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Package Bio :: Package Alphabet :: Class HasStopCodon
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Class HasStopCodon

source code

AlphabetEncoder --+
                  |
                 HasStopCodon
Instance Methods [hide private]
 
__init__(self, alphabet, stop_symbol='*') source code
 
__cmp__(self, other) source code
 
contains(self, other)
Does this alphabet 'contain' the other (OBSOLETE?).		 source code
 
_upper(self)
Return an upper case variant of the current alphabet (PRIVATE).		 source code
 
_lower(self)
Return a lower case variant of the current alphabet (PRIVATE).		 source code

Inherited from AlphabetEncoder: __getattr__, __repr__

Method Details [hide private]

__init__(self, alphabet, stop_symbol='*')
(Constructor)

source code 
Overrides: AlphabetEncoder.__init__

contains(self, other)

source code 

Does this alphabet 'contain' the other (OBSOLETE?).

Returns a boolean. This relies on the Alphabet subclassing hierarchy, and attempts to check the stop symbol. This fails if the other alphabet does not have a stop symbol!

Overrides: AlphabetEncoder.contains

_upper(self)

source code 

Return an upper case variant of the current alphabet (PRIVATE).

Overrides: AlphabetEncoder._upper

_lower(self)

source code 

Return a lower case variant of the current alphabet (PRIVATE).

Overrides: AlphabetEncoder._lower

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