tutorial.