Bio	Bio-module.html
Bio.__package__	Bio-module.html#__package__
Bio.Affy	Bio.Affy-module.html
Bio.Affy.__package__	Bio.Affy-module.html#__package__
Bio.Affy.CelFile	Bio.Affy.CelFile-module.html
Bio.Affy.CelFile.FLOATING_POINT_SUPPORT	Bio.Affy.CelFile-module.html#FLOATING_POINT_SUPPORT
Bio.Affy.CelFile.True_	Bio.Affy.CelFile-module.html#True_
Bio.Affy.CelFile.cosh	Bio.Affy.CelFile-module.html#cosh
Bio.Affy.CelFile.FPE_OVERFLOW	Bio.Affy.CelFile-module.html#FPE_OVERFLOW
Bio.Affy.CelFile.index_exp	Bio.Affy.CelFile-module.html#index_exp
Bio.Affy.CelFile.power	Bio.Affy.CelFile-module.html#power
Bio.Affy.CelFile.ERR_WARN	Bio.Affy.CelFile-module.html#ERR_WARN
Bio.Affy.CelFile.fmax	Bio.Affy.CelFile-module.html#fmax
Bio.Affy.CelFile.sinh	Bio.Affy.CelFile-module.html#sinh
Bio.Affy.CelFile.trunc	Bio.Affy.CelFile-module.html#trunc
Bio.Affy.CelFile.less_equal	Bio.Affy.CelFile-module.html#less_equal
Bio.Affy.CelFile.BUFSIZE	Bio.Affy.CelFile-module.html#BUFSIZE
Bio.Affy.CelFile.divide	Bio.Affy.CelFile-module.html#divide
Bio.Affy.CelFile.sign	Bio.Affy.CelFile-module.html#sign
Bio.Affy.CelFile.bitwise_and	Bio.Affy.CelFile-module.html#bitwise_and
Bio.Affy.CelFile.deg2rad	Bio.Affy.CelFile-module.html#deg2rad
Bio.Affy.CelFile.negative	Bio.Affy.CelFile-module.html#negative
Bio.Affy.CelFile.MAXDIMS	Bio.Affy.CelFile-module.html#MAXDIMS
Bio.Affy.CelFile.true_divide	Bio.Affy.CelFile-module.html#true_divide
Bio.Affy.CelFile.Inf	Bio.Affy.CelFile-module.html#Inf
Bio.Affy.CelFile.infty	Bio.Affy.CelFile-module.html#infty
Bio.Affy.CelFile.logical_or	Bio.Affy.CelFile-module.html#logical_or
Bio.Affy.CelFile.minimum	Bio.Affy.CelFile-module.html#minimum
Bio.Affy.CelFile.WRAP	Bio.Affy.CelFile-module.html#WRAP
Bio.Affy.CelFile.tan	Bio.Affy.CelFile-module.html#tan
Bio.Affy.CelFile.absolute	Bio.Affy.CelFile-module.html#absolute
Bio.Affy.CelFile.sin	Bio.Affy.CelFile-module.html#sin
Bio.Affy.CelFile.s_	Bio.Affy.CelFile-module.html#s_
Bio.Affy.CelFile.logaddexp	Bio.Affy.CelFile-module.html#logaddexp
Bio.Affy.CelFile.read	Bio.Affy.CelFile-module.html#read
Bio.Affy.CelFile.left_shift	Bio.Affy.CelFile-module.html#left_shift
Bio.Affy.CelFile.CLIP	Bio.Affy.CelFile-module.html#CLIP
Bio.Affy.CelFile.degrees	Bio.Affy.CelFile-module.html#degrees
Bio.Affy.CelFile.FPE_INVALID	Bio.Affy.CelFile-module.html#FPE_INVALID
Bio.Affy.CelFile.logaddexp2	Bio.Affy.CelFile-module.html#logaddexp2
Bio.Affy.CelFile.greater	Bio.Affy.CelFile-module.html#greater
Bio.Affy.CelFile.PZERO	Bio.Affy.CelFile-module.html#PZERO
Bio.Affy.CelFile.radians	Bio.Affy.CelFile-module.html#radians
Bio.Affy.CelFile.fmod	Bio.Affy.CelFile-module.html#fmod
Bio.Affy.CelFile.ogrid	Bio.Affy.CelFile-module.html#ogrid
Bio.Affy.CelFile.r_	Bio.Affy.CelFile-module.html#r_
Bio.Affy.CelFile.ERR_RAISE	Bio.Affy.CelFile-module.html#ERR_RAISE
Bio.Affy.CelFile.remainder	Bio.Affy.CelFile-module.html#remainder
Bio.Affy.CelFile.expm1	Bio.Affy.CelFile-module.html#expm1
Bio.Affy.CelFile.newaxis	Bio.Affy.CelFile-module.html#newaxis
Bio.Affy.CelFile.arccos	Bio.Affy.CelFile-module.html#arccos
Bio.Affy.CelFile.rint	Bio.Affy.CelFile-module.html#rint
Bio.Affy.CelFile.arctan2	Bio.Affy.CelFile-module.html#arctan2
Bio.Affy.CelFile.little_endian	Bio.Affy.CelFile-module.html#little_endian
Bio.Affy.CelFile.ldexp	Bio.Affy.CelFile-module.html#ldexp
Bio.Affy.CelFile.logical_xor	Bio.Affy.CelFile-module.html#logical_xor
Bio.Affy.CelFile.exp2	Bio.Affy.CelFile-module.html#exp2
Bio.Affy.CelFile.False_	Bio.Affy.CelFile-module.html#False_
Bio.Affy.CelFile.arctanh	Bio.Affy.CelFile-module.html#arctanh
Bio.Affy.CelFile.typecodes	Bio.Affy.CelFile-module.html#typecodes
Bio.Affy.CelFile.sctypes	Bio.Affy.CelFile-module.html#sctypes
Bio.Affy.CelFile.not_equal	Bio.Affy.CelFile-module.html#not_equal
Bio.Affy.CelFile.typeNA	Bio.Affy.CelFile-module.html#typeNA
Bio.Affy.CelFile.conjugate	Bio.Affy.CelFile-module.html#conjugate
Bio.Affy.CelFile.ERR_LOG	Bio.Affy.CelFile-module.html#ERR_LOG
Bio.Affy.CelFile.right_shift	Bio.Affy.CelFile-module.html#right_shift
Bio.Affy.CelFile.isnan	Bio.Affy.CelFile-module.html#isnan
Bio.Affy.CelFile.multiply	Bio.Affy.CelFile-module.html#multiply
Bio.Affy.CelFile.logical_not	Bio.Affy.CelFile-module.html#logical_not
Bio.Affy.CelFile.nbytes	Bio.Affy.CelFile-module.html#nbytes
Bio.Affy.CelFile.FPE_UNDERFLOW	Bio.Affy.CelFile-module.html#FPE_UNDERFLOW
Bio.Affy.CelFile.frexp	Bio.Affy.CelFile-module.html#frexp
Bio.Affy.CelFile.SHIFT_OVERFLOW	Bio.Affy.CelFile-module.html#SHIFT_OVERFLOW
Bio.Affy.CelFile.NZERO	Bio.Affy.CelFile-module.html#NZERO
Bio.Affy.CelFile.ceil	Bio.Affy.CelFile-module.html#ceil
Bio.Affy.CelFile.isfinite	Bio.Affy.CelFile-module.html#isfinite
Bio.Affy.CelFile.SHIFT_UNDERFLOW	Bio.Affy.CelFile-module.html#SHIFT_UNDERFLOW
Bio.Affy.CelFile.rad2deg	Bio.Affy.CelFile-module.html#rad2deg
Bio.Affy.CelFile.sctypeDict	Bio.Affy.CelFile-module.html#sctypeDict
Bio.Affy.CelFile.NINF	Bio.Affy.CelFile-module.html#NINF
Bio.Affy.CelFile.ERR_DEFAULT2	Bio.Affy.CelFile-module.html#ERR_DEFAULT2
Bio.Affy.CelFile.cos	Bio.Affy.CelFile-module.html#cos
Bio.Affy.CelFile.arccosh	Bio.Affy.CelFile-module.html#arccosh
Bio.Affy.CelFile.equal	Bio.Affy.CelFile-module.html#equal
Bio.Affy.CelFile.bitwise_or	Bio.Affy.CelFile-module.html#bitwise_or
Bio.Affy.CelFile.invert	Bio.Affy.CelFile-module.html#invert
Bio.Affy.CelFile.UFUNC_PYVALS_NAME	Bio.Affy.CelFile-module.html#UFUNC_PYVALS_NAME
Bio.Affy.CelFile.SHIFT_INVALID	Bio.Affy.CelFile-module.html#SHIFT_INVALID
Bio.Affy.CelFile.c_	Bio.Affy.CelFile-module.html#c_
Bio.Affy.CelFile.pi	Bio.Affy.CelFile-module.html#pi
Bio.Affy.CelFile.arcsin	Bio.Affy.CelFile-module.html#arcsin
Bio.Affy.CelFile.sctypeNA	Bio.Affy.CelFile-module.html#sctypeNA
Bio.Affy.CelFile.SHIFT_DIVIDEBYZERO	Bio.Affy.CelFile-module.html#SHIFT_DIVIDEBYZERO
Bio.Affy.CelFile.ERR_PRINT	Bio.Affy.CelFile-module.html#ERR_PRINT
Bio.Affy.CelFile.reciprocal	Bio.Affy.CelFile-module.html#reciprocal
Bio.Affy.CelFile.tanh	Bio.Affy.CelFile-module.html#tanh
Bio.Affy.CelFile.cast	Bio.Affy.CelFile-module.html#cast
Bio.Affy.CelFile.mgrid	Bio.Affy.CelFile-module.html#mgrid
Bio.Affy.CelFile.signbit	Bio.Affy.CelFile-module.html#signbit
Bio.Affy.CelFile.conj	Bio.Affy.CelFile-module.html#conj
Bio.Affy.CelFile.inf	Bio.Affy.CelFile-module.html#inf
Bio.Affy.CelFile.bitwise_xor	Bio.Affy.CelFile-module.html#bitwise_xor
Bio.Affy.CelFile.fabs	Bio.Affy.CelFile-module.html#fabs
Bio.Affy.CelFile.NaN	Bio.Affy.CelFile-module.html#NaN
Bio.Affy.CelFile.sqrt	Bio.Affy.CelFile-module.html#sqrt
Bio.Affy.CelFile.__package__	Bio.Affy.CelFile-module.html#__package__
Bio.Affy.CelFile.floor_divide	Bio.Affy.CelFile-module.html#floor_divide
Bio.Affy.CelFile.greater_equal	Bio.Affy.CelFile-module.html#greater_equal
Bio.Affy.CelFile.PINF	Bio.Affy.CelFile-module.html#PINF
Bio.Affy.CelFile.less	Bio.Affy.CelFile-module.html#less
Bio.Affy.CelFile.ERR_CALL	Bio.Affy.CelFile-module.html#ERR_CALL
Bio.Affy.CelFile.UFUNC_BUFSIZE_DEFAULT	Bio.Affy.CelFile-module.html#UFUNC_BUFSIZE_DEFAULT
Bio.Affy.CelFile.NAN	Bio.Affy.CelFile-module.html#NAN
Bio.Affy.CelFile.typeDict	Bio.Affy.CelFile-module.html#typeDict
Bio.Affy.CelFile.RAISE	Bio.Affy.CelFile-module.html#RAISE
Bio.Affy.CelFile.add	Bio.Affy.CelFile-module.html#add
Bio.Affy.CelFile.mod	Bio.Affy.CelFile-module.html#mod
Bio.Affy.CelFile.bitwise_not	Bio.Affy.CelFile-module.html#bitwise_not
Bio.Affy.CelFile.hypot	Bio.Affy.CelFile-module.html#hypot
Bio.Affy.CelFile.logical_and	Bio.Affy.CelFile-module.html#logical_and
Bio.Affy.CelFile.modf	Bio.Affy.CelFile-module.html#modf
Bio.Affy.CelFile.FPE_DIVIDEBYZERO	Bio.Affy.CelFile-module.html#FPE_DIVIDEBYZERO
Bio.Affy.CelFile.subtract	Bio.Affy.CelFile-module.html#subtract
Bio.Affy.CelFile.fmin	Bio.Affy.CelFile-module.html#fmin
Bio.Affy.CelFile.ones_like	Bio.Affy.CelFile-module.html#ones_like
Bio.Affy.CelFile.arcsinh	Bio.Affy.CelFile-module.html#arcsinh
Bio.Affy.CelFile.square	Bio.Affy.CelFile-module.html#square
Bio.Affy.CelFile.Infinity	Bio.Affy.CelFile-module.html#Infinity
Bio.Affy.CelFile.log	Bio.Affy.CelFile-module.html#log
Bio.Affy.CelFile.log10	Bio.Affy.CelFile-module.html#log10
Bio.Affy.CelFile.maximum	Bio.Affy.CelFile-module.html#maximum
Bio.Affy.CelFile.log1p	Bio.Affy.CelFile-module.html#log1p
Bio.Affy.CelFile.ScalarType	Bio.Affy.CelFile-module.html#ScalarType
Bio.Affy.CelFile.floor	Bio.Affy.CelFile-module.html#floor
Bio.Affy.CelFile.nan	Bio.Affy.CelFile-module.html#nan
Bio.Affy.CelFile.arctan	Bio.Affy.CelFile-module.html#arctan
Bio.Affy.CelFile.ERR_DEFAULT	Bio.Affy.CelFile-module.html#ERR_DEFAULT
Bio.Affy.CelFile.exp	Bio.Affy.CelFile-module.html#exp
Bio.Affy.CelFile.ALLOW_THREADS	Bio.Affy.CelFile-module.html#ALLOW_THREADS
Bio.Affy.CelFile.isinf	Bio.Affy.CelFile-module.html#isinf
Bio.Affy.CelFile.e	Bio.Affy.CelFile-module.html#e
Bio.Affy.CelFile.ERR_IGNORE	Bio.Affy.CelFile-module.html#ERR_IGNORE
Bio.Align	Bio.Align-module.html
Bio.Align.__package__	Bio.Align-module.html#__package__
Bio.Align.AlignInfo	Bio.Align.AlignInfo-module.html
Bio.Align.AlignInfo.print_info_content	Bio.Align.AlignInfo-module.html#print_info_content
Bio.Align.AlignInfo.Protein20Random	Bio.Align.AlignInfo-module.html#Protein20Random
Bio.Align.AlignInfo.__package__	Bio.Align.AlignInfo-module.html#__package__
Bio.Align.AlignInfo.Nucleotide4Random	Bio.Align.AlignInfo-module.html#Nucleotide4Random
Bio.Align.Applications	Bio.Align.Applications-module.html
Bio.Align.Applications.__package__	Bio.Align.Applications-module.html#__package__
Bio.Align.Applications._Clustalw	Bio.Align.Applications._Clustalw-module.html
Bio.Align.Applications._Clustalw.__package__	Bio.Align.Applications._Clustalw-module.html#__package__
Bio.Align.Applications._Dialign	Bio.Align.Applications._Dialign-module.html
Bio.Align.Applications._Dialign.__package__	Bio.Align.Applications._Dialign-module.html#__package__
Bio.Align.Applications._Mafft	Bio.Align.Applications._Mafft-module.html
Bio.Align.Applications._Mafft.__package__	Bio.Align.Applications._Mafft-module.html#__package__
Bio.Align.Applications._Muscle	Bio.Align.Applications._Muscle-module.html
Bio.Align.Applications._Muscle.__package__	Bio.Align.Applications._Muscle-module.html#__package__
Bio.Align.Applications._Prank	Bio.Align.Applications._Prank-module.html
Bio.Align.Applications._Prank.__package__	Bio.Align.Applications._Prank-module.html#__package__
Bio.Align.Applications._Probcons	Bio.Align.Applications._Probcons-module.html
Bio.Align.Applications._Probcons.__package__	Bio.Align.Applications._Probcons-module.html#__package__
Bio.Align.Applications._TCoffee	Bio.Align.Applications._TCoffee-module.html
Bio.Align.Applications._TCoffee.__package__	Bio.Align.Applications._TCoffee-module.html#__package__
Bio.Align.FormatConvert	Bio.Align.FormatConvert-module.html
Bio.Align.FormatConvert.__warningregistry__	Bio.Align.FormatConvert-module.html#__warningregistry__
Bio.Align.FormatConvert.__package__	Bio.Align.FormatConvert-module.html#__package__
Bio.Align.Generic	Bio.Align.Generic-module.html
Bio.Align.Generic._test	Bio.Align.Generic-module.html#_test
Bio.Align.Generic.__package__	Bio.Align.Generic-module.html#__package__
Bio.AlignAce	Bio.AlignAce-module.html
Bio.AlignAce.__warningregistry__	Bio.AlignAce-module.html#__warningregistry__
Bio.AlignAce.__package__	Bio.AlignAce-module.html#__package__
Bio.AlignAce.AlignAceStandalone	Bio.AlignAce.AlignAceStandalone-module.html
Bio.AlignAce.AlignAceStandalone.AlignAce	Bio.AlignAce.AlignAceStandalone-module.html#AlignAce
Bio.AlignAce.AlignAceStandalone.__package__	Bio.AlignAce.AlignAceStandalone-module.html#__package__
Bio.AlignAce.Applications	Bio.AlignAce.Applications-module.html
Bio.AlignAce.Applications.__package__	Bio.AlignAce.Applications-module.html#__package__
Bio.AlignAce.Applications.generic_run	Bio.Application-module.html#generic_run
Bio.AlignAce.CompareAceStandalone	Bio.AlignAce.CompareAceStandalone-module.html
Bio.AlignAce.CompareAceStandalone.__package__	Bio.AlignAce.CompareAceStandalone-module.html#__package__
Bio.AlignAce.CompareAceStandalone.CompareAce	Bio.AlignAce.CompareAceStandalone-module.html#CompareAce
Bio.AlignAce.Motif	Bio.AlignAce.Motif-module.html
Bio.AlignAce.Motif.__package__	Bio.AlignAce.Motif-module.html#__package__
Bio.AlignAce.Parser	Bio.AlignAce.Parser-module.html
Bio.AlignAce.Parser.__package__	Bio.AlignAce.Parser-module.html#__package__
Bio.AlignAce.Parser.StringTypes	Bio.AlignAce.Parser-module.html#StringTypes
Bio.AlignAce.Parser.xml_support	Bio.AlignAce.Parser-module.html#xml_support
Bio.AlignAce.Scanner	Bio.AlignAce.Scanner-module.html
Bio.AlignAce.Scanner.__package__	Bio.AlignAce.Scanner-module.html#__package__
Bio.AlignIO	Bio.AlignIO-module.html
Bio.AlignIO._test	Bio.AlignIO-module.html#_test
Bio.AlignIO._SeqIO_to_alignment_iterator	Bio.AlignIO-module.html#_SeqIO_to_alignment_iterator
Bio.AlignIO.parse	Bio.AlignIO-module.html#parse
Bio.AlignIO._FormatToIterator	Bio.AlignIO-module.html#_FormatToIterator
Bio.AlignIO.__package__	Bio.AlignIO-module.html#__package__
Bio.AlignIO.write	Bio.AlignIO-module.html#write
Bio.AlignIO.read	Bio.AlignIO-module.html#read
Bio.AlignIO._get_base_alphabet	Bio.Alphabet-module.html#_get_base_alphabet
Bio.AlignIO._force_alphabet	Bio.AlignIO-module.html#_force_alphabet
Bio.AlignIO.convert	Bio.AlignIO-module.html#convert
Bio.AlignIO._FormatToWriter	Bio.AlignIO-module.html#_FormatToWriter
Bio.AlignIO.ClustalIO	Bio.AlignIO.ClustalIO-module.html
Bio.AlignIO.ClustalIO.__package__	Bio.AlignIO.ClustalIO-module.html#__package__
Bio.AlignIO.EmbossIO	Bio.AlignIO.EmbossIO-module.html
Bio.AlignIO.EmbossIO.__package__	Bio.AlignIO.EmbossIO-module.html#__package__
Bio.AlignIO.FastaIO	Bio.AlignIO.FastaIO-module.html
Bio.AlignIO.FastaIO.__package__	Bio.AlignIO.FastaIO-module.html#__package__
Bio.AlignIO.Interfaces	Bio.AlignIO.Interfaces-module.html
Bio.AlignIO.Interfaces.__package__	Bio.AlignIO.Interfaces-module.html#__package__
Bio.AlignIO.NexusIO	Bio.AlignIO.NexusIO-module.html
Bio.AlignIO.NexusIO.NexusIterator	Bio.AlignIO.NexusIO-module.html#NexusIterator
Bio.AlignIO.NexusIO.__package__	Bio.AlignIO.NexusIO-module.html#__package__
Bio.AlignIO.PhylipIO	Bio.AlignIO.PhylipIO-module.html
Bio.AlignIO.PhylipIO.__package__	Bio.AlignIO.PhylipIO-module.html#__package__
Bio.AlignIO.StockholmIO	Bio.AlignIO.StockholmIO-module.html
Bio.AlignIO.StockholmIO._test	Bio.AlignIO.StockholmIO-module.html#_test
Bio.AlignIO.StockholmIO.__package__	Bio.AlignIO.StockholmIO-module.html#__package__
Bio.Alphabet	Bio.Alphabet-module.html
Bio.Alphabet.generic_rna	Bio.Alphabet-module.html#generic_rna
Bio.Alphabet.generic_nucleotide	Bio.Alphabet-module.html#generic_nucleotide
Bio.Alphabet.generic_dna	Bio.Alphabet-module.html#generic_dna
Bio.Alphabet.__package__	Bio.Alphabet-module.html#__package__
Bio.Alphabet.generic_protein	Bio.Alphabet-module.html#generic_protein
Bio.Alphabet._get_base_alphabet	Bio.Alphabet-module.html#_get_base_alphabet
Bio.Alphabet.single_letter_alphabet	Bio.Alphabet-module.html#single_letter_alphabet
Bio.Alphabet.generic_alphabet	Bio.Alphabet-module.html#generic_alphabet
Bio.Alphabet._consensus_alphabet	Bio.Alphabet-module.html#_consensus_alphabet
Bio.Alphabet._check_type_compatible	Bio.Alphabet-module.html#_check_type_compatible
Bio.Alphabet._consensus_base_alphabet	Bio.Alphabet-module.html#_consensus_base_alphabet
Bio.Alphabet.IUPAC	Bio.Alphabet.IUPAC-module.html
Bio.Alphabet.IUPAC.extended_protein	Bio.Alphabet.IUPAC-module.html#extended_protein
Bio.Alphabet.IUPAC.unambiguous_rna	Bio.Alphabet.IUPAC-module.html#unambiguous_rna
Bio.Alphabet.IUPAC.__package__	Bio.Alphabet.IUPAC-module.html#__package__
Bio.Alphabet.IUPAC._bootstrap	Bio.Alphabet.IUPAC-module.html#_bootstrap
Bio.Alphabet.IUPAC.unambiguous_dna	Bio.Alphabet.IUPAC-module.html#unambiguous_dna
Bio.Alphabet.IUPAC.protein	Bio.Alphabet.IUPAC-module.html#protein
Bio.Alphabet.IUPAC.ambiguous_dna	Bio.Alphabet.IUPAC-module.html#ambiguous_dna
Bio.Alphabet.IUPAC.ambiguous_rna	Bio.Alphabet.IUPAC-module.html#ambiguous_rna
Bio.Alphabet.IUPAC.extended_dna	Bio.Alphabet.IUPAC-module.html#extended_dna
Bio.Alphabet.Reduced	Bio.Alphabet.Reduced-module.html
Bio.Alphabet.Reduced.murphy_15_tab	Bio.Alphabet.Reduced-module.html#murphy_15_tab
Bio.Alphabet.Reduced.hp_model	Bio.Alphabet.Reduced-module.html#hp_model
Bio.Alphabet.Reduced.hp_model_tab	Bio.Alphabet.Reduced-module.html#hp_model_tab
Bio.Alphabet.Reduced.murphy_8_tab	Bio.Alphabet.Reduced-module.html#murphy_8_tab
Bio.Alphabet.Reduced.murphy_4_tab	Bio.Alphabet.Reduced-module.html#murphy_4_tab
Bio.Alphabet.Reduced.murphy_10	Bio.Alphabet.Reduced-module.html#murphy_10
Bio.Alphabet.Reduced.murphy_8	Bio.Alphabet.Reduced-module.html#murphy_8
Bio.Alphabet.Reduced.murphy_15	Bio.Alphabet.Reduced-module.html#murphy_15
Bio.Alphabet.Reduced.murphy_4	Bio.Alphabet.Reduced-module.html#murphy_4
Bio.Alphabet.Reduced.__package__	Bio.Alphabet.Reduced-module.html#__package__
Bio.Alphabet.Reduced.pc_5_table	Bio.Alphabet.Reduced-module.html#pc_5_table
Bio.Alphabet.Reduced.murphy_10_tab	Bio.Alphabet.Reduced-module.html#murphy_10_tab
Bio.Application	Bio.Application-module.html
Bio.Application._escape_filename	Bio.Application-module.html#_escape_filename
Bio.Application.generic_run	Bio.Application-module.html#generic_run
Bio.Application.__package__	Bio.Application-module.html#__package__
Bio.Application._test	Bio.Application-module.html#_test
Bio.Blast	Bio.Blast-module.html
Bio.Blast.__package__	Bio.Blast-module.html#__package__
Bio.Blast.Applications	Bio.Blast.Applications-module.html
Bio.Blast.Applications.__package__	Bio.Blast.Applications-module.html#__package__
Bio.Blast.NCBIStandalone	Bio.Blast.NCBIStandalone-module.html
Bio.Blast.NCBIStandalone._security_check_parameters	Bio.Blast.NCBIStandalone-module.html#_security_check_parameters
Bio.Blast.NCBIStandalone.xml_support	Bio.Blast.NCBIStandalone-module.html#xml_support
Bio.Blast.NCBIStandalone.__package__	Bio.Blast.NCBIStandalone-module.html#__package__
Bio.Blast.NCBIStandalone._invoke_blast	Bio.Blast.NCBIStandalone-module.html#_invoke_blast
Bio.Blast.NCBIStandalone.blastall	Bio.Blast.NCBIStandalone-module.html#blastall
Bio.Blast.NCBIStandalone.StringTypes	Bio.Blast.NCBIStandalone-module.html#StringTypes
Bio.Blast.NCBIStandalone._safe_int	Bio.Blast.NCBIStandalone-module.html#_safe_int
Bio.Blast.NCBIStandalone.blastpgp	Bio.Blast.NCBIStandalone-module.html#blastpgp
Bio.Blast.NCBIStandalone._safe_float	Bio.Blast.NCBIStandalone-module.html#_safe_float
Bio.Blast.NCBIStandalone._get_cols	Bio.Blast.NCBIStandalone-module.html#_get_cols
Bio.Blast.NCBIStandalone.rpsblast	Bio.Blast.NCBIStandalone-module.html#rpsblast
Bio.Blast.NCBIStandalone._re_search	Bio.Blast.NCBIStandalone-module.html#_re_search
Bio.Blast.NCBIStandalone._escape_filename	Bio.Application-module.html#_escape_filename
Bio.Blast.NCBIWWW	Bio.Blast.NCBIWWW-module.html
Bio.Blast.NCBIWWW.qblast	Bio.Blast.NCBIWWW-module.html#qblast
Bio.Blast.NCBIWWW.__package__	Bio.Blast.NCBIWWW-module.html#__package__
Bio.Blast.NCBIWWW._parse_qblast_ref_page	Bio.Blast.NCBIWWW-module.html#_parse_qblast_ref_page
Bio.Blast.NCBIXML	Bio.Blast.NCBIXML-module.html
Bio.Blast.NCBIXML.read	Bio.Blast.NCBIXML-module.html#read
Bio.Blast.NCBIXML.__package__	Bio.Blast.NCBIXML-module.html#__package__
Bio.Blast.NCBIXML.parse	Bio.Blast.NCBIXML-module.html#parse
Bio.Blast.ParseBlastTable	Bio.Blast.ParseBlastTable-module.html
Bio.Blast.ParseBlastTable.reader_keywords	Bio.Blast.ParseBlastTable-module.html#reader_keywords
Bio.Blast.ParseBlastTable.__package__	Bio.Blast.ParseBlastTable-module.html#__package__
Bio.Blast.Record	Bio.Blast.Record-module.html
Bio.Blast.Record.__package__	Bio.Blast.Record-module.html#__package__
Bio.CAPS	Bio.CAPS-module.html
Bio.CAPS.__package__	Bio.CAPS-module.html#__package__
Bio.Clustalw	Bio.Clustalw-module.html
Bio.Clustalw.do_alignment	Bio.Clustalw-module.html#do_alignment
Bio.Clustalw._escape_filename	Bio.Application-module.html#_escape_filename
Bio.Clustalw.__package__	Bio.Clustalw-module.html#__package__
Bio.Clustalw.parse_file	Bio.Clustalw-module.html#parse_file
Bio.Clustalw._test	Bio.Clustalw-module.html#_test
Bio.Cluster	Bio.Cluster-module.html
Bio.Cluster.read	Bio.Cluster-module.html#read
Bio.Cluster._savetree	Bio.Cluster-module.html#_savetree
Bio.Cluster._treesort	Bio.Cluster-module.html#_treesort
Bio.Compass	Bio.Compass-module.html
Bio.Compass.__package__	Bio.Compass-module.html#__package__
Bio.Compass.StringTypes	Bio.Compass-module.html#StringTypes
Bio.Compass.xml_support	Bio.Compass-module.html#xml_support
Bio.Crystal	Bio.Crystal-module.html
Bio.Crystal.wrap_line	Bio.Crystal-module.html#wrap_line
Bio.Crystal.validate_key	Bio.Crystal-module.html#validate_key
Bio.Crystal.__package__	Bio.Crystal-module.html#__package__
Bio.Data	Bio.Data-module.html
Bio.Data.__package__	Bio.Data-module.html#__package__
Bio.Data.CodonTable	Bio.Data.CodonTable-module.html
Bio.Data.CodonTable.ambiguous_generic_by_id	Bio.Data.CodonTable-module.html#ambiguous_generic_by_id
Bio.Data.CodonTable.ambiguous_rna_by_name	Bio.Data.CodonTable-module.html#ambiguous_rna_by_name
Bio.Data.CodonTable.ambiguous_rna_by_id	Bio.Data.CodonTable-module.html#ambiguous_rna_by_id
Bio.Data.CodonTable.standard_rna_table	Bio.Data.CodonTable-module.html#standard_rna_table
Bio.Data.CodonTable.ambiguous_dna_by_id	Bio.Data.CodonTable-module.html#ambiguous_dna_by_id
Bio.Data.CodonTable.generic_by_id	Bio.Data.CodonTable-module.html#generic_by_id
Bio.Data.CodonTable.unambiguous_rna_by_name	Bio.Data.CodonTable-module.html#unambiguous_rna_by_name
Bio.Data.CodonTable.unambiguous_rna_by_id	Bio.Data.CodonTable-module.html#unambiguous_rna_by_id
Bio.Data.CodonTable.__package__	Bio.Data.CodonTable-module.html#__package__
Bio.Data.CodonTable.ambiguous_dna_by_name	Bio.Data.CodonTable-module.html#ambiguous_dna_by_name
Bio.Data.CodonTable.standard_dna_table	Bio.Data.CodonTable-module.html#standard_dna_table
Bio.Data.CodonTable.ambiguous_generic_by_name	Bio.Data.CodonTable-module.html#ambiguous_generic_by_name
Bio.Data.CodonTable.unambiguous_dna_by_id	Bio.Data.CodonTable-module.html#unambiguous_dna_by_id
Bio.Data.CodonTable.make_back_table	Bio.Data.CodonTable-module.html#make_back_table
Bio.Data.CodonTable.list_ambiguous_codons	Bio.Data.CodonTable-module.html#list_ambiguous_codons
Bio.Data.CodonTable.register_ncbi_table	Bio.Data.CodonTable-module.html#register_ncbi_table
Bio.Data.CodonTable.list_possible_proteins	Bio.Data.CodonTable-module.html#list_possible_proteins
Bio.Data.CodonTable.unambiguous_dna_by_name	Bio.Data.CodonTable-module.html#unambiguous_dna_by_name
Bio.Data.CodonTable.generic_by_name	Bio.Data.CodonTable-module.html#generic_by_name
Bio.Data.IUPACData	Bio.Data.IUPACData-module.html
Bio.Data.IUPACData.avg_ambiguous_rna_weights	Bio.Data.IUPACData-module.html#avg_ambiguous_rna_weights
Bio.Data.IUPACData.protein_letters	Bio.Data.IUPACData-module.html#protein_letters
Bio.Data.IUPACData.__package__	Bio.Data.IUPACData-module.html#__package__
Bio.Data.IUPACData.ambiguous_dna_complement	Bio.Data.IUPACData-module.html#ambiguous_dna_complement
Bio.Data.IUPACData.protein_weight_ranges	Bio.Data.IUPACData-module.html#protein_weight_ranges
Bio.Data.IUPACData.avg_extended_protein_weights	Bio.Data.IUPACData-module.html#avg_extended_protein_weights
Bio.Data.IUPACData.extended_protein_values	Bio.Data.IUPACData-module.html#extended_protein_values
Bio.Data.IUPACData.unambiguous_dna_weight_ranges	Bio.Data.IUPACData-module.html#unambiguous_dna_weight_ranges
Bio.Data.IUPACData.extended_protein_letters	Bio.Data.IUPACData-module.html#extended_protein_letters
Bio.Data.IUPACData.ambiguous_rna_complement	Bio.Data.IUPACData-module.html#ambiguous_rna_complement
Bio.Data.IUPACData.extended_protein_weight_ranges	Bio.Data.IUPACData-module.html#extended_protein_weight_ranges
Bio.Data.IUPACData.ambiguous_rna_values	Bio.Data.IUPACData-module.html#ambiguous_rna_values
Bio.Data.IUPACData.ambiguous_rna_weight_ranges	Bio.Data.IUPACData-module.html#ambiguous_rna_weight_ranges
Bio.Data.IUPACData.avg_ambiguous_dna_weights	Bio.Data.IUPACData-module.html#avg_ambiguous_dna_weights
Bio.Data.IUPACData.unambiguous_rna_letters	Bio.Data.IUPACData-module.html#unambiguous_rna_letters
Bio.Data.IUPACData.ambiguous_dna_values	Bio.Data.IUPACData-module.html#ambiguous_dna_values
Bio.Data.IUPACData.ambiguous_dna_weight_ranges	Bio.Data.IUPACData-module.html#ambiguous_dna_weight_ranges
Bio.Data.IUPACData._make_ranges	Bio.Data.IUPACData-module.html#_make_ranges
Bio.Data.IUPACData.unambiguous_dna_letters	Bio.Data.IUPACData-module.html#unambiguous_dna_letters
Bio.Data.IUPACData.ambiguous_rna_letters	Bio.Data.IUPACData-module.html#ambiguous_rna_letters
Bio.Data.IUPACData.protein_weights	Bio.Data.IUPACData-module.html#protein_weights
Bio.Data.IUPACData.unambiguous_rna_weights	Bio.Data.IUPACData-module.html#unambiguous_rna_weights
Bio.Data.IUPACData._make_ambiguous_ranges	Bio.Data.IUPACData-module.html#_make_ambiguous_ranges
Bio.Data.IUPACData.ambiguous_dna_letters	Bio.Data.IUPACData-module.html#ambiguous_dna_letters
Bio.Data.IUPACData.unambiguous_rna_weight_ranges	Bio.Data.IUPACData-module.html#unambiguous_rna_weight_ranges
Bio.Data.IUPACData.unambiguous_dna_weights	Bio.Data.IUPACData-module.html#unambiguous_dna_weights
Bio.Data.IUPACData.extended_dna_letters	Bio.Data.IUPACData-module.html#extended_dna_letters
Bio.DocSQL	Bio.DocSQL-module.html
Bio.DocSQL._check_is_public	Bio.DocSQL-module.html#_check_is_public
Bio.DocSQL.connection	Bio.DocSQL-module.html#connection
Bio.DocSQL._test	Bio.DocSQL-module.html#_test
Bio.EZRetrieve	Bio.EZRetrieve-module.html
Bio.EZRetrieve.parse_single	Bio.EZRetrieve-module.html#parse_single
Bio.EZRetrieve.retrieve_single	Bio.EZRetrieve-module.html#retrieve_single
Bio.EZRetrieve.__warningregistry__	Bio.EZRetrieve-module.html#__warningregistry__
Bio.EZRetrieve.__package__	Bio.EZRetrieve-module.html#__package__
Bio.Emboss	Bio.Emboss-module.html
Bio.Emboss.__package__	Bio.Emboss-module.html#__package__
Bio.Emboss.Applications	Bio.Emboss.Applications-module.html
Bio.Emboss.Applications.__package__	Bio.Emboss.Applications-module.html#__package__
Bio.Emboss.Primer3	Bio.Emboss.Primer3-module.html
Bio.Emboss.Primer3.read	Bio.Emboss.Primer3-module.html#read
Bio.Emboss.Primer3.__package__	Bio.Emboss.Primer3-module.html#__package__
Bio.Emboss.PrimerSearch	Bio.Emboss.PrimerSearch-module.html
Bio.Emboss.PrimerSearch.read	Bio.Emboss.PrimerSearch-module.html#read
Bio.Emboss.PrimerSearch.__package__	Bio.Emboss.PrimerSearch-module.html#__package__
Bio.Encodings	Bio.Encodings-module.html
Bio.Encodings.__package__	Bio.Encodings-module.html#__package__
Bio.Encodings.IUPACEncoding	Bio.Encodings.IUPACEncoding-module.html
Bio.Encodings.IUPACEncoding.obj	Bio.Encodings.IUPACEncoding-module.html#obj
Bio.Encodings.IUPACEncoding.name	Bio.Encodings.IUPACEncoding-module.html#name
Bio.Encodings.IUPACEncoding.__package__	Bio.Encodings.IUPACEncoding-module.html#__package__
Bio.Encodings.IUPACEncoding.set_prop	Bio.Encodings.IUPACEncoding-module.html#set_prop
Bio.Encodings.IUPACEncoding.property	Bio.Encodings.IUPACEncoding-module.html#property
Bio.Encodings.IUPACEncoding.id	Bio.Encodings.IUPACEncoding-module.html#id
Bio.Entrez	Bio.Entrez-module.html
Bio.Entrez.esearch	Bio.Entrez-module.html#esearch
Bio.Entrez.egquery	Bio.Entrez-module.html#egquery
Bio.Entrez.elink	Bio.Entrez-module.html#elink
Bio.Entrez.esummary	Bio.Entrez-module.html#esummary
Bio.Entrez.read	Bio.Entrez-module.html#read
Bio.Entrez._open	Bio.Entrez-module.html#_open
Bio.Entrez.__package__	Bio.Entrez-module.html#__package__
Bio.Entrez.parse	Bio.Entrez-module.html#parse
Bio.Entrez.efetch	Bio.Entrez-module.html#efetch
Bio.Entrez.espell	Bio.Entrez-module.html#espell
Bio.Entrez.einfo	Bio.Entrez-module.html#einfo
Bio.Entrez.email	Bio.Entrez-module.html#email
Bio.Entrez.epost	Bio.Entrez-module.html#epost
Bio.Entrez.Parser	Bio.Entrez.Parser-module.html
Bio.Entrez.Parser.__package__	Bio.Entrez.Parser-module.html#__package__
Bio.Enzyme	Bio.Enzyme-module.html
Bio.Enzyme.__package__	Bio.Enzyme-module.html#__package__
Bio.Enzyme.StringTypes	Bio.Enzyme-module.html#StringTypes
Bio.Enzyme.xml_support	Bio.Enzyme-module.html#xml_support
Bio.ExPASy	Bio.ExPASy-module.html
Bio.ExPASy.get_sprot_raw	Bio.ExPASy-module.html#get_sprot_raw
Bio.ExPASy.scanprosite1	Bio.ExPASy-module.html#scanprosite1
Bio.ExPASy.__package__	Bio.ExPASy-module.html#__package__
Bio.ExPASy.get_prosite_raw	Bio.ExPASy-module.html#get_prosite_raw
Bio.ExPASy.sprot_search_ful	Bio.ExPASy-module.html#sprot_search_ful
Bio.ExPASy.sprot_search_de	Bio.ExPASy-module.html#sprot_search_de
Bio.ExPASy.get_prodoc_entry	Bio.ExPASy-module.html#get_prodoc_entry
Bio.ExPASy.get_prosite_entry	Bio.ExPASy-module.html#get_prosite_entry
Bio.ExPASy.Enzyme	Bio.ExPASy.Enzyme-module.html
Bio.ExPASy.Enzyme.parse	Bio.ExPASy.Enzyme-module.html#parse
Bio.ExPASy.Enzyme.__read	Bio.ExPASy.Enzyme-module.html#__read
Bio.ExPASy.Enzyme.read	Bio.ExPASy.Enzyme-module.html#read
Bio.ExPASy.Enzyme.__package__	Bio.ExPASy.Enzyme-module.html#__package__
Bio.ExPASy.Prodoc	Bio.ExPASy.Prodoc-module.html
Bio.ExPASy.Prodoc.__read_reference_start	Bio.ExPASy.Prodoc-module.html#__read_reference_start
Bio.ExPASy.Prodoc.__read_copyright_line	Bio.ExPASy.Prodoc-module.html#__read_copyright_line
Bio.ExPASy.Prodoc.__read_text_line	Bio.ExPASy.Prodoc-module.html#__read_text_line
Bio.ExPASy.Prodoc.__read_reference_line	Bio.ExPASy.Prodoc-module.html#__read_reference_line
Bio.ExPASy.Prodoc.__package__	Bio.ExPASy.Prodoc-module.html#__package__
Bio.ExPASy.Prodoc.parse	Bio.ExPASy.Prodoc-module.html#parse
Bio.ExPASy.Prodoc.read	Bio.ExPASy.Prodoc-module.html#read
Bio.ExPASy.Prodoc.__read_prosite_reference_line	Bio.ExPASy.Prodoc-module.html#__read_prosite_reference_line
Bio.ExPASy.Prodoc.__read	Bio.ExPASy.Prodoc-module.html#__read
Bio.ExPASy.Prosite	Bio.ExPASy.Prosite-module.html
Bio.ExPASy.Prosite.parse	Bio.ExPASy.Prosite-module.html#parse
Bio.ExPASy.Prosite.__read	Bio.ExPASy.Prosite-module.html#__read
Bio.ExPASy.Prosite.read	Bio.ExPASy.Prosite-module.html#read
Bio.ExPASy.Prosite.__package__	Bio.ExPASy.Prosite-module.html#__package__
Bio.ExPASy.ScanProsite	Bio.ExPASy.ScanProsite-module.html
Bio.ExPASy.ScanProsite.scan	Bio.ExPASy.ScanProsite-module.html#scan
Bio.ExPASy.ScanProsite.read	Bio.ExPASy.ScanProsite-module.html#read
Bio.ExPASy.ScanProsite.__package__	Bio.ExPASy.ScanProsite-module.html#__package__
Bio.FSSP	Bio.FSSP-module.html
Bio.FSSP.alignments_title	Bio.FSSP-module.html#alignments_title
Bio.FSSP.equiv_title	Bio.FSSP-module.html#equiv_title
Bio.FSSP.read_fssp	Bio.FSSP-module.html#read_fssp
Bio.FSSP.__package__	Bio.FSSP-module.html#__package__
Bio.FSSP.alignments_rec	Bio.FSSP-module.html#alignments_rec
Bio.FSSP.header_records	Bio.FSSP-module.html#header_records
Bio.FSSP.summary_title	Bio.FSSP-module.html#summary_title
Bio.FSSP.summary_rec	Bio.FSSP-module.html#summary_rec
Bio.FSSP.FSSPTools	Bio.FSSP.FSSPTools-module.html
Bio.FSSP.FSSPTools.__package__	Bio.FSSP.FSSPTools-module.html#__package__
Bio.FSSP.FSSPTools.filter	Bio.FSSP.FSSPTools-module.html#filter
Bio.FSSP.FSSPTools.mult_align	Bio.FSSP.FSSPTools-module.html#mult_align
Bio.FSSP.FSSPTools.name_filter	Bio.FSSP.FSSPTools-module.html#name_filter
Bio.FSSP.fssp_rec	Bio.FSSP.fssp_rec-module.html
Bio.FSSP.fssp_rec.__package__	Bio.FSSP.fssp_rec-module.html#__package__
Bio.Fasta	Bio.Fasta-module.html
Bio.Fasta.__warningregistry__	Bio.Fasta-module.html#__warningregistry__
Bio.Fasta.__package__	Bio.Fasta-module.html#__package__
Bio.Fasta.FastaAlign	Bio.Fasta.FastaAlign-module.html
Bio.Fasta.FastaAlign.__package__	Bio.Fasta.FastaAlign-module.html#__package__
Bio.Fasta.FastaAlign.parse_file	Bio.Fasta.FastaAlign-module.html#parse_file
Bio.File	Bio.File-module.html
Bio.File.__package__	Bio.File-module.html#__package__
Bio.FilteredReader	Bio.FilteredReader-module.html
Bio.FilteredReader.remove_empty_line	Bio.FilteredReader-module.html#remove_empty_line
Bio.FilteredReader.__warningregistry__	Bio.FilteredReader-module.html#__warningregistry__
Bio.FilteredReader.dump_saved	Bio.FilteredReader-module.html#dump_saved
Bio.FilteredReader.fix_punctuation	Bio.FilteredReader-module.html#fix_punctuation
Bio.FilteredReader.remove_useless_dot	Bio.FilteredReader-module.html#remove_useless_dot
Bio.FilteredReader.__package__	Bio.FilteredReader-module.html#__package__
Bio.FilteredReader.remove_leading_whitespace	Bio.FilteredReader-module.html#remove_leading_whitespace
Bio.FilteredReader.has_trailing_linefeed	Bio.FilteredReader-module.html#has_trailing_linefeed
Bio.GA	Bio.GA-module.html
Bio.GA.__package__	Bio.GA-module.html#__package__
Bio.GA.Crossover	Bio.GA.Crossover-module.html
Bio.GA.Crossover.__package__	Bio.GA.Crossover-module.html#__package__
Bio.GA.Crossover.General	Bio.GA.Crossover.General-module.html
Bio.GA.Crossover.General.__package__	Bio.GA.Crossover.General-module.html#__package__
Bio.GA.Crossover.GeneralPoint	Bio.GA.Crossover.GeneralPoint-module.html
Bio.GA.Crossover.GeneralPoint.__package__	Bio.GA.Crossover.GeneralPoint-module.html#__package__
Bio.GA.Crossover.Point	Bio.GA.Crossover.Point-module.html
Bio.GA.Crossover.Point.__package__	Bio.GA.Crossover.Point-module.html#__package__
Bio.GA.Crossover.TwoPoint	Bio.GA.Crossover.TwoPoint-module.html
Bio.GA.Crossover.TwoPoint.__package__	Bio.GA.Crossover.TwoPoint-module.html#__package__
Bio.GA.Crossover.Uniform	Bio.GA.Crossover.Uniform-module.html
Bio.GA.Crossover.Uniform.__package__	Bio.GA.Crossover.Uniform-module.html#__package__
Bio.GA.Evolver	Bio.GA.Evolver-module.html
Bio.GA.Evolver.__package__	Bio.GA.Evolver-module.html#__package__
Bio.GA.Mutation	Bio.GA.Mutation-module.html
Bio.GA.Mutation.__package__	Bio.GA.Mutation-module.html#__package__
Bio.GA.Mutation.General	Bio.GA.Mutation.General-module.html
Bio.GA.Mutation.General.__package__	Bio.GA.Mutation.General-module.html#__package__
Bio.GA.Mutation.Simple	Bio.GA.Mutation.Simple-module.html
Bio.GA.Mutation.Simple.__package__	Bio.GA.Mutation.Simple-module.html#__package__
Bio.GA.Organism	Bio.GA.Organism-module.html
Bio.GA.Organism.function_population	Bio.GA.Organism-module.html#function_population
Bio.GA.Organism.random_population	Bio.GA.Organism-module.html#random_population
Bio.GA.Organism.__package__	Bio.GA.Organism-module.html#__package__
Bio.GA.Repair	Bio.GA.Repair-module.html
Bio.GA.Repair.__package__	Bio.GA.Repair-module.html#__package__
Bio.GA.Repair.Stabilizing	Bio.GA.Repair.Stabilizing-module.html
Bio.GA.Repair.Stabilizing.__package__	Bio.GA.Repair.Stabilizing-module.html#__package__
Bio.GA.Selection	Bio.GA.Selection-module.html
Bio.GA.Selection.__package__	Bio.GA.Selection-module.html#__package__
Bio.GA.Selection.Abstract	Bio.GA.Selection.Abstract-module.html
Bio.GA.Selection.Abstract.__package__	Bio.GA.Selection.Abstract-module.html#__package__
Bio.GA.Selection.Diversity	Bio.GA.Selection.Diversity-module.html
Bio.GA.Selection.Diversity.__package__	Bio.GA.Selection.Diversity-module.html#__package__
Bio.GA.Selection.RouletteWheel	Bio.GA.Selection.RouletteWheel-module.html
Bio.GA.Selection.RouletteWheel.__package__	Bio.GA.Selection.RouletteWheel-module.html#__package__
Bio.GA.Selection.Tournament	Bio.GA.Selection.Tournament-module.html
Bio.GA.Selection.Tournament.__package__	Bio.GA.Selection.Tournament-module.html#__package__
Bio.GFF	Bio.GFF-module.html
Bio.GFF._test	Bio.GFF-module.html#_test
Bio.GFF.object2fgroup_sql	Bio.GFF-module.html#object2fgroup_sql
Bio.GFF.DEFAULT_ALPHABET	Bio.GFF-module.html#DEFAULT_ALPHABET
Bio.GFF.object_split	Bio.GFF-module.html#object_split
Bio.GFF.GenericTools	Bio.GFF.GenericTools-module.html
Bio.GFF.GenericTools.dump_list	Bio.GFF.GenericTools-module.html#dump_list
Bio.GFF.GenericTools.is_nestable	Bio.GFF.GenericTools-module.html#is_nestable
Bio.GFF.GenericTools._test	Bio.GFF.GenericTools-module.html#_test
Bio.GFF.GenericTools.defline_text	Bio.GFF.GenericTools-module.html#defline_text
Bio.GFF.GenericTools.all	Bio.GFF.GenericTools-module.html#all
Bio.GFF.GenericTools.reverse_text	Bio.GFF.GenericTools-module.html#reverse_text
Bio.GFF.binning	Bio.GFF.binning-module.html
Bio.GFF.binning.bin	Bio.GFF.binning-module.html#bin
Bio.GFF.binning.name	Bio.GFF.binning-module.html#name
Bio.GFF.binning.top	Bio.GFF.binning-module.html#top
Bio.GFF.binning.bot	Bio.GFF.binning-module.html#bot
Bio.GFF.binning.query	Bio.GFF.binning-module.html#query
Bio.GFF.binning._test	Bio.GFF.binning-module.html#_test
Bio.GFF.easy	Bio.GFF.easy-module.html
Bio.GFF.easy._test	Bio.GFF.easy-module.html#_test
Bio.GFF.easy.fasta_multi	Bio.GFF.easy-module.html#fasta_multi
Bio.GFF.easy.fasta_write	Bio.GFF.easy-module.html#fasta_write
Bio.GFF.easy.open_file	Bio.GFF.easy-module.html#open_file
Bio.GFF.easy.record_coords	Bio.GFF.easy-module.html#record_coords
Bio.GFF.easy.record_subseq	Bio.GFF.easy-module.html#record_subseq
Bio.GFF.easy.fasta_readrecords	Bio.GFF.easy-module.html#fasta_readrecords
Bio.GFF.easy.fasta_single	Bio.GFF.easy-module.html#fasta_single
Bio.GFF.easy.genbank_single	Bio.GFF.easy-module.html#genbank_single
Bio.GFF.easy.record_sequence	Bio.GFF.easy-module.html#record_sequence
Bio.GFF.easy.re_complement	Bio.GFF.easy-module.html#re_complement
Bio.GFF.easy.re_fuzzy	Bio.GFF.easy-module.html#re_fuzzy
Bio.GFF.easy.re_join	Bio.GFF.easy-module.html#re_join
Bio.GFF.easy._hashname	Bio.GFF.easy-module.html#_hashname
Bio.GFF.easy.re_seqname	Bio.GFF.easy-module.html#re_seqname
Bio.GFF.easy.re_dotdot	Bio.GFF.easy-module.html#re_dotdot
Bio.GenBank	Bio.GenBank-module.html
Bio.GenBank.search_for	Bio.GenBank-module.html#search_for
Bio.GenBank.FEATURE_QUALIFIER_SPACER	Bio.GenBank-module.html#FEATURE_QUALIFIER_SPACER
Bio.GenBank.FEATURE_KEY_INDENT	Bio.GenBank-module.html#FEATURE_KEY_INDENT
Bio.GenBank.__package__	Bio.GenBank-module.html#__package__
Bio.GenBank.FEATURE_QUALIFIER_INDENT	Bio.GenBank-module.html#FEATURE_QUALIFIER_INDENT
Bio.GenBank.GENBANK_INDENT	Bio.GenBank-module.html#GENBANK_INDENT
Bio.GenBank.GENBANK_SPACER	Bio.GenBank-module.html#GENBANK_SPACER
Bio.GenBank.FEATURE_KEY_SPACER	Bio.GenBank-module.html#FEATURE_KEY_SPACER
Bio.GenBank.download_many	Bio.GenBank-module.html#download_many
Bio.GenBank.LocationParser	Bio.GenBank.LocationParser-module.html
Bio.GenBank.LocationParser.scan	Bio.GenBank.LocationParser-module.html#scan
Bio.GenBank.LocationParser.parse	Bio.GenBank.LocationParser-module.html#parse
Bio.GenBank.LocationParser.__package__	Bio.GenBank.LocationParser-module.html#__package__
Bio.GenBank.LocationParser._cached_scanner	Bio.GenBank.LocationParser-module.html#_cached_scanner
Bio.GenBank.LocationParser._cached_parser	Bio.GenBank.LocationParser-module.html#_cached_parser
Bio.GenBank.Record	Bio.GenBank.Record-module.html
Bio.GenBank.Record._wrapped_genbank	Bio.GenBank.Record-module.html#_wrapped_genbank
Bio.GenBank.Record.__package__	Bio.GenBank.Record-module.html#__package__
Bio.GenBank.Record._indent_genbank	Bio.GenBank.Record-module.html#_indent_genbank
Bio.GenBank.Scanner	Bio.GenBank.Scanner-module.html
Bio.GenBank.Scanner.__package__	Bio.GenBank.Scanner-module.html#__package__
Bio.GenBank.utils	Bio.GenBank.utils-module.html
Bio.GenBank.utils.__package__	Bio.GenBank.utils-module.html#__package__
Bio.Geo	Bio.Geo-module.html
Bio.Geo.parse	Bio.Geo-module.html#parse
Bio.Geo._read_key_value	Bio.Geo-module.html#_read_key_value
Bio.Geo.__package__	Bio.Geo-module.html#__package__
Bio.Geo.Record	Bio.Geo.Record-module.html
Bio.Geo.Record.out_block	Bio.Geo.Record-module.html#out_block
Bio.Geo.Record.__package__	Bio.Geo.Record-module.html#__package__
Bio.Graphics	Bio.Graphics-module.html
Bio.Graphics._write	Bio.Graphics-module.html#_write
Bio.Graphics.__package__	Bio.Graphics-module.html#__package__
Bio.Graphics.BasicChromosome	Bio.Graphics.BasicChromosome-module.html
Bio.Graphics.BasicChromosome._write	Bio.Graphics-module.html#_write
Bio.Graphics.BasicChromosome.__package__	Bio.Graphics.BasicChromosome-module.html#__package__
Bio.Graphics.Comparative	Bio.Graphics.Comparative-module.html
Bio.Graphics.Comparative.__package__	Bio.Graphics.Comparative-module.html#__package__
Bio.Graphics.Comparative._write	Bio.Graphics-module.html#_write
Bio.Graphics.DisplayRepresentation	Bio.Graphics.DisplayRepresentation-module.html
Bio.Graphics.DisplayRepresentation.RAINBOW_COLORS	Bio.Graphics.DisplayRepresentation-module.html#RAINBOW_COLORS
Bio.Graphics.DisplayRepresentation.__package__	Bio.Graphics.DisplayRepresentation-module.html#__package__
Bio.Graphics.Distribution	Bio.Graphics.Distribution-module.html
Bio.Graphics.Distribution.__package__	Bio.Graphics.Distribution-module.html#__package__
Bio.Graphics.Distribution._write	Bio.Graphics-module.html#_write
Bio.Graphics.GenomeDiagram	Bio.Graphics.GenomeDiagram-module.html
Bio.Graphics.GenomeDiagram.__package__	Bio.Graphics.GenomeDiagram-module.html#__package__
Bio.Graphics.GenomeDiagram._AbstractDrawer	Bio.Graphics.GenomeDiagram._AbstractDrawer-module.html
Bio.Graphics.GenomeDiagram._AbstractDrawer.angle2trig	Bio.Graphics.GenomeDiagram._AbstractDrawer-module.html#angle2trig
Bio.Graphics.GenomeDiagram._AbstractDrawer.page_sizes	Bio.Graphics.GenomeDiagram._AbstractDrawer-module.html#page_sizes
Bio.Graphics.GenomeDiagram._AbstractDrawer.draw_box	Bio.Graphics.GenomeDiagram._AbstractDrawer-module.html#draw_box
Bio.Graphics.GenomeDiagram._AbstractDrawer.__package__	Bio.Graphics.GenomeDiagram._AbstractDrawer-module.html#__package__
Bio.Graphics.GenomeDiagram._AbstractDrawer.intermediate_points	Bio.Graphics.GenomeDiagram._AbstractDrawer-module.html#intermediate_points
Bio.Graphics.GenomeDiagram._AbstractDrawer.draw_polygon	Bio.Graphics.GenomeDiagram._AbstractDrawer-module.html#draw_polygon
Bio.Graphics.GenomeDiagram._AbstractDrawer.draw_arrow	Bio.Graphics.GenomeDiagram._AbstractDrawer-module.html#draw_arrow
Bio.Graphics.GenomeDiagram._CircularDrawer	Bio.Graphics.GenomeDiagram._CircularDrawer-module.html
Bio.Graphics.GenomeDiagram._CircularDrawer.__package__	Bio.Graphics.GenomeDiagram._CircularDrawer-module.html#__package__
Bio.Graphics.GenomeDiagram._CircularDrawer.intermediate_points	Bio.Graphics.GenomeDiagram._AbstractDrawer-module.html#intermediate_points
Bio.Graphics.GenomeDiagram._CircularDrawer.draw_polygon	Bio.Graphics.GenomeDiagram._AbstractDrawer-module.html#draw_polygon
Bio.Graphics.GenomeDiagram._Colors	Bio.Graphics.GenomeDiagram._Colors-module.html
Bio.Graphics.GenomeDiagram._Colors.__package__	Bio.Graphics.GenomeDiagram._Colors-module.html#__package__
Bio.Graphics.GenomeDiagram._Diagram	Bio.Graphics.GenomeDiagram._Diagram-module.html
Bio.Graphics.GenomeDiagram._Diagram.__package__	Bio.Graphics.GenomeDiagram._Diagram-module.html#__package__
Bio.Graphics.GenomeDiagram._Diagram.renderPM	Bio.Graphics.GenomeDiagram._Diagram-module.html#renderPM
Bio.Graphics.GenomeDiagram._Diagram._write	Bio.Graphics-module.html#_write
Bio.Graphics.GenomeDiagram._Feature	Bio.Graphics.GenomeDiagram._Feature-module.html
Bio.Graphics.GenomeDiagram._Feature.__package__	Bio.Graphics.GenomeDiagram._Feature-module.html#__package__
Bio.Graphics.GenomeDiagram._FeatureSet	Bio.Graphics.GenomeDiagram._FeatureSet-module.html
Bio.Graphics.GenomeDiagram._FeatureSet.__package__	Bio.Graphics.GenomeDiagram._FeatureSet-module.html#__package__
Bio.Graphics.GenomeDiagram._Graph	Bio.Graphics.GenomeDiagram._Graph-module.html
Bio.Graphics.GenomeDiagram._Graph.__package__	Bio.Graphics.GenomeDiagram._Graph-module.html#__package__
Bio.Graphics.GenomeDiagram._GraphSet	Bio.Graphics.GenomeDiagram._GraphSet-module.html
Bio.Graphics.GenomeDiagram._GraphSet.__package__	Bio.Graphics.GenomeDiagram._GraphSet-module.html#__package__
Bio.Graphics.GenomeDiagram._LinearDrawer	Bio.Graphics.GenomeDiagram._LinearDrawer-module.html
Bio.Graphics.GenomeDiagram._LinearDrawer.angle2trig	Bio.Graphics.GenomeDiagram._AbstractDrawer-module.html#angle2trig
Bio.Graphics.GenomeDiagram._LinearDrawer.draw_box	Bio.Graphics.GenomeDiagram._AbstractDrawer-module.html#draw_box
Bio.Graphics.GenomeDiagram._LinearDrawer.__package__	Bio.Graphics.GenomeDiagram._LinearDrawer-module.html#__package__
Bio.Graphics.GenomeDiagram._LinearDrawer.intermediate_points	Bio.Graphics.GenomeDiagram._AbstractDrawer-module.html#intermediate_points
Bio.Graphics.GenomeDiagram._LinearDrawer.draw_arrow	Bio.Graphics.GenomeDiagram._AbstractDrawer-module.html#draw_arrow
Bio.Graphics.GenomeDiagram._Track	Bio.Graphics.GenomeDiagram._Track-module.html
Bio.Graphics.GenomeDiagram._Track.__package__	Bio.Graphics.GenomeDiagram._Track-module.html#__package__
Bio.HMM	Bio.HMM-module.html
Bio.HMM.__package__	Bio.HMM-module.html#__package__
Bio.HMM.DynamicProgramming	Bio.HMM.DynamicProgramming-module.html
Bio.HMM.DynamicProgramming.__package__	Bio.HMM.DynamicProgramming-module.html#__package__
Bio.HMM.MarkovModel	Bio.HMM.MarkovModel-module.html
Bio.HMM.MarkovModel.__package__	Bio.HMM.MarkovModel-module.html#__package__
Bio.HMM.Trainer	Bio.HMM.Trainer-module.html
Bio.HMM.Trainer.__package__	Bio.HMM.Trainer-module.html#__package__
Bio.HMM.Utilities	Bio.HMM.Utilities-module.html
Bio.HMM.Utilities.pretty_print_prediction	Bio.HMM.Utilities-module.html#pretty_print_prediction
Bio.HMM.Utilities.__package__	Bio.HMM.Utilities-module.html#__package__
Bio.HotRand	Bio.HotRand-module.html
Bio.HotRand.nums	Bio.HotRand-module.html#nums
Bio.HotRand.hex_convert	Bio.HotRand-module.html#hex_convert
Bio.HotRand.__package__	Bio.HotRand-module.html#__package__
Bio.HotRand.hot_random	Bio.HotRand-module.html#hot_random
Bio.HotRand.byte_concat	Bio.HotRand-module.html#byte_concat
Bio.Index	Bio.Index-module.html
Bio.Index.__package__	Bio.Index-module.html#__package__
Bio.InterPro	Bio.InterPro-module.html
Bio.InterPro.pairlist_to_dict	Bio.InterPro-module.html#pairlist_to_dict
Bio.InterPro.__package__	Bio.InterPro-module.html#__package__
Bio.InterPro.get_interpro_entry	Bio.InterPro-module.html#get_interpro_entry
Bio.KDTree	Bio.KDTree-module.html
Bio.KDTree.KDTree	Bio.KDTree.KDTree-module.html
Bio.KDTree.KDTree._neighbor_test	Bio.KDTree.KDTree-module.html#_neighbor_test
Bio.KDTree.KDTree._dist	Bio.KDTree.KDTree-module.html#_dist
Bio.KDTree.KDTree._test	Bio.KDTree.KDTree-module.html#_test
Bio.KEGG	Bio.KEGG-module.html
Bio.KEGG._wrap_kegg	Bio.KEGG-module.html#_wrap_kegg
Bio.KEGG.__package__	Bio.KEGG-module.html#__package__
Bio.KEGG._default_wrap	Bio.KEGG-module.html#_default_wrap
Bio.KEGG.KEGG_LINE_LENGTH	Bio.KEGG-module.html#KEGG_LINE_LENGTH
Bio.KEGG.KEGG_DATA_LENGTH	Bio.KEGG-module.html#KEGG_DATA_LENGTH
Bio.KEGG._write_kegg	Bio.KEGG-module.html#_write_kegg
Bio.KEGG.KEGG_ITEM_LENGTH	Bio.KEGG-module.html#KEGG_ITEM_LENGTH
Bio.KEGG.Compound	Bio.KEGG.Compound-module.html
Bio.KEGG.Compound.name_wrap	Bio.KEGG.Compound-module.html#name_wrap
Bio.KEGG.Compound._test	Bio.KEGG.Compound-module.html#_test
Bio.KEGG.Compound._write_kegg	Bio.KEGG-module.html#_write_kegg
Bio.KEGG.Compound.__package__	Bio.KEGG.Compound-module.html#__package__
Bio.KEGG.Compound.parse	Bio.KEGG.Compound-module.html#parse
Bio.KEGG.Compound.id_wrap	Bio.KEGG.Compound-module.html#id_wrap
Bio.KEGG.Compound._wrap_kegg	Bio.KEGG-module.html#_wrap_kegg
Bio.KEGG.Compound.struct_wrap	Bio.KEGG.Compound-module.html#struct_wrap
Bio.KEGG.Enzyme	Bio.KEGG.Enzyme-module.html
Bio.KEGG.Enzyme.rxn_wrap	Bio.KEGG.Enzyme-module.html#rxn_wrap
Bio.KEGG.Enzyme.name_wrap	Bio.KEGG.Enzyme-module.html#name_wrap
Bio.KEGG.Enzyme._test	Bio.KEGG.Enzyme-module.html#_test
Bio.KEGG.Enzyme._write_kegg	Bio.KEGG-module.html#_write_kegg
Bio.KEGG.Enzyme.__package__	Bio.KEGG.Enzyme-module.html#__package__
Bio.KEGG.Enzyme.parse	Bio.KEGG.Enzyme-module.html#parse
Bio.KEGG.Enzyme.id_wrap	Bio.KEGG.Enzyme-module.html#id_wrap
Bio.KEGG.Enzyme._wrap_kegg	Bio.KEGG-module.html#_wrap_kegg
Bio.KEGG.Enzyme.struct_wrap	Bio.KEGG.Enzyme-module.html#struct_wrap
Bio.KEGG.Map	Bio.KEGG.Map-module.html
Bio.KEGG.Map.parse	Bio.KEGG.Map-module.html#parse
Bio.KEGG.Map.__package__	Bio.KEGG.Map-module.html#__package__
Bio.LogisticRegression	Bio.LogisticRegression-module.html
Bio.LogisticRegression.calculate	Bio.LogisticRegression-module.html#calculate
Bio.LogisticRegression.__package__	Bio.LogisticRegression-module.html#__package__
Bio.LogisticRegression.train	Bio.LogisticRegression-module.html#train
Bio.LogisticRegression.classify	Bio.LogisticRegression-module.html#classify
Bio.MEME	Bio.MEME-module.html
Bio.MEME.__warningregistry__	Bio.MEME-module.html#__warningregistry__
Bio.MEME.__package__	Bio.MEME-module.html#__package__
Bio.MEME.Motif	Bio.MEME.Motif-module.html
Bio.MEME.Motif.__package__	Bio.MEME.Motif-module.html#__package__
Bio.MEME.Motif._corr	Bio.MEME.Motif-module.html#_corr
Bio.MEME.Parser	Bio.MEME.Parser-module.html
Bio.MEME.Parser.__package__	Bio.MEME.Parser-module.html#__package__
Bio.MEME.Parser.StringTypes	Bio.MEME.Parser-module.html#StringTypes
Bio.MEME.Parser.xml_support	Bio.MEME.Parser-module.html#xml_support
Bio.MarkovModel	Bio.MarkovModel-module.html
Bio.MarkovModel.load	Bio.MarkovModel-module.html#load
Bio.MarkovModel._readline_and_check_start	Bio.MarkovModel-module.html#_readline_and_check_start
Bio.MarkovModel.find_states	Bio.MarkovModel-module.html#find_states
Bio.MarkovModel._uniform_norm	Bio.MarkovModel-module.html#_uniform_norm
Bio.MarkovModel._copy_and_check	Bio.MarkovModel-module.html#_copy_and_check
Bio.MarkovModel._logvecadd	Bio.MarkovModel-module.html#_logvecadd
Bio.MarkovModel.train_visible	Bio.MarkovModel-module.html#train_visible
Bio.MarkovModel._baum_welch	Bio.MarkovModel-module.html#_baum_welch
Bio.MarkovModel.this_module	Bio.MarkovModel-module.html#this_module
Bio.MarkovModel._backward	Bio.MarkovModel-module.html#_backward
Bio.MarkovModel.train_bw	Bio.MarkovModel-module.html#train_bw
Bio.MarkovModel.LOG0	Bio.MarkovModel-module.html#LOG0
Bio.MarkovModel._exp_logsum	Bio.MarkovModel-module.html#_exp_logsum
Bio.MarkovModel._logsum	Bio.MarkovModel-module.html#_logsum
Bio.MarkovModel.__package__	Bio.MarkovModel-module.html#__package__
Bio.MarkovModel.save	Bio.MarkovModel-module.html#save
Bio.MarkovModel._baum_welch_one	Bio.MarkovModel-module.html#_baum_welch_one
Bio.MarkovModel.itemindex	Bio.MarkovModel-module.html#itemindex
Bio.MarkovModel._logadd	Bio.MarkovModel-module.html#_logadd
Bio.MarkovModel._argmaxes	Bio.MarkovModel-module.html#_argmaxes
Bio.MarkovModel._forward	Bio.MarkovModel-module.html#_forward
Bio.MarkovModel.VERY_SMALL_NUMBER	Bio.MarkovModel-module.html#VERY_SMALL_NUMBER
Bio.MarkovModel._viterbi	Bio.MarkovModel-module.html#_viterbi
Bio.MarkovModel._random_norm	Bio.MarkovModel-module.html#_random_norm
Bio.MarkovModel._normalize	Bio.MarkovModel-module.html#_normalize
Bio.MarkovModel.x	Bio.MarkovModel-module.html#x
Bio.MarkovModel.MAX_ITERATIONS	Bio.MarkovModel-module.html#MAX_ITERATIONS
Bio.MarkovModel._mle	Bio.MarkovModel-module.html#_mle
Bio.MaxEntropy	Bio.MaxEntropy-module.html
Bio.MaxEntropy._train_iis	Bio.MaxEntropy-module.html#_train_iis
Bio.MaxEntropy.MAX_NEWTON_ITERATIONS	Bio.MaxEntropy-module.html#MAX_NEWTON_ITERATIONS
Bio.MaxEntropy.calculate	Bio.MaxEntropy-module.html#calculate
Bio.MaxEntropy._calc_f_sharp	Bio.MaxEntropy-module.html#_calc_f_sharp
Bio.MaxEntropy.MAX_IIS_ITERATIONS	Bio.MaxEntropy-module.html#MAX_IIS_ITERATIONS
Bio.MaxEntropy._calc_p_class_given_x	Bio.MaxEntropy-module.html#_calc_p_class_given_x
Bio.MaxEntropy.__package__	Bio.MaxEntropy-module.html#__package__
Bio.MaxEntropy.NEWTON_CONVERGE	Bio.MaxEntropy-module.html#NEWTON_CONVERGE
Bio.MaxEntropy.train	Bio.MaxEntropy-module.html#train
Bio.MaxEntropy._eval_feature_fn	Bio.MaxEntropy-module.html#_eval_feature_fn
Bio.MaxEntropy._calc_model_expects	Bio.MaxEntropy-module.html#_calc_model_expects
Bio.MaxEntropy.IIS_CONVERGE	Bio.MaxEntropy-module.html#IIS_CONVERGE
Bio.MaxEntropy._calc_empirical_expects	Bio.MaxEntropy-module.html#_calc_empirical_expects
Bio.MaxEntropy.classify	Bio.MaxEntropy-module.html#classify
Bio.MaxEntropy._iis_solve_delta	Bio.MaxEntropy-module.html#_iis_solve_delta
Bio.Medline	Bio.Medline-module.html
Bio.Medline.parse	Bio.Medline-module.html#parse
Bio.Medline.read	Bio.Medline-module.html#read
Bio.Medline.__package__	Bio.Medline-module.html#__package__
Bio.Motif	Bio.Motif-module.html
Bio.Motif._readers	Bio.Motif-module.html#_readers
Bio.Motif._from_pfm	Bio.Motif-module.html#_from_pfm
Bio.Motif._parsers	Bio.Motif-module.html#_parsers
Bio.Motif._from_sites	Bio.Motif-module.html#_from_sites
Bio.Motif.__package__	Bio.Motif-module.html#__package__
Bio.Motif.parse	Bio.Motif-module.html#parse
Bio.Motif.read	Bio.Motif-module.html#read
Bio.Motif._test	Bio.Motif-module.html#_test
Bio.Motif.Applications	Bio.Motif.Applications-module.html
Bio.Motif.Applications.__package__	Bio.Motif.Applications-module.html#__package__
Bio.Motif.Applications._AlignAce	Bio.Motif.Applications._AlignAce-module.html
Bio.Motif.Applications._AlignAce.__package__	Bio.Motif.Applications._AlignAce-module.html#__package__
Bio.Motif.Parsers	Bio.Motif.Parsers-module.html
Bio.Motif.Parsers.__package__	Bio.Motif.Parsers-module.html#__package__
Bio.Motif.Parsers.AlignAce	Bio.Motif.Parsers.AlignAce-module.html
Bio.Motif.Parsers.AlignAce.__package__	Bio.Motif.Parsers.AlignAce-module.html#__package__
Bio.Motif.Parsers.AlignAce.StringTypes	Bio.Motif.Parsers.AlignAce-module.html#StringTypes
Bio.Motif.Parsers.AlignAce.xml_support	Bio.Motif.Parsers.AlignAce-module.html#xml_support
Bio.Motif.Parsers.MEME	Bio.Motif.Parsers.MEME-module.html
Bio.Motif.Parsers.MEME.__package__	Bio.Motif.Parsers.MEME-module.html#__package__
Bio.Motif.Parsers.MEME.StringTypes	Bio.Motif.Parsers.MEME-module.html#StringTypes
Bio.Motif.Parsers.MEME.xml_support	Bio.Motif.Parsers.MEME-module.html#xml_support
Bio.Motif.Thresholds	Bio.Motif.Thresholds-module.html
Bio.Motif.Thresholds.__package__	Bio.Motif.Thresholds-module.html#__package__
Bio.Motif._Motif	Bio.Motif._Motif-module.html
Bio.Motif._Motif.__package__	Bio.Motif._Motif-module.html#__package__
Bio.NMR	Bio.NMR-module.html
Bio.NMR.__package__	Bio.NMR-module.html#__package__
Bio.NMR.NOEtools	Bio.NMR.NOEtools-module.html
Bio.NMR.NOEtools._col_ave	Bio.NMR.NOEtools-module.html#_col_ave
Bio.NMR.NOEtools._data_map	Bio.NMR.NOEtools-module.html#_data_map
Bio.NMR.NOEtools.predictNOE	Bio.NMR.NOEtools-module.html#predictNOE
Bio.NMR.NOEtools.__package__	Bio.NMR.NOEtools-module.html#__package__
Bio.NMR.xpktools	Bio.NMR.xpktools-module.html
Bio.NMR.xpktools._find_start_entry	Bio.NMR.xpktools-module.html#_find_start_entry
Bio.NMR.xpktools._try_open_write	Bio.NMR.xpktools-module.html#_try_open_write
Bio.NMR.xpktools.__package__	Bio.NMR.xpktools-module.html#__package__
Bio.NMR.xpktools._sort_keys	Bio.NMR.xpktools-module.html#_sort_keys
Bio.NMR.xpktools._read_dicts	Bio.NMR.xpktools-module.html#_read_dicts
Bio.NMR.xpktools._try_open_read	Bio.NMR.xpktools-module.html#_try_open_read
Bio.NMR.xpktools.replace_entry	Bio.NMR.xpktools-module.html#replace_entry
Bio.NMR.xpktools.HEADERLEN	Bio.NMR.xpktools-module.html#HEADERLEN
Bio.NMR.xpktools.data_table	Bio.NMR.xpktools-module.html#data_table
Bio.NaiveBayes	Bio.NaiveBayes-module.html
Bio.NaiveBayes.calculate	Bio.NaiveBayes-module.html#calculate
Bio.NaiveBayes.__package__	Bio.NaiveBayes-module.html#__package__
Bio.NaiveBayes._contents	Bio.NaiveBayes-module.html#_contents
Bio.NaiveBayes.train	Bio.NaiveBayes-module.html#train
Bio.NaiveBayes.classify	Bio.NaiveBayes-module.html#classify
Bio.Ndb	Bio.Ndb-module.html
Bio.Ndb.handle	Bio.Ndb-module.html#handle
Bio.Ndb.undo_handle	Bio.Ndb-module.html#undo_handle
Bio.Ndb.ndb_parser	Bio.Ndb-module.html#ndb_parser
Bio.Ndb.__warningregistry__	Bio.Ndb-module.html#__warningregistry__
Bio.Ndb.__package__	Bio.Ndb-module.html#__package__
Bio.Ndb.xml_support	Bio.Ndb-module.html#xml_support
Bio.Ndb.record	Bio.Ndb-module.html#record
Bio.Ndb._parse_constants	Bio.Ndb-module.html#_parse_constants
Bio.NetCatch	Bio.NetCatch-module.html
Bio.NetCatch.__warningregistry__	Bio.NetCatch-module.html#__warningregistry__
Bio.NetCatch.__package__	Bio.NetCatch-module.html#__package__
Bio.NetCatch.is_absolute_url	Bio.NetCatch-module.html#is_absolute_url
Bio.NeuralNetwork	Bio.NeuralNetwork-module.html
Bio.NeuralNetwork.__package__	Bio.NeuralNetwork-module.html#__package__
Bio.NeuralNetwork.BackPropagation	Bio.NeuralNetwork.BackPropagation-module.html
Bio.NeuralNetwork.BackPropagation.__package__	Bio.NeuralNetwork.BackPropagation-module.html#__package__
Bio.NeuralNetwork.BackPropagation.Layer	Bio.NeuralNetwork.BackPropagation.Layer-module.html
Bio.NeuralNetwork.BackPropagation.Layer.__package__	Bio.NeuralNetwork.BackPropagation.Layer-module.html#__package__
Bio.NeuralNetwork.BackPropagation.Layer.logistic_function	Bio.NeuralNetwork.BackPropagation.Layer-module.html#logistic_function
Bio.NeuralNetwork.BackPropagation.Network	Bio.NeuralNetwork.BackPropagation.Network-module.html
Bio.NeuralNetwork.BackPropagation.Network.__package__	Bio.NeuralNetwork.BackPropagation.Network-module.html#__package__
Bio.NeuralNetwork.Gene	Bio.NeuralNetwork.Gene-module.html
Bio.NeuralNetwork.Gene.__package__	Bio.NeuralNetwork.Gene-module.html#__package__
Bio.NeuralNetwork.Gene.Motif	Bio.NeuralNetwork.Gene.Motif-module.html
Bio.NeuralNetwork.Gene.Motif.__package__	Bio.NeuralNetwork.Gene.Motif-module.html#__package__
Bio.NeuralNetwork.Gene.Pattern	Bio.NeuralNetwork.Gene.Pattern-module.html
Bio.NeuralNetwork.Gene.Pattern.__package__	Bio.NeuralNetwork.Gene.Pattern-module.html#__package__
Bio.NeuralNetwork.Gene.Schema	Bio.NeuralNetwork.Gene.Schema-module.html
Bio.NeuralNetwork.Gene.Schema.__package__	Bio.NeuralNetwork.Gene.Schema-module.html#__package__
Bio.NeuralNetwork.Gene.Schema.matches_schema	Bio.NeuralNetwork.Gene.Schema-module.html#matches_schema
Bio.NeuralNetwork.Gene.Signature	Bio.NeuralNetwork.Gene.Signature-module.html
Bio.NeuralNetwork.Gene.Signature.__package__	Bio.NeuralNetwork.Gene.Signature-module.html#__package__
Bio.NeuralNetwork.StopTraining	Bio.NeuralNetwork.StopTraining-module.html
Bio.NeuralNetwork.StopTraining.__package__	Bio.NeuralNetwork.StopTraining-module.html#__package__
Bio.NeuralNetwork.Training	Bio.NeuralNetwork.Training-module.html
Bio.NeuralNetwork.Training.__package__	Bio.NeuralNetwork.Training-module.html#__package__
Bio.Nexus	Bio.Nexus-module.html
Bio.Nexus.__package__	Bio.Nexus-module.html#__package__
Bio.Nexus.Nexus	Bio.Nexus.Nexus-module.html
Bio.Nexus.Nexus.KNOWN_NEXUS_BLOCKS	Bio.Nexus.Nexus-module.html#KNOWN_NEXUS_BLOCKS
Bio.Nexus.Nexus._sort_keys_by_values	Bio.Nexus.Nexus-module.html#_sort_keys_by_values
Bio.Nexus.Nexus.MRBAYESSAFE	Bio.Nexus.Nexus-module.html#MRBAYESSAFE
Bio.Nexus.Nexus._adjust_lines	Bio.Nexus.Nexus-module.html#_adjust_lines
Bio.Nexus.Nexus.get_start_end	Bio.Nexus.Nexus-module.html#get_start_end
Bio.Nexus.Nexus._make_unique	Bio.Nexus.Nexus-module.html#_make_unique
Bio.Nexus.Nexus.DEFAULTNEXUS	Bio.Nexus.Nexus-module.html#DEFAULTNEXUS
Bio.Nexus.Nexus.SPECIALCOMMENTS	Bio.Nexus.Nexus-module.html#SPECIALCOMMENTS
Bio.Nexus.Nexus.SPECIAL_COMMANDS	Bio.Nexus.Nexus-module.html#SPECIAL_COMMANDS
Bio.Nexus.Nexus._compact4nexus	Bio.Nexus.Nexus-module.html#_compact4nexus
Bio.Nexus.Nexus.__package__	Bio.Nexus.Nexus-module.html#__package__
Bio.Nexus.Nexus.combine	Bio.Nexus.Nexus-module.html#combine
Bio.Nexus.Nexus.CODONPOSITIONS	Bio.Nexus.Nexus-module.html#CODONPOSITIONS
Bio.Nexus.Nexus._kill_comments_and_break_lines	Bio.Nexus.Nexus-module.html#_kill_comments_and_break_lines
Bio.Nexus.Nexus.C	Bio.Nexus.Nexus-module.html#C
Bio.Nexus.Nexus.PUNCTUATION	Bio.Nexus.Nexus-module.html#PUNCTUATION
Bio.Nexus.Nexus.TAXSET	Bio.Nexus.Nexus-module.html#TAXSET
Bio.Nexus.Nexus.safename	Bio.Nexus.Nexus-module.html#safename
Bio.Nexus.Nexus.quotestrip	Bio.Nexus.Nexus-module.html#quotestrip
Bio.Nexus.Nexus._replace_parenthesized_ambigs	Bio.Nexus.Nexus-module.html#_replace_parenthesized_ambigs
Bio.Nexus.Nexus.CHARSET	Bio.Nexus.Nexus-module.html#CHARSET
Bio.Nexus.Nexus._unique_label	Bio.Nexus.Nexus-module.html#_unique_label
Bio.Nexus.Nexus.WHITESPACE	Bio.Nexus.Nexus-module.html#WHITESPACE
Bio.Nexus.Nexus.INTERLEAVE	Bio.Nexus.Nexus-module.html#INTERLEAVE
Bio.Nexus.Nexus._seqmatrix2strmatrix	Bio.Nexus.Nexus-module.html#_seqmatrix2strmatrix
Bio.Nexus.Nodes	Bio.Nexus.Nodes-module.html
Bio.Nexus.Nodes.__package__	Bio.Nexus.Nodes-module.html#__package__
Bio.Nexus.Trees	Bio.Nexus.Trees-module.html
Bio.Nexus.Trees.PRECISION_BRANCHLENGTH	Bio.Nexus.Trees-module.html#PRECISION_BRANCHLENGTH
Bio.Nexus.Trees.NODECOMMENT_END	Bio.Nexus.Trees-module.html#NODECOMMENT_END
Bio.Nexus.Trees.__package__	Bio.Nexus.Trees-module.html#__package__
Bio.Nexus.Trees.consensus	Bio.Nexus.Trees-module.html#consensus
Bio.Nexus.Trees.NODECOMMENT_START	Bio.Nexus.Trees-module.html#NODECOMMENT_START
Bio.Nexus.Trees.PRECISION_SUPPORT	Bio.Nexus.Trees-module.html#PRECISION_SUPPORT
Bio.PDB	Bio.PDB-module.html
Bio.PDB.extract	Bio.PDB.Dice-module.html#extract
Bio.PDB.__package__	Bio.PDB-module.html#__package__
Bio.PDB.is_aa	Bio.PDB.Polypeptide-module.html#is_aa
Bio.PDB.__doc__	Bio.PDB-module.html#__doc__
Bio.PDB.AbstractPropertyMap	Bio.PDB.AbstractPropertyMap-module.html
Bio.PDB.AbstractPropertyMap.__package__	Bio.PDB.AbstractPropertyMap-module.html#__package__
Bio.PDB.AbstractPropertyMap.__doc__	Bio.PDB.AbstractPropertyMap-module.html#__doc__
Bio.PDB.Atom	Bio.PDB.Atom-module.html
Bio.PDB.Atom.__package__	Bio.PDB.Atom-module.html#__package__
Bio.PDB.Atom.__doc__	Bio.PDB.Atom-module.html#__doc__
Bio.PDB.Chain	Bio.PDB.Chain-module.html
Bio.PDB.Chain.__package__	Bio.PDB.Chain-module.html#__package__
Bio.PDB.Chain.__doc__	Bio.PDB.Chain-module.html#__doc__
Bio.PDB.DSSP'	Bio.PDB.DSSP%27-module.html
Bio.PDB.DSSP'.to_one_letter_code	Bio.PDB.DSSP%27-module.html#to_one_letter_code
Bio.PDB.DSSP'.standard_aa_names	Bio.PDB.DSSP%27-module.html#standard_aa_names
Bio.PDB.DSSP'._dssp_cys	Bio.PDB.DSSP%27-module.html#_dssp_cys
Bio.PDB.DSSP'.make_dssp_dict	Bio.PDB.DSSP%27-module.html#make_dssp_dict
Bio.PDB.DSSP'.__package__	Bio.PDB.DSSP%27-module.html#__package__
Bio.PDB.DSSP'.dssp_dict_from_pdb_file	Bio.PDB.DSSP%27-module.html#dssp_dict_from_pdb_file
Bio.PDB.DSSP'.ss_to_index	Bio.PDB.DSSP%27-module.html#ss_to_index
Bio.PDB.DSSP'.MAX_ACC	Bio.PDB.DSSP%27-module.html#MAX_ACC
Bio.PDB.Dice	Bio.PDB.Dice-module.html
Bio.PDB.Dice._hydrogen	Bio.PDB.Dice-module.html#_hydrogen
Bio.PDB.Dice.__package__	Bio.PDB.Dice-module.html#__package__
Bio.PDB.Dice.extract	Bio.PDB.Dice-module.html#extract
Bio.PDB.Entity	Bio.PDB.Entity-module.html
Bio.PDB.Entity.__package__	Bio.PDB.Entity-module.html#__package__
Bio.PDB.Entity.__doc__	Bio.PDB.Entity-module.html#__doc__
Bio.PDB.FragmentMapper'	Bio.PDB.FragmentMapper%27-module.html
Bio.PDB.FragmentMapper'.to_one_letter_code	Bio.PDB.FragmentMapper%27-module.html#to_one_letter_code
Bio.PDB.FragmentMapper'._make_fragment_list	Bio.PDB.FragmentMapper%27-module.html#_make_fragment_list
Bio.PDB.FragmentMapper'.standard_aa_names	Bio.PDB.FragmentMapper%27-module.html#standard_aa_names
Bio.PDB.FragmentMapper'._map_fragment_list	Bio.PDB.FragmentMapper%27-module.html#_map_fragment_list
Bio.PDB.FragmentMapper'._read_fragments	Bio.PDB.FragmentMapper%27-module.html#_read_fragments
Bio.PDB.FragmentMapper'.__package__	Bio.PDB.FragmentMapper%27-module.html#__package__
Bio.PDB.FragmentMapper'._FRAGMENT_FILE	Bio.PDB.FragmentMapper%27-module.html#_FRAGMENT_FILE
Bio.PDB.HSExposure	Bio.PDB.HSExposure-module.html
Bio.PDB.HSExposure.to_one_letter_code	Bio.PDB.HSExposure-module.html#to_one_letter_code
Bio.PDB.HSExposure.standard_aa_names	Bio.PDB.HSExposure-module.html#standard_aa_names
Bio.PDB.HSExposure.__package__	Bio.PDB.HSExposure-module.html#__package__
Bio.PDB.HSExposure.__doc__	Bio.PDB.HSExposure-module.html#__doc__
Bio.PDB.MMCIF2Dict	Bio.PDB.MMCIF2Dict-module.html
Bio.PDB.MMCIF2Dict.__doc__	Bio.PDB.MMCIF2Dict-module.html#__doc__
Bio.PDB.MMCIFParser	Bio.PDB.MMCIFParser-module.html
Bio.PDB.MMCIFParser.__doc__	Bio.PDB.MMCIFParser-module.html#__doc__
Bio.PDB.Model	Bio.PDB.Model-module.html
Bio.PDB.Model.__package__	Bio.PDB.Model-module.html#__package__
Bio.PDB.Model.__doc__	Bio.PDB.Model-module.html#__doc__
Bio.PDB.NACCESS	Bio.PDB.NACCESS-module.html
Bio.PDB.NACCESS.process_rsa_data	Bio.PDB.NACCESS-module.html#process_rsa_data
Bio.PDB.NACCESS.__package__	Bio.PDB.NACCESS-module.html#__package__
Bio.PDB.NACCESS.process_asa_data	Bio.PDB.NACCESS-module.html#process_asa_data
Bio.PDB.NACCESS.run_naccess	Bio.PDB.NACCESS-module.html#run_naccess
Bio.PDB.NACCESS.__doc__	Bio.PDB.NACCESS-module.html#__doc__
Bio.PDB.NeighborSearch	Bio.PDB.NeighborSearch-module.html
Bio.PDB.NeighborSearch.__doc__	Bio.PDB.NeighborSearch-module.html#__doc__
Bio.PDB.PDBExceptions	Bio.PDB.PDBExceptions-module.html
Bio.PDB.PDBExceptions.__doc__	Bio.PDB.PDBExceptions-module.html#__doc__
Bio.PDB.PDBExceptions.__package__	Bio.PDB.PDBExceptions-module.html#__package__
Bio.PDB.PDBIO'	Bio.PDB.PDBIO%27-module.html
Bio.PDB.PDBIO'._ATOM_FORMAT_STRING	Bio.PDB.PDBIO%27-module.html#_ATOM_FORMAT_STRING
Bio.PDB.PDBIO'.__package__	Bio.PDB.PDBIO%27-module.html#__package__
Bio.PDB.PDBList'	Bio.PDB.PDBList%27-module.html
Bio.PDB.PDBList'.__package__	Bio.PDB.PDBList%27-module.html#__package__
Bio.PDB.PDBParser'	Bio.PDB.PDBParser%27-module.html
Bio.PDB.PDBParser'.__package__	Bio.PDB.PDBParser%27-module.html#__package__
Bio.PDB.PSEA	Bio.PDB.PSEA-module.html
Bio.PDB.PSEA.run_psea	Bio.PDB.PSEA-module.html#run_psea
Bio.PDB.PSEA.psea	Bio.PDB.PSEA-module.html#psea
Bio.PDB.PSEA.annotate	Bio.PDB.PSEA-module.html#annotate
Bio.PDB.PSEA.standard_aa_names	Bio.PDB.PSEA-module.html#standard_aa_names
Bio.PDB.PSEA.psea2HEC	Bio.PDB.PSEA-module.html#psea2HEC
Bio.PDB.PSEA.__package__	Bio.PDB.PSEA-module.html#__package__
Bio.PDB.PSEA.to_one_letter_code	Bio.PDB.PSEA-module.html#to_one_letter_code
Bio.PDB.Polypeptide	Bio.PDB.Polypeptide-module.html
Bio.PDB.Polypeptide.standard_aa_names	Bio.PDB.Polypeptide-module.html#standard_aa_names
Bio.PDB.Polypeptide.index_to_three	Bio.PDB.Polypeptide-module.html#index_to_three
Bio.PDB.Polypeptide.three_to_index	Bio.PDB.Polypeptide-module.html#three_to_index
Bio.PDB.Polypeptide.__package__	Bio.PDB.Polypeptide-module.html#__package__
Bio.PDB.Polypeptide.aa1	Bio.PDB.Polypeptide-module.html#aa1
Bio.PDB.Polypeptide.aa3	Bio.PDB.Polypeptide-module.html#aa3
Bio.PDB.Polypeptide.is_aa	Bio.PDB.Polypeptide-module.html#is_aa
Bio.PDB.Polypeptide.__doc__	Bio.PDB.Polypeptide-module.html#__doc__
Bio.PDB.Polypeptide.d1_to_index	Bio.PDB.Polypeptide-module.html#d1_to_index
Bio.PDB.Polypeptide.one_to_three	Bio.PDB.Polypeptide-module.html#one_to_three
Bio.PDB.Polypeptide.index_to_one	Bio.PDB.Polypeptide-module.html#index_to_one
Bio.PDB.Polypeptide.one_to_index	Bio.PDB.Polypeptide-module.html#one_to_index
Bio.PDB.Polypeptide.three_to_one	Bio.PDB.Polypeptide-module.html#three_to_one
Bio.PDB.Polypeptide.i	Bio.PDB.Polypeptide-module.html#i
Bio.PDB.Polypeptide.dindex_to_3	Bio.PDB.Polypeptide-module.html#dindex_to_3
Bio.PDB.Polypeptide.dindex_to_1	Bio.PDB.Polypeptide-module.html#dindex_to_1
Bio.PDB.Polypeptide.d3_to_index	Bio.PDB.Polypeptide-module.html#d3_to_index
Bio.PDB.Polypeptide.n1	Bio.PDB.Polypeptide-module.html#n1
Bio.PDB.Polypeptide.n3	Bio.PDB.Polypeptide-module.html#n3
Bio.PDB.Residue	Bio.PDB.Residue-module.html
Bio.PDB.Residue.__package__	Bio.PDB.Residue-module.html#__package__
Bio.PDB.Residue.__doc__	Bio.PDB.Residue-module.html#__doc__
Bio.PDB.Residue._atom_name_dict	Bio.PDB.Residue-module.html#_atom_name_dict
Bio.PDB.ResidueDepth'	Bio.PDB.ResidueDepth%27-module.html
Bio.PDB.ResidueDepth'.to_one_letter_code	Bio.PDB.ResidueDepth%27-module.html#to_one_letter_code
Bio.PDB.ResidueDepth'.residue_depth	Bio.PDB.ResidueDepth%27-module.html#residue_depth
Bio.PDB.ResidueDepth'.standard_aa_names	Bio.PDB.ResidueDepth%27-module.html#standard_aa_names
Bio.PDB.ResidueDepth'.ca_depth	Bio.PDB.ResidueDepth%27-module.html#ca_depth
Bio.PDB.ResidueDepth'.__package__	Bio.PDB.ResidueDepth%27-module.html#__package__
Bio.PDB.ResidueDepth'.min_dist	Bio.PDB.ResidueDepth%27-module.html#min_dist
Bio.PDB.ResidueDepth'.get_surface	Bio.PDB.ResidueDepth%27-module.html#get_surface
Bio.PDB.ResidueDepth'._read_vertex_array	Bio.PDB.ResidueDepth%27-module.html#_read_vertex_array
Bio.PDB.Selection	Bio.PDB.Selection-module.html
Bio.PDB.Selection.uniqueify	Bio.PDB.Selection-module.html#uniqueify
Bio.PDB.Selection.unfold_entities	Bio.PDB.Selection-module.html#unfold_entities
Bio.PDB.Selection.entity_levels	Bio.PDB.Selection-module.html#entity_levels
Bio.PDB.Selection.__package__	Bio.PDB.Selection-module.html#__package__
Bio.PDB.Selection.__doc__	Bio.PDB.Selection-module.html#__doc__
Bio.PDB.Selection.get_unique_parents	Bio.PDB.Selection-module.html#get_unique_parents
Bio.PDB.Structure	Bio.PDB.Structure-module.html
Bio.PDB.Structure.__package__	Bio.PDB.Structure-module.html#__package__
Bio.PDB.Structure.__doc__	Bio.PDB.Structure-module.html#__doc__
Bio.PDB.StructureAlignment'	Bio.PDB.StructureAlignment%27-module.html
Bio.PDB.StructureAlignment'.to_one_letter_code	Bio.PDB.StructureAlignment%27-module.html#to_one_letter_code
Bio.PDB.StructureAlignment'.standard_aa_names	Bio.PDB.StructureAlignment%27-module.html#standard_aa_names
Bio.PDB.StructureAlignment'.__package__	Bio.PDB.StructureAlignment%27-module.html#__package__
Bio.PDB.StructureBuilder	Bio.PDB.StructureBuilder-module.html
Bio.PDB.StructureBuilder.__package__	Bio.PDB.StructureBuilder-module.html#__package__
Bio.PDB.StructureBuilder.__doc__	Bio.PDB.StructureBuilder-module.html#__doc__
Bio.PDB.Superimposer'	Bio.PDB.Superimposer%27-module.html
Bio.PDB.Superimposer'.__package__	Bio.PDB.Superimposer%27-module.html#__package__
Bio.PDB.Vector'	Bio.PDB.Vector%27-module.html
Bio.PDB.Vector'.refmat	Bio.PDB.Vector%27-module.html#refmat
Bio.PDB.Vector'.vector_to_axis	Bio.PDB.Vector%27-module.html#vector_to_axis
Bio.PDB.Vector'.calc_angle	Bio.PDB.Vector%27-module.html#calc_angle
Bio.PDB.Vector'.rotmat	Bio.PDB.Vector%27-module.html#rotmat
Bio.PDB.Vector'.rotaxis	Bio.PDB.Vector%27-module.html#rotaxis
Bio.PDB.Vector'.rotaxis2m	Bio.PDB.Vector%27-module.html#rotaxis2m
Bio.PDB.Vector'.__package__	Bio.PDB.Vector%27-module.html#__package__
Bio.PDB.Vector'.calc_dihedral	Bio.PDB.Vector%27-module.html#calc_dihedral
Bio.PDB.Vector'.m2rotaxis	Bio.PDB.Vector%27-module.html#m2rotaxis
Bio.PDB.mmCIF	Bio.PDB.mmCIF-module.html
Bio.PDB.mmCIF.__package__	Bio.PDB.mmCIF-module.html#__package__
Bio.PDB.parse_pdb_header'	Bio.PDB.parse_pdb_header%27-module.html
Bio.PDB.parse_pdb_header'._get_journal	Bio.PDB.parse_pdb_header%27-module.html#_get_journal
Bio.PDB.parse_pdb_header'.parse_pdb_header	Bio.PDB.parse_pdb_header%27-module.html#parse_pdb_header
Bio.PDB.parse_pdb_header'._format_date	Bio.PDB.parse_pdb_header%27-module.html#_format_date
Bio.PDB.parse_pdb_header'._get_references	Bio.PDB.parse_pdb_header%27-module.html#_get_references
Bio.PDB.parse_pdb_header'._chop_end_misc	Bio.PDB.parse_pdb_header%27-module.html#_chop_end_misc
Bio.PDB.parse_pdb_header'.__package__	Bio.PDB.parse_pdb_header%27-module.html#__package__
Bio.PDB.parse_pdb_header'._chop_end_codes	Bio.PDB.parse_pdb_header%27-module.html#_chop_end_codes
Bio.PDB.parse_pdb_header'._nice_case	Bio.PDB.parse_pdb_header%27-module.html#_nice_case
Bio.PDB.parse_pdb_header'._parse_pdb_header_list	Bio.PDB.parse_pdb_header%27-module.html#_parse_pdb_header_list
Bio.ParserSupport	Bio.ParserSupport-module.html
Bio.ParserSupport._fails_conditions	Bio.ParserSupport-module.html#_fails_conditions
Bio.ParserSupport.is_blank_line	Bio.ParserSupport-module.html#is_blank_line
Bio.ParserSupport.__package__	Bio.ParserSupport-module.html#__package__
Bio.ParserSupport.safe_peekline	Bio.ParserSupport-module.html#safe_peekline
Bio.ParserSupport.attempt_read_and_call	Bio.ParserSupport-module.html#attempt_read_and_call
Bio.ParserSupport.read_and_call	Bio.ParserSupport-module.html#read_and_call
Bio.ParserSupport.safe_readline	Bio.ParserSupport-module.html#safe_readline
Bio.ParserSupport.read_and_call_while	Bio.ParserSupport-module.html#read_and_call_while
Bio.ParserSupport.xml_support	Bio.ParserSupport-module.html#xml_support
Bio.ParserSupport.read_and_call_until	Bio.ParserSupport-module.html#read_and_call_until
Bio.Parsers	Bio.Parsers-module.html
Bio.Parsers.__package__	Bio.Parsers-module.html#__package__
Bio.Parsers.spark	Bio.Parsers.spark-module.html
Bio.Parsers.spark._namelist	Bio.Parsers.spark-module.html#_namelist
Bio.Parsers.spark.__package__	Bio.Parsers.spark-module.html#__package__
Bio.Parsers.spark._dump	Bio.Parsers.spark-module.html#_dump
Bio.Pathway	Bio.Pathway-module.html
Bio.Pathway.__package__	Bio.Pathway-module.html#__package__
Bio.Pathway.Rep	Bio.Pathway.Rep-module.html
Bio.Pathway.Rep.__package__	Bio.Pathway.Rep-module.html#__package__
Bio.Pathway.Rep.Graph	Bio.Pathway.Rep.Graph-module.html
Bio.Pathway.Rep.Graph.__package__	Bio.Pathway.Rep.Graph-module.html#__package__
Bio.Pathway.Rep.HashSet	Bio.Pathway.Rep.HashSet-module.html
Bio.Pathway.Rep.HashSet.__package__	Bio.Pathway.Rep.HashSet-module.html#__package__
Bio.Pathway.Rep.MultiGraph	Bio.Pathway.Rep.MultiGraph-module.html
Bio.Pathway.Rep.MultiGraph.df_search	Bio.Pathway.Rep.MultiGraph-module.html#df_search
Bio.Pathway.Rep.MultiGraph.bf_search	Bio.Pathway.Rep.MultiGraph-module.html#bf_search
Bio.Pathway.Rep.MultiGraph.__package__	Bio.Pathway.Rep.MultiGraph-module.html#__package__
Bio.PopGen	Bio.PopGen-module.html
Bio.PopGen.__package__	Bio.PopGen-module.html#__package__
Bio.PopGen.Async	Bio.PopGen.Async-module.html
Bio.PopGen.Async.__package__	Bio.PopGen.Async-module.html#__package__
Bio.PopGen.Async.Local	Bio.PopGen.Async.Local-module.html
Bio.PopGen.Async.Local.__package__	Bio.PopGen.Async.Local-module.html#__package__
Bio.PopGen.FDist	Bio.PopGen.FDist-module.html
Bio.PopGen.FDist.__package__	Bio.PopGen.FDist-module.html#__package__
Bio.PopGen.FDist.xml_support	Bio.PopGen.FDist-module.html#xml_support
Bio.PopGen.FDist.Async	Bio.PopGen.FDist.Async-module.html
Bio.PopGen.FDist.Async.__package__	Bio.PopGen.FDist.Async-module.html#__package__
Bio.PopGen.FDist.Controller	Bio.PopGen.FDist.Controller-module.html
Bio.PopGen.FDist.Controller.__package__	Bio.PopGen.FDist.Controller-module.html#__package__
Bio.PopGen.FDist.Utils	Bio.PopGen.FDist.Utils-module.html
Bio.PopGen.FDist.Utils.approximate_fst	Bio.PopGen.FDist.Utils-module.html#approximate_fst
Bio.PopGen.FDist.Utils.__package__	Bio.PopGen.FDist.Utils-module.html#__package__
Bio.PopGen.FDist.Utils.convert_genepop_to_fdist	Bio.PopGen.FDist.Utils-module.html#convert_genepop_to_fdist
Bio.PopGen.GenePop	Bio.PopGen.GenePop-module.html
Bio.PopGen.GenePop.parse	Bio.PopGen.GenePop-module.html#parse
Bio.PopGen.GenePop.__package__	Bio.PopGen.GenePop-module.html#__package__
Bio.PopGen.GenePop.xml_support	Bio.PopGen.GenePop-module.html#xml_support
Bio.PopGen.GenePop.Controller	Bio.PopGen.GenePop.Controller-module.html
Bio.PopGen.GenePop.Controller._gp_float	Bio.PopGen.GenePop.Controller-module.html#_gp_float
Bio.PopGen.GenePop.Controller._gp_int	Bio.PopGen.GenePop.Controller-module.html#_gp_int
Bio.PopGen.GenePop.Controller.generic_run	Bio.Application-module.html#generic_run
Bio.PopGen.GenePop.Controller.__package__	Bio.PopGen.GenePop.Controller-module.html#__package__
Bio.PopGen.GenePop.Controller._read_allele_freq_table	Bio.PopGen.GenePop.Controller-module.html#_read_allele_freq_table
Bio.PopGen.GenePop.Controller._read_headed_triangle_matrix	Bio.PopGen.GenePop.Controller-module.html#_read_headed_triangle_matrix
Bio.PopGen.GenePop.Controller._read_table	Bio.PopGen.GenePop.Controller-module.html#_read_table
Bio.PopGen.GenePop.Controller._read_triangle_matrix	Bio.PopGen.GenePop.Controller-module.html#_read_triangle_matrix
Bio.PopGen.GenePop.Controller._hw_func	Bio.PopGen.GenePop.Controller-module.html#_hw_func
Bio.PopGen.GenePop.EasyController	Bio.PopGen.GenePop.EasyController-module.html
Bio.PopGen.GenePop.EasyController.__package__	Bio.PopGen.GenePop.EasyController-module.html#__package__
Bio.PopGen.GenePop.Utils	Bio.PopGen.GenePop.Utils-module.html
Bio.PopGen.GenePop.Utils.__package__	Bio.PopGen.GenePop.Utils-module.html#__package__
Bio.PopGen.SimCoal	Bio.PopGen.SimCoal-module.html
Bio.PopGen.SimCoal.test_path	Bio.PopGen.SimCoal-module.html#test_path
Bio.PopGen.SimCoal.__package__	Bio.PopGen.SimCoal-module.html#__package__
Bio.PopGen.SimCoal.instance	Bio.PopGen.SimCoal-module.html#instance
Bio.PopGen.SimCoal.builtin_tpl_dir	Bio.PopGen.SimCoal-module.html#builtin_tpl_dir
Bio.PopGen.SimCoal.Async	Bio.PopGen.SimCoal.Async-module.html
Bio.PopGen.SimCoal.Async.__package__	Bio.PopGen.SimCoal.Async-module.html#__package__
Bio.PopGen.SimCoal.Cache	Bio.PopGen.SimCoal.Cache-module.html
Bio.PopGen.SimCoal.Cache.__package__	Bio.PopGen.SimCoal.Cache-module.html#__package__
Bio.PopGen.SimCoal.Controller	Bio.PopGen.SimCoal.Controller-module.html
Bio.PopGen.SimCoal.Controller.__package__	Bio.PopGen.SimCoal.Controller-module.html#__package__
Bio.PopGen.SimCoal.Template	Bio.PopGen.SimCoal.Template-module.html
Bio.PopGen.SimCoal.Template.generate_join_events	Bio.PopGen.SimCoal.Template-module.html#generate_join_events
Bio.PopGen.SimCoal.Template.get_chr_template	Bio.PopGen.SimCoal.Template-module.html#get_chr_template
Bio.PopGen.SimCoal.Template.dupe	Bio.PopGen.SimCoal.Template-module.html#dupe
Bio.PopGen.SimCoal.Template.get_xy_from_matrix	Bio.PopGen.SimCoal.Template-module.html#get_xy_from_matrix
Bio.PopGen.SimCoal.Template.generate_simcoal_from_template	Bio.PopGen.SimCoal.Template-module.html#generate_simcoal_from_template
Bio.PopGen.SimCoal.Template.generate_null_mat	Bio.PopGen.SimCoal.Template-module.html#generate_null_mat
Bio.PopGen.SimCoal.Template.__package__	Bio.PopGen.SimCoal.Template-module.html#__package__
Bio.PopGen.SimCoal.Template.get_step_2d	Bio.PopGen.SimCoal.Template-module.html#get_step_2d
Bio.PopGen.SimCoal.Template._gen_loci	Bio.PopGen.SimCoal.Template-module.html#_gen_loci
Bio.PopGen.SimCoal.Template.process_para	Bio.PopGen.SimCoal.Template-module.html#process_para
Bio.PopGen.SimCoal.Template.generate_model	Bio.PopGen.SimCoal.Template-module.html#generate_model
Bio.PopGen.SimCoal.Template.generate_island_mat	Bio.PopGen.SimCoal.Template-module.html#generate_island_mat
Bio.PopGen.SimCoal.Template.generate_ssm2d_mat	Bio.PopGen.SimCoal.Template-module.html#generate_ssm2d_mat
Bio.PopGen.SimCoal.Template.exec_template	Bio.PopGen.SimCoal.Template-module.html#exec_template
Bio.PopGen.SimCoal.Template.no_processor	Bio.PopGen.SimCoal.Template-module.html#no_processor
Bio.PopGen.SimCoal.Template.process_text	Bio.PopGen.SimCoal.Template-module.html#process_text
Bio.PopGen.SimCoal.Template.get_demography_template	Bio.PopGen.SimCoal.Template-module.html#get_demography_template
Bio.PropertyManager	Bio.PropertyManager-module.html
Bio.PropertyManager.default_manager	Bio.PropertyManager-module.html#default_manager
Bio.PropertyManager.__package__	Bio.PropertyManager-module.html#__package__
Bio.Prosite	Bio.Prosite-module.html
Bio.Prosite.parse	Bio.Prosite-module.html#parse
Bio.Prosite._extract_pattern_hits	Bio.Prosite-module.html#_extract_pattern_hits
Bio.Prosite.__package__	Bio.Prosite-module.html#__package__
Bio.Prosite.index_file	Bio.Prosite-module.html#index_file
Bio.Prosite.read	Bio.Prosite-module.html#read
Bio.Prosite.xml_support	Bio.Prosite-module.html#xml_support
Bio.Prosite.scan_sequence_expasy	Bio.Prosite-module.html#scan_sequence_expasy
Bio.Prosite.Pattern	Bio.Prosite.Pattern-module.html
Bio.Prosite.Pattern._prosite_trans	Bio.Prosite.Pattern-module.html#_prosite_trans
Bio.Prosite.Pattern.prosite_alphabet	Bio.Prosite.Pattern-module.html#prosite_alphabet
Bio.Prosite.Pattern.prosite_to_grouped_re	Bio.Prosite.Pattern-module.html#prosite_to_grouped_re
Bio.Prosite.Pattern._verify_test	Bio.Prosite.Pattern-module.html#_verify_test
Bio.Prosite.Pattern.prosite_term_re	Bio.Prosite.Pattern-module.html#prosite_term_re
Bio.Prosite.Pattern.verify_pattern	Bio.Prosite.Pattern-module.html#verify_pattern
Bio.Prosite.Pattern.pattern_mapping	Bio.Prosite.Pattern-module.html#pattern_mapping
Bio.Prosite.Pattern.__package__	Bio.Prosite.Pattern-module.html#__package__
Bio.Prosite.Pattern.compile	Bio.Prosite.Pattern-module.html#compile
Bio.Prosite.Pattern.prosite_re	Bio.Prosite.Pattern-module.html#prosite_re
Bio.Prosite.Pattern.prosite_to_re	Bio.Prosite.Pattern-module.html#prosite_to_re
Bio.Prosite.Pattern.find_terms	Bio.Prosite.Pattern-module.html#find_terms
Bio.Prosite.Prodoc	Bio.Prosite.Prodoc-module.html
Bio.Prosite.Prodoc.parse	Bio.Prosite.Prodoc-module.html#parse
Bio.Prosite.Prodoc.index_file	Bio.Prosite.Prodoc-module.html#index_file
Bio.Prosite.Prodoc.__package__	Bio.Prosite.Prodoc-module.html#__package__
Bio.Prosite.Prodoc.read	Bio.Prosite.Prodoc-module.html#read
Bio.Prosite.Prodoc.xml_support	Bio.Prosite.Prodoc-module.html#xml_support
Bio.PubMed	Bio.PubMed-module.html
Bio.PubMed.__warningregistry__	Bio.PubMed-module.html#__warningregistry__
Bio.PubMed.search_for	Bio.PubMed-module.html#search_for
Bio.PubMed.__package__	Bio.PubMed-module.html#__package__
Bio.PubMed.find_related	Bio.PubMed-module.html#find_related
Bio.PubMed.download_many	Bio.PubMed-module.html#download_many
Bio.Restriction	Bio.Restriction-module.html
Bio.Restriction.PrintFormat	Bio.Restriction.PrintFormat-module.html
Bio.Restriction.RanaConfig	Bio.Restriction.RanaConfig-module.html
Bio.Restriction.RanaConfig.ftp_emb_e	Bio.Restriction.RanaConfig-module.html#ftp_emb_e
Bio.Restriction.RanaConfig.Indent	Bio.Restriction.RanaConfig-module.html#Indent
Bio.Restriction.RanaConfig.Rebase_name	Bio.Restriction.RanaConfig-module.html#Rebase_name
Bio.Restriction.RanaConfig.ftp_Rebase	Bio.Restriction.RanaConfig-module.html#ftp_Rebase
Bio.Restriction.RanaConfig.ConsoleWidth	Bio.Restriction.RanaConfig-module.html#ConsoleWidth
Bio.Restriction.RanaConfig.ftp_proxy	Bio.Restriction.RanaConfig-module.html#ftp_proxy
Bio.Restriction.RanaConfig.MaxSize	Bio.Restriction.RanaConfig-module.html#MaxSize
Bio.Restriction.RanaConfig.ftp_emb_s	Bio.Restriction.RanaConfig-module.html#ftp_emb_s
Bio.Restriction.RanaConfig.NameWidth	Bio.Restriction.RanaConfig-module.html#NameWidth
Bio.Restriction.RanaConfig.Rebase_password	Bio.Restriction.RanaConfig-module.html#Rebase_password
Bio.Restriction.RanaConfig.ftp_emb_r	Bio.Restriction.RanaConfig-module.html#ftp_emb_r
Bio.Restriction.Restriction	Bio.Restriction.Restriction-module.html
Bio.Restriction.Restriction.matching	Bio.Restriction.Restriction-module.html#matching
Bio.Restriction.Restriction.NonComm	Bio.Restriction.Restriction-module.html#NonComm
Bio.Restriction.Restriction.CommOnly	Bio.Restriction.Restriction-module.html#CommOnly
Bio.Restriction.Restriction.DNA	Bio.Restriction.Restriction-module.html#DNA
Bio.Restriction.Restriction.AllEnzymes	Bio.Restriction.Restriction-module.html#AllEnzymes
Bio.Restriction.Restriction_Dictionary	Bio.Restriction.Restriction_Dictionary-module.html
Bio.Restriction.Restriction_Dictionary.rest_dict	Bio.Restriction.Restriction_Dictionary-module.html#rest_dict
Bio.Restriction.Restriction_Dictionary.typedict	Bio.Restriction.Restriction_Dictionary-module.html#typedict
Bio.Restriction.Restriction_Dictionary.suppliers	Bio.Restriction.Restriction_Dictionary-module.html#suppliers
Bio.Restriction._Update	Bio.Restriction._Update-module.html
Bio.Restriction._Update.RestrictionCompiler	Bio.Restriction._Update.RestrictionCompiler-module.html
Bio.Restriction._Update.RestrictionCompiler.classdict	Bio.Restriction._Update.RestrictionCompiler-module.html#classdict
Bio.Restriction._Update.RestrictionCompiler.enzymedict	Bio.Restriction._Update.RestrictionCompiler-module.html#enzymedict
Bio.Restriction._Update.RestrictionCompiler.regex	Bio.Restriction._Update.RestrictionCompiler-module.html#regex
Bio.Restriction._Update.RestrictionCompiler.is_palindrom	Bio.Restriction._Update.RestrictionCompiler-module.html#is_palindrom
Bio.Restriction._Update.RestrictionCompiler.Antiparallel	Bio.Restriction._Update.RestrictionCompiler-module.html#Antiparallel
Bio.Restriction._Update.RestrictionCompiler.start	Bio.Restriction._Update.RestrictionCompiler-module.html#start
Bio.Restriction._Update.RestrictionCompiler.dna_alphabet	Bio.Restriction._Update.RestrictionCompiler-module.html#dna_alphabet
Bio.Restriction._Update.RestrictionCompiler.DNA	Bio.Restriction._Update.RestrictionCompiler-module.html#DNA
Bio.Restriction._Update.RestrictionCompiler.complement_alphabet	Bio.Restriction._Update.RestrictionCompiler-module.html#complement_alphabet
Bio.Restriction._Update.RestrictionCompiler.suppliersdict	Bio.Restriction._Update.RestrictionCompiler-module.html#suppliersdict
Bio.Restriction._Update.RestrictionCompiler.typedict	Bio.Restriction._Update.RestrictionCompiler-module.html#typedict
Bio.Restriction._Update.RestrictionCompiler.BaseExpand	Bio.Restriction._Update.RestrictionCompiler-module.html#BaseExpand
Bio.Restriction._Update.RestrictionCompiler.LocalTime	Bio.Restriction._Update.RestrictionCompiler-module.html#LocalTime
Bio.Restriction._Update.Update	Bio.Restriction._Update.Update-module.html
Bio.SCOP	Bio.SCOP-module.html
Bio.SCOP.astralBibIds	Bio.SCOP-module.html#astralBibIds
Bio.SCOP.search	Bio.SCOP-module.html#search
Bio.SCOP.cmp_sccs	Bio.SCOP-module.html#cmp_sccs
Bio.SCOP._nodetype_to_code	Bio.SCOP-module.html#_nodetype_to_code
Bio.SCOP.nodeCodeOrder	Bio.SCOP-module.html#nodeCodeOrder
Bio.SCOP._domain_re	Bio.SCOP-module.html#_domain_re
Bio.SCOP.parse_domain	Bio.SCOP-module.html#parse_domain
Bio.SCOP.__package__	Bio.SCOP-module.html#__package__
Bio.SCOP.astralEv_to_sql	Bio.SCOP-module.html#astralEv_to_sql
Bio.SCOP.astralEv_to_file	Bio.SCOP-module.html#astralEv_to_file
Bio.SCOP._open	Bio.SCOP-module.html#_open
Bio.SCOP.nodeCodeDict	Bio.SCOP-module.html#nodeCodeDict
Bio.SCOP.astralEvs	Bio.SCOP-module.html#astralEvs
Bio.SCOP._open_scop_file	Bio.SCOP-module.html#_open_scop_file
Bio.SCOP.Cla	Bio.SCOP.Cla-module.html
Bio.SCOP.Cla.__package__	Bio.SCOP.Cla-module.html#__package__
Bio.SCOP.Cla.parse	Bio.SCOP.Cla-module.html#parse
Bio.SCOP.Des	Bio.SCOP.Des-module.html
Bio.SCOP.Des.parse	Bio.SCOP.Des-module.html#parse
Bio.SCOP.Des.__package__	Bio.SCOP.Des-module.html#__package__
Bio.SCOP.Dom	Bio.SCOP.Dom-module.html
Bio.SCOP.Dom.__package__	Bio.SCOP.Dom-module.html#__package__
Bio.SCOP.Dom.parse	Bio.SCOP.Dom-module.html#parse
Bio.SCOP.FileIndex	Bio.SCOP.FileIndex-module.html
Bio.SCOP.FileIndex.__package__	Bio.SCOP.FileIndex-module.html#__package__
Bio.SCOP.FileIndex.__warningregistry__	Bio.SCOP.FileIndex-module.html#__warningregistry__
Bio.SCOP.Hie	Bio.SCOP.Hie-module.html
Bio.SCOP.Hie.parse	Bio.SCOP.Hie-module.html#parse
Bio.SCOP.Hie.__package__	Bio.SCOP.Hie-module.html#__package__
Bio.SCOP.Raf	Bio.SCOP.Raf-module.html
Bio.SCOP.Raf.to_one_letter_code	Bio.SCOP.Raf-module.html#to_one_letter_code
Bio.SCOP.Raf.parse	Bio.SCOP.Raf-module.html#parse
Bio.SCOP.Raf.__package__	Bio.SCOP.Raf-module.html#__package__
Bio.SCOP.Raf.normalize_letters	Bio.SCOP.Raf-module.html#normalize_letters
Bio.SCOP.Residues'	Bio.SCOP.Residues%27-module.html
Bio.SCOP.Residues'._pdbid_re	Bio.SCOP.Residues%27-module.html#_pdbid_re
Bio.SCOP.Residues'._fragment_re	Bio.SCOP.Residues%27-module.html#_fragment_re
Bio.SCOP.Residues'.__package__	Bio.SCOP.Residues%27-module.html#__package__
Bio.SVDSuperimposer	Bio.SVDSuperimposer-module.html
Bio.SVDSuperimposer.sqrt	Bio.SVDSuperimposer-module.html#sqrt
Bio.SVDSuperimposer.__package__	Bio.SVDSuperimposer-module.html#__package__
Bio.SVDSuperimposer.SVDSuperimposer'	Bio.SVDSuperimposer.SVDSuperimposer%27-module.html
Bio.SVDSuperimposer.SVDSuperimposer'.sqrt	Bio.SVDSuperimposer.SVDSuperimposer%27-module.html#sqrt
Bio.SVDSuperimposer.SVDSuperimposer'.__package__	Bio.SVDSuperimposer.SVDSuperimposer%27-module.html#__package__
Bio.Search	Bio.Search-module.html
Bio.Search.__package__	Bio.Search-module.html#__package__
Bio.Seq	Bio.Seq-module.html
Bio.Seq.back_transcribe	Bio.Seq-module.html#back_transcribe
Bio.Seq.translate	Bio.Seq-module.html#translate
Bio.Seq._test	Bio.Seq-module.html#_test
Bio.Seq._translate_str	Bio.Seq-module.html#_translate_str
Bio.Seq.__package__	Bio.Seq-module.html#__package__
Bio.Seq._maketrans	Bio.Seq-module.html#_maketrans
Bio.Seq.transcribe	Bio.Seq-module.html#transcribe
Bio.Seq._rna_complement_table	Bio.Seq-module.html#_rna_complement_table
Bio.Seq._dna_complement_table	Bio.Seq-module.html#_dna_complement_table
Bio.Seq.reverse_complement	Bio.Seq-module.html#reverse_complement
Bio.SeqFeature	Bio.SeqFeature-module.html
Bio.SeqFeature.__package__	Bio.SeqFeature-module.html#__package__
Bio.SeqIO	Bio.SeqIO-module.html
Bio.SeqIO._test	Bio.SeqIO-module.html#_test
Bio.SeqIO.parse	Bio.SeqIO-module.html#parse
Bio.SeqIO.index	Bio.SeqIO-module.html#index
Bio.SeqIO._FormatToIterator	Bio.SeqIO-module.html#_FormatToIterator
Bio.SeqIO.to_alignment	Bio.SeqIO-module.html#to_alignment
Bio.SeqIO.__package__	Bio.SeqIO-module.html#__package__
Bio.SeqIO.write	Bio.SeqIO-module.html#write
Bio.SeqIO._iterate_via_AlignIO	Bio.SeqIO-module.html#_iterate_via_AlignIO
Bio.SeqIO._get_base_alphabet	Bio.Alphabet-module.html#_get_base_alphabet
Bio.SeqIO._force_alphabet	Bio.SeqIO-module.html#_force_alphabet
Bio.SeqIO.convert	Bio.SeqIO-module.html#convert
Bio.SeqIO.read	Bio.SeqIO-module.html#read
Bio.SeqIO.to_dict	Bio.SeqIO-module.html#to_dict
Bio.SeqIO._FormatToWriter	Bio.SeqIO-module.html#_FormatToWriter
Bio.SeqIO.AceIO	Bio.SeqIO.AceIO-module.html
Bio.SeqIO.AceIO._test	Bio.SeqIO.AceIO-module.html#_test
Bio.SeqIO.AceIO.AceIterator	Bio.SeqIO.AceIO-module.html#AceIterator
Bio.SeqIO.AceIO.__package__	Bio.SeqIO.AceIO-module.html#__package__
Bio.SeqIO.FastaIO	Bio.SeqIO.FastaIO-module.html
Bio.SeqIO.FastaIO.FastaIterator	Bio.SeqIO.FastaIO-module.html#FastaIterator
Bio.SeqIO.FastaIO.__package__	Bio.SeqIO.FastaIO-module.html#__package__
Bio.SeqIO.IgIO	Bio.SeqIO.IgIO-module.html
Bio.SeqIO.IgIO.IgIterator	Bio.SeqIO.IgIO-module.html#IgIterator
Bio.SeqIO.IgIO.__package__	Bio.SeqIO.IgIO-module.html#__package__
Bio.SeqIO.InsdcIO	Bio.SeqIO.InsdcIO-module.html
Bio.SeqIO.InsdcIO.EmblIterator	Bio.SeqIO.InsdcIO-module.html#EmblIterator
Bio.SeqIO.InsdcIO._insdc_feature_position_string	Bio.SeqIO.InsdcIO-module.html#_insdc_feature_position_string
Bio.SeqIO.InsdcIO._insdc_location_string_ignoring_strand_and_subfeatures	Bio.SeqIO.InsdcIO-module.html#_insdc_location_string_ignoring_strand_and_subfeatures
Bio.SeqIO.InsdcIO.GenBankCdsFeatureIterator	Bio.SeqIO.InsdcIO-module.html#GenBankCdsFeatureIterator
Bio.SeqIO.InsdcIO.__package__	Bio.SeqIO.InsdcIO-module.html#__package__
Bio.SeqIO.InsdcIO.EmblCdsFeatureIterator	Bio.SeqIO.InsdcIO-module.html#EmblCdsFeatureIterator
Bio.SeqIO.InsdcIO._insdc_feature_location_string	Bio.SeqIO.InsdcIO-module.html#_insdc_feature_location_string
Bio.SeqIO.InsdcIO.GenBankIterator	Bio.SeqIO.InsdcIO-module.html#GenBankIterator
Bio.SeqIO.Interfaces	Bio.SeqIO.Interfaces-module.html
Bio.SeqIO.Interfaces.__package__	Bio.SeqIO.Interfaces-module.html#__package__
Bio.SeqIO.PhdIO	Bio.SeqIO.PhdIO-module.html
Bio.SeqIO.PhdIO.PhdIterator	Bio.SeqIO.PhdIO-module.html#PhdIterator
Bio.SeqIO.PhdIO._test	Bio.SeqIO.PhdIO-module.html#_test
Bio.SeqIO.PhdIO.__package__	Bio.SeqIO.PhdIO-module.html#__package__
Bio.SeqIO.PirIO	Bio.SeqIO.PirIO-module.html
Bio.SeqIO.PirIO.PirIterator	Bio.SeqIO.PirIO-module.html#PirIterator
Bio.SeqIO.PirIO._pir_alphabets	Bio.SeqIO.PirIO-module.html#_pir_alphabets
Bio.SeqIO.PirIO.__package__	Bio.SeqIO.PirIO-module.html#__package__
Bio.SeqIO.QualityIO	Bio.SeqIO.QualityIO-module.html
Bio.SeqIO.QualityIO._solexa_to_illumina_quality_str	Bio.SeqIO.QualityIO-module.html#_solexa_to_illumina_quality_str
Bio.SeqIO.QualityIO.SOLEXA_SCORE_OFFSET	Bio.SeqIO.QualityIO-module.html#SOLEXA_SCORE_OFFSET
Bio.SeqIO.QualityIO.PairedFastaQualIterator	Bio.SeqIO.QualityIO-module.html#PairedFastaQualIterator
Bio.SeqIO.QualityIO._get_solexa_quality_str	Bio.SeqIO.QualityIO-module.html#_get_solexa_quality_str
Bio.SeqIO.QualityIO.SANGER_SCORE_OFFSET	Bio.SeqIO.QualityIO-module.html#SANGER_SCORE_OFFSET
Bio.SeqIO.QualityIO.FastqPhredIterator	Bio.SeqIO.QualityIO-module.html#FastqPhredIterator
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Bio.SeqIO.QualityIO.QualPhredIterator	Bio.SeqIO.QualityIO-module.html#QualPhredIterator
Bio.SeqIO.QualityIO.solexa_quality_from_phred	Bio.SeqIO.QualityIO-module.html#solexa_quality_from_phred
Bio.SeqIO.QualityIO._phred_to_illumina_quality_str	Bio.SeqIO.QualityIO-module.html#_phred_to_illumina_quality_str
Bio.SeqIO.QualityIO._test	Bio.SeqIO.QualityIO-module.html#_test
Bio.SeqIO.QualityIO.phred_quality_from_solexa	Bio.SeqIO.QualityIO-module.html#phred_quality_from_solexa
Bio.SeqIO.QualityIO.FastqGeneralIterator	Bio.SeqIO.QualityIO-module.html#FastqGeneralIterator
Bio.SeqIO.QualityIO._get_sanger_quality_str	Bio.SeqIO.QualityIO-module.html#_get_sanger_quality_str
Bio.SeqIO.QualityIO.FastqIlluminaIterator	Bio.SeqIO.QualityIO-module.html#FastqIlluminaIterator
Bio.SeqIO.QualityIO._get_illumina_quality_str	Bio.SeqIO.QualityIO-module.html#_get_illumina_quality_str
Bio.SeqIO.QualityIO._get_phred_quality	Bio.SeqIO.QualityIO-module.html#_get_phred_quality
Bio.SeqIO.QualityIO._phred_to_solexa_quality_str	Bio.SeqIO.QualityIO-module.html#_phred_to_solexa_quality_str
Bio.SeqIO.QualityIO.FastqSolexaIterator	Bio.SeqIO.QualityIO-module.html#FastqSolexaIterator
Bio.SeqIO.QualityIO._solexa_to_solexa_quality_str	Bio.SeqIO.QualityIO-module.html#_solexa_to_solexa_quality_str
Bio.SeqIO.QualityIO._phred_to_sanger_quality_str	Bio.SeqIO.QualityIO-module.html#_phred_to_sanger_quality_str
Bio.SeqIO.QualityIO._solexa_to_sanger_quality_str	Bio.SeqIO.QualityIO-module.html#_solexa_to_sanger_quality_str
Bio.SeqIO.SwissIO	Bio.SeqIO.SwissIO-module.html
Bio.SeqIO.SwissIO.__package__	Bio.SeqIO.SwissIO-module.html#__package__
Bio.SeqIO.SwissIO.SwissIterator	Bio.SeqIO.SwissIO-module.html#SwissIterator
Bio.SeqIO.TabIO	Bio.SeqIO.TabIO-module.html
Bio.SeqIO.TabIO.__package__	Bio.SeqIO.TabIO-module.html#__package__
Bio.SeqIO.TabIO.TabIterator	Bio.SeqIO.TabIO-module.html#TabIterator
Bio.SeqIO._convert	Bio.SeqIO._convert-module.html
Bio.SeqIO._convert._fastq_solexa_convert_fastq_solexa	Bio.SeqIO._convert-module.html#_fastq_solexa_convert_fastq_solexa
Bio.SeqIO._convert._fastq_solexa_convert_fastq_sanger	Bio.SeqIO._convert-module.html#_fastq_solexa_convert_fastq_sanger
Bio.SeqIO._convert._fastq_convert_fasta	Bio.SeqIO._convert-module.html#_fastq_convert_fasta
Bio.SeqIO._convert._handle_convert	Bio.SeqIO._convert-module.html#_handle_convert
Bio.SeqIO._convert._converter	Bio.SeqIO._convert-module.html#_converter
Bio.SeqIO._convert._fastq_convert_tab	Bio.SeqIO._convert-module.html#_fastq_convert_tab
Bio.SeqIO._convert._fastq_illumina_convert_fastq_illumina	Bio.SeqIO._convert-module.html#_fastq_illumina_convert_fastq_illumina
Bio.SeqIO._convert._fastq_sanger_convert_fastq_solexa	Bio.SeqIO._convert-module.html#_fastq_sanger_convert_fastq_solexa
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Bio.SeqIO._convert._fastq_sanger_convert_fastq_sanger	Bio.SeqIO._convert-module.html#_fastq_sanger_convert_fastq_sanger
Bio.SeqIO._convert._genbank_convert_fasta	Bio.SeqIO._convert-module.html#_genbank_convert_fasta
Bio.SeqIO._convert._fastq_generic2	Bio.SeqIO._convert-module.html#_fastq_generic2
Bio.SeqIO._convert._fastq_generic	Bio.SeqIO._convert-module.html#_fastq_generic
Bio.SeqIO._convert._fastq_solexa_convert_fastq_illumina	Bio.SeqIO._convert-module.html#_fastq_solexa_convert_fastq_illumina
Bio.SeqIO._convert._fastq_illumina_convert_fastq_solexa	Bio.SeqIO._convert-module.html#_fastq_illumina_convert_fastq_solexa
Bio.SeqIO._convert._embl_convert_fasta	Bio.SeqIO._convert-module.html#_embl_convert_fasta
Bio.SeqIO._convert._fastq_illumina_convert_fastq_sanger	Bio.SeqIO._convert-module.html#_fastq_illumina_convert_fastq_sanger
Bio.SeqIO._convert._fastq_sanger_convert_fastq_illumina	Bio.SeqIO._convert-module.html#_fastq_sanger_convert_fastq_illumina
Bio.SeqIO._index	Bio.SeqIO._index-module.html
Bio.SeqIO._index._FormatToIndexedDict	Bio.SeqIO._index-module.html#_FormatToIndexedDict
Bio.SeqIO._index.__package__	Bio.SeqIO._index-module.html#__package__
Bio.SeqRecord	Bio.SeqRecord-module.html
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Bio.SeqUtils	Bio.SeqUtils-module.html
Bio.SeqUtils.xGC_skew	Bio.SeqUtils-module.html#xGC_skew
Bio.SeqUtils.GC_Frame	Bio.SeqUtils-module.html#GC_Frame
Bio.SeqUtils.apply_on_multi_fasta	Bio.SeqUtils-module.html#apply_on_multi_fasta
Bio.SeqUtils.six_frame_translations	Bio.SeqUtils-module.html#six_frame_translations
Bio.SeqUtils.molecular_weight	Bio.SeqUtils-module.html#molecular_weight
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Bio.SeqUtils.GC123	Bio.SeqUtils-module.html#GC123
Bio.SeqUtils.proteinX	Bio.SeqUtils-module.html#proteinX
Bio.SeqUtils.fasta_uniqids	Bio.SeqUtils-module.html#fasta_uniqids
Bio.SeqUtils.nt_search	Bio.SeqUtils-module.html#nt_search
Bio.SeqUtils.GC	Bio.SeqUtils-module.html#GC
Bio.SeqUtils.quick_FASTA_reader	Bio.SeqUtils-module.html#quick_FASTA_reader
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Bio.SeqUtils.quicker_apply_on_multi_fasta	Bio.SeqUtils-module.html#quicker_apply_on_multi_fasta
Bio.SeqUtils.GC_skew	Bio.SeqUtils-module.html#GC_skew
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Bio.SeqUtils.seq3	Bio.SeqUtils-module.html#seq3
Bio.SeqUtils.CheckSum	Bio.SeqUtils.CheckSum-module.html
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Bio.SeqUtils.CheckSum.gcg	Bio.SeqUtils.CheckSum-module.html#gcg
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Bio.SeqUtils.CodonUsage	Bio.SeqUtils.CodonUsage-module.html
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Bio.SeqUtils.IsoelectricPoint	Bio.SeqUtils.IsoelectricPoint-module.html
Bio.SeqUtils.IsoelectricPoint.pKnterminal	Bio.SeqUtils.IsoelectricPoint-module.html#pKnterminal
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Bio.SeqUtils.IsoelectricPoint.charged_aas	Bio.SeqUtils.IsoelectricPoint-module.html#charged_aas
Bio.SeqUtils.MeltingTemp	Bio.SeqUtils.MeltingTemp-module.html
Bio.SeqUtils.MeltingTemp.Tm_staluc	Bio.SeqUtils.MeltingTemp-module.html#Tm_staluc
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Bio.SeqUtils.ProtParam	Bio.SeqUtils.ProtParam-module.html
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Bio.SeqUtils.ProtParamData	Bio.SeqUtils.ProtParamData-module.html
Bio.SeqUtils.ProtParamData.em	Bio.SeqUtils.ProtParamData-module.html#em
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Bio.SeqUtils.ProtParamData.kd	Bio.SeqUtils.ProtParamData-module.html#kd
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Bio.Sequencing.Ace	Bio.Sequencing.Ace-module.html
Bio.Sequencing.Ace.read	Bio.Sequencing.Ace-module.html#read
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Bio.Sequencing.Ace.parse	Bio.Sequencing.Ace-module.html#parse
Bio.Sequencing.Applications	Bio.Sequencing.Applications-module.html
Bio.Sequencing.Applications.__package__	Bio.Sequencing.Applications-module.html#__package__
Bio.Sequencing.Applications._Novoalign	Bio.Sequencing.Applications._Novoalign-module.html
Bio.Sequencing.Applications._Novoalign.__package__	Bio.Sequencing.Applications._Novoalign-module.html#__package__
Bio.Sequencing.Phd	Bio.Sequencing.Phd-module.html
Bio.Sequencing.Phd.read	Bio.Sequencing.Phd-module.html#read
Bio.Sequencing.Phd.CKEYWORDS	Bio.Sequencing.Phd-module.html#CKEYWORDS
Bio.Sequencing.Phd.__package__	Bio.Sequencing.Phd-module.html#__package__
Bio.Sequencing.Phd.parse	Bio.Sequencing.Phd-module.html#parse
Bio.Statistics	Bio.Statistics-module.html
Bio.Statistics.__package__	Bio.Statistics-module.html#__package__
Bio.Statistics.lowess	Bio.Statistics.lowess-module.html
Bio.Statistics.lowess.lowess	Bio.Statistics.lowess-module.html#lowess
Bio.Statistics.lowess._test	Bio.Statistics.lowess-module.html#_test
Bio.Statistics.lowess.__package__	Bio.Statistics.lowess-module.html#__package__
Bio.Statistics.lowess.x	Bio.Statistics.lowess-module.html#x
Bio.SubsMat	Bio.SubsMat-module.html
Bio.SubsMat.diagNO	Bio.SubsMat-module.html#diagNO
Bio.SubsMat.two_mat_DJS	Bio.SubsMat-module.html#two_mat_DJS
Bio.SubsMat.LO	Bio.SubsMat-module.html#LO
Bio.SubsMat.ACCREP	Bio.SubsMat-module.html#ACCREP
Bio.SubsMat.__package__	Bio.SubsMat-module.html#__package__
Bio.SubsMat.diagONLY	Bio.SubsMat-module.html#diagONLY
Bio.SubsMat.make_log_odds_matrix	Bio.SubsMat-module.html#make_log_odds_matrix
Bio.SubsMat.SUBS	Bio.SubsMat-module.html#SUBS
Bio.SubsMat._build_exp_freq_mat	Bio.SubsMat-module.html#_build_exp_freq_mat
Bio.SubsMat.diagALL	Bio.SubsMat-module.html#diagALL
Bio.SubsMat.OBSFREQ	Bio.SubsMat-module.html#OBSFREQ
Bio.SubsMat._build_log_odds_mat	Bio.SubsMat-module.html#_build_log_odds_mat
Bio.SubsMat.EXPFREQ	Bio.SubsMat-module.html#EXPFREQ
Bio.SubsMat.observed_frequency_to_substitution_matrix	Bio.SubsMat-module.html#observed_frequency_to_substitution_matrix
Bio.SubsMat._build_obs_freq_mat	Bio.SubsMat-module.html#_build_obs_freq_mat
Bio.SubsMat.EPSILON	Bio.SubsMat-module.html#EPSILON
Bio.SubsMat._build_subs_mat	Bio.SubsMat-module.html#_build_subs_mat
Bio.SubsMat.two_mat_correlation	Bio.SubsMat-module.html#two_mat_correlation
Bio.SubsMat.read_text_matrix	Bio.SubsMat-module.html#read_text_matrix
Bio.SubsMat.NOTYPE	Bio.SubsMat-module.html#NOTYPE
Bio.SubsMat._exp_freq_table_from_obs_freq	Bio.SubsMat-module.html#_exp_freq_table_from_obs_freq
Bio.SubsMat.two_mat_relative_entropy	Bio.SubsMat-module.html#two_mat_relative_entropy
Bio.SubsMat.FreqTable	Bio.SubsMat.FreqTable-module.html
Bio.SubsMat.FreqTable.COUNT	Bio.SubsMat.FreqTable-module.html#COUNT
Bio.SubsMat.FreqTable.read_count	Bio.SubsMat.FreqTable-module.html#read_count
Bio.SubsMat.FreqTable.__package__	Bio.SubsMat.FreqTable-module.html#__package__
Bio.SubsMat.FreqTable.read_freq	Bio.SubsMat.FreqTable-module.html#read_freq
Bio.SubsMat.FreqTable.FREQ	Bio.SubsMat.FreqTable-module.html#FREQ
Bio.SubsMat.MatrixInfo	Bio.SubsMat.MatrixInfo-module.html
Bio.SubsMat.MatrixInfo.fitch	Bio.SubsMat.MatrixInfo-module.html#fitch
Bio.SubsMat.MatrixInfo.pam120	Bio.SubsMat.MatrixInfo-module.html#pam120
Bio.SubsMat.MatrixInfo.pam60	Bio.SubsMat.MatrixInfo-module.html#pam60
Bio.SubsMat.MatrixInfo.benner22	Bio.SubsMat.MatrixInfo-module.html#benner22
Bio.SubsMat.MatrixInfo.nwsgappep	Bio.SubsMat.MatrixInfo-module.html#nwsgappep
Bio.SubsMat.MatrixInfo.blosum85	Bio.SubsMat.MatrixInfo-module.html#blosum85
Bio.SubsMat.MatrixInfo.feng	Bio.SubsMat.MatrixInfo-module.html#feng
Bio.SubsMat.MatrixInfo.grant	Bio.SubsMat.MatrixInfo-module.html#grant
Bio.SubsMat.MatrixInfo.mclach	Bio.SubsMat.MatrixInfo-module.html#mclach
Bio.SubsMat.MatrixInfo.__package__	Bio.SubsMat.MatrixInfo-module.html#__package__
Bio.SubsMat.MatrixInfo.rao	Bio.SubsMat.MatrixInfo-module.html#rao
Bio.SubsMat.MatrixInfo.genetic	Bio.SubsMat.MatrixInfo-module.html#genetic
Bio.SubsMat.MatrixInfo.risler	Bio.SubsMat.MatrixInfo-module.html#risler
Bio.SubsMat.MatrixInfo.pam300	Bio.SubsMat.MatrixInfo-module.html#pam300
Bio.SubsMat.MatrixInfo.blosum60	Bio.SubsMat.MatrixInfo-module.html#blosum60
Bio.SubsMat.MatrixInfo.blosum62	Bio.SubsMat.MatrixInfo-module.html#blosum62
Bio.SubsMat.MatrixInfo.blosum45	Bio.SubsMat.MatrixInfo-module.html#blosum45
Bio.SubsMat.MatrixInfo.blosum65	Bio.SubsMat.MatrixInfo-module.html#blosum65
Bio.SubsMat.MatrixInfo.blosum40	Bio.SubsMat.MatrixInfo-module.html#blosum40
Bio.SubsMat.MatrixInfo.available_matrices	Bio.SubsMat.MatrixInfo-module.html#available_matrices
Bio.SubsMat.MatrixInfo.benner74	Bio.SubsMat.MatrixInfo-module.html#benner74
Bio.SubsMat.MatrixInfo.blosum95	Bio.SubsMat.MatrixInfo-module.html#blosum95
Bio.SubsMat.MatrixInfo.ident	Bio.SubsMat.MatrixInfo-module.html#ident
Bio.SubsMat.MatrixInfo.blosum90	Bio.SubsMat.MatrixInfo-module.html#blosum90
Bio.SubsMat.MatrixInfo.blosum100	Bio.SubsMat.MatrixInfo-module.html#blosum100
Bio.SubsMat.MatrixInfo.structure	Bio.SubsMat.MatrixInfo-module.html#structure
Bio.SubsMat.MatrixInfo.gonnet	Bio.SubsMat.MatrixInfo-module.html#gonnet
Bio.SubsMat.MatrixInfo.benner6	Bio.SubsMat.MatrixInfo-module.html#benner6
Bio.SubsMat.MatrixInfo.johnson	Bio.SubsMat.MatrixInfo-module.html#johnson
Bio.SubsMat.MatrixInfo.pam250	Bio.SubsMat.MatrixInfo-module.html#pam250
Bio.SubsMat.MatrixInfo.levin	Bio.SubsMat.MatrixInfo-module.html#levin
Bio.SubsMat.MatrixInfo.blosum80	Bio.SubsMat.MatrixInfo-module.html#blosum80
Bio.SubsMat.MatrixInfo.pam30	Bio.SubsMat.MatrixInfo-module.html#pam30
Bio.SubsMat.MatrixInfo.blosum50	Bio.SubsMat.MatrixInfo-module.html#blosum50
Bio.SubsMat.MatrixInfo.blosum35	Bio.SubsMat.MatrixInfo-module.html#blosum35
Bio.SubsMat.MatrixInfo.miyata	Bio.SubsMat.MatrixInfo-module.html#miyata
Bio.SubsMat.MatrixInfo.blosum55	Bio.SubsMat.MatrixInfo-module.html#blosum55
Bio.SubsMat.MatrixInfo.blosum30	Bio.SubsMat.MatrixInfo-module.html#blosum30
Bio.SubsMat.MatrixInfo.blosum70	Bio.SubsMat.MatrixInfo-module.html#blosum70
Bio.SubsMat.MatrixInfo.pam90	Bio.SubsMat.MatrixInfo-module.html#pam90
Bio.SubsMat.MatrixInfo.pam180	Bio.SubsMat.MatrixInfo-module.html#pam180
Bio.SubsMat.MatrixInfo.blosum75	Bio.SubsMat.MatrixInfo-module.html#blosum75
Bio.SwissProt	Bio.SwissProt-module.html
Bio.SwissProt._read_id	Bio.SwissProt-module.html#_read_id
Bio.SwissProt.read	Bio.SwissProt-module.html#read
Bio.SwissProt._read_ft	Bio.SwissProt-module.html#_read_ft
Bio.SwissProt._read	Bio.SwissProt-module.html#_read
Bio.SwissProt._read_oh	Bio.SwissProt-module.html#_read_oh
Bio.SwissProt._read_dr	Bio.SwissProt-module.html#_read_dr
Bio.SwissProt.__package__	Bio.SwissProt-module.html#__package__
Bio.SwissProt.parse	Bio.SwissProt-module.html#parse
Bio.SwissProt._read_cc	Bio.SwissProt-module.html#_read_cc
Bio.SwissProt._read_rc	Bio.SwissProt-module.html#_read_rc
Bio.SwissProt._read_rn	Bio.SwissProt-module.html#_read_rn
Bio.SwissProt._read_ox	Bio.SwissProt-module.html#_read_ox
Bio.SwissProt._read_rx	Bio.SwissProt-module.html#_read_rx
Bio.SwissProt._read_dt	Bio.SwissProt-module.html#_read_dt
Bio.SwissProt.KeyWList	Bio.SwissProt.KeyWList-module.html
Bio.SwissProt.KeyWList.parse	Bio.SwissProt.KeyWList-module.html#parse
Bio.SwissProt.KeyWList.__package__	Bio.SwissProt.KeyWList-module.html#__package__
Bio.SwissProt.SProt	Bio.SwissProt.SProt-module.html
Bio.SwissProt.SProt.parse	Bio.SwissProt.SProt-module.html#parse
Bio.SwissProt.SProt.index_file	Bio.SwissProt.SProt-module.html#index_file
Bio.SwissProt.SProt.__warningregistry__	Bio.SwissProt.SProt-module.html#__warningregistry__
Bio.SwissProt.SProt.__package__	Bio.SwissProt.SProt-module.html#__package__
Bio.SwissProt.SProt._CHOMP	Bio.SwissProt.SProt-module.html#_CHOMP
Bio.SwissProt.SProt.read	Bio.SwissProt.SProt-module.html#read
Bio.SwissProt.SProt.xml_support	Bio.SwissProt.SProt-module.html#xml_support
Bio.Transcribe	Bio.Transcribe-module.html
Bio.Transcribe.ambiguous_transcriber	Bio.Transcribe-module.html#ambiguous_transcriber
Bio.Transcribe.__warningregistry__	Bio.Transcribe-module.html#__warningregistry__
Bio.Transcribe.__package__	Bio.Transcribe-module.html#__package__
Bio.Transcribe.unambiguous_transcriber	Bio.Transcribe-module.html#unambiguous_transcriber
Bio.Transcribe.generic_transcriber	Bio.Transcribe-module.html#generic_transcriber
Bio.Translate	Bio.Translate-module.html
Bio.Translate.value	Bio.Translate-module.html#value
Bio.Translate.ambiguous_rna_by_name	Bio.Translate-module.html#ambiguous_rna_by_name
Bio.Translate.unambiguous_dna_by_id	Bio.Translate-module.html#unambiguous_dna_by_id
Bio.Translate.__warningregistry__	Bio.Translate-module.html#__warningregistry__
Bio.Translate.unambiguous_rna_by_name	Bio.Translate-module.html#unambiguous_rna_by_name
Bio.Translate.unambiguous_rna_by_id	Bio.Translate-module.html#unambiguous_rna_by_id
Bio.Translate.__package__	Bio.Translate-module.html#__package__
Bio.Translate.key	Bio.Translate-module.html#key
Bio.Translate.ambiguous_rna_by_id	Bio.Translate-module.html#ambiguous_rna_by_id
Bio.Translate.unambiguous_dna_by_name	Bio.Translate-module.html#unambiguous_dna_by_name
Bio.Translate.ambiguous_dna_by_name	Bio.Translate-module.html#ambiguous_dna_by_name
Bio.Translate.ambiguous_dna_by_id	Bio.Translate-module.html#ambiguous_dna_by_id
Bio.UniGene	Bio.UniGene-module.html
Bio.UniGene.UG_INDENT	Bio.UniGene-module.html#UG_INDENT
Bio.UniGene.__package__	Bio.UniGene-module.html#__package__
Bio.UniGene.StringTypes	Bio.UniGene-module.html#StringTypes
Bio.UniGene.read	Bio.UniGene-module.html#read
Bio.UniGene.xml_support	Bio.UniGene-module.html#xml_support
Bio.UniGene.parse	Bio.UniGene-module.html#parse
Bio.UniGene._read	Bio.UniGene-module.html#_read
Bio.WWW	Bio.WWW-module.html
Bio.WWW.__warningregistry__	Bio.WWW-module.html#__warningregistry__
Bio.WWW.__package__	Bio.WWW-module.html#__package__
Bio.Wise	Bio.Wise-module.html
Bio.Wise.main	Bio.Wise-module.html#main
Bio.Wise._test	Bio.Wise-module.html#_test
Bio.Wise._build_align_cmdline	Bio.Wise-module.html#_build_align_cmdline
Bio.Wise.__package__	Bio.Wise-module.html#__package__
Bio.Wise.all_pairs	Bio.Wise-module.html#all_pairs
Bio.Wise.align	Bio.Wise-module.html#align
Bio.Wise.dnal	Bio.Wise.dnal-module.html
Bio.Wise.dnal._re_alb_line2coords	Bio.Wise.dnal-module.html#_re_alb_line2coords
Bio.Wise.dnal._test	Bio.Wise.dnal-module.html#_test
Bio.Wise.dnal._SCORE_GAP_EXTENSION	Bio.Wise.dnal-module.html#_SCORE_GAP_EXTENSION
Bio.Wise.dnal._alb_line2coords	Bio.Wise.dnal-module.html#_alb_line2coords
Bio.Wise.dnal._fgrep_count	Bio.Wise.dnal-module.html#_fgrep_count
Bio.Wise.dnal._CMDLINE_DNAL	Bio.Wise.dnal-module.html#_CMDLINE_DNAL
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Bio.Wise.dnal.main	Bio.Wise.dnal-module.html#main
Bio.Wise.dnal._get_coords	Bio.Wise.dnal-module.html#_get_coords
Bio.Wise.dnal._SCORE_MISMATCH	Bio.Wise.dnal-module.html#_SCORE_MISMATCH
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Bio.Wise.dnal._build_dnal_cmdline	Bio.Wise.dnal-module.html#_build_dnal_cmdline
Bio.Wise.dnal._SCORE_MATCH	Bio.Wise.dnal-module.html#_SCORE_MATCH
Bio.Wise.dnal.align	Bio.Wise.dnal-module.html#align
Bio.Wise.dnal._SCORE_GAP_START	Bio.Wise.dnal-module.html#_SCORE_GAP_START
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Bio.Wise.psw	Bio.Wise.psw-module.html
Bio.Wise.psw.main	Bio.Wise.psw-module.html#main
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Bio.Wise.psw._OPTION_SCORES	Bio.Wise.psw-module.html#_OPTION_SCORES
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Bio.Wise.psw.parse	Bio.Wise.psw-module.html#parse
Bio.Wise.psw._CMDLINE_PSW	Bio.Wise.psw-module.html#_CMDLINE_PSW
Bio.Wise.psw._re_unit	Bio.Wise.psw-module.html#_re_unit
Bio.Wise.psw._OPTION_GAP_EXTENSION	Bio.Wise.psw-module.html#_OPTION_GAP_EXTENSION
Bio.Wise.psw.parse_line	Bio.Wise.psw-module.html#parse_line
Bio.Wise.psw.align	Bio.Wise.psw-module.html#align
Bio.distance	Bio.distance-module.html
Bio.distance.FLOATING_POINT_SUPPORT	Bio.distance-module.html#FLOATING_POINT_SUPPORT
Bio.distance.True_	Bio.distance-module.html#True_
Bio.distance.cosh	Bio.distance-module.html#cosh
Bio.distance.FPE_OVERFLOW	Bio.distance-module.html#FPE_OVERFLOW
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Bio.listfns.take	Bio.listfns-module.html#take
Bio.mathfns	Bio.mathfns-module.html
Bio.mathfns.intd	Bio.mathfns-module.html#intd
Bio.mathfns.LOG2	Bio.mathfns-module.html#LOG2
Bio.mathfns.__warningregistry__	Bio.mathfns-module.html#__warningregistry__
Bio.mathfns.safe_log	Bio.mathfns-module.html#safe_log
Bio.mathfns.fcmp	Bio.mathfns-module.html#fcmp
Bio.mathfns.__package__	Bio.mathfns-module.html#__package__
Bio.mathfns.safe_log2	Bio.mathfns-module.html#safe_log2
Bio.mathfns.safe_exp	Bio.mathfns-module.html#safe_exp
Bio.pairwise2	Bio.pairwise2-module.html
Bio.pairwise2._find_global_start	Bio.pairwise2-module.html#_find_global_start
Bio.pairwise2.calc_affine_penalty	Bio.pairwise2-module.html#calc_affine_penalty
Bio.pairwise2._lpad_until_equal	Bio.pairwise2-module.html#_lpad_until_equal
Bio.pairwise2.rint	Bio.pairwise2-module.html#rint
Bio.pairwise2._pad	Bio.pairwise2-module.html#_pad
Bio.pairwise2._pad_until_equal	Bio.pairwise2-module.html#_pad_until_equal
Bio.pairwise2._find_local_start	Bio.pairwise2-module.html#_find_local_start
Bio.pairwise2.this_module	Bio.pairwise2-module.html#this_module
Bio.pairwise2.MAX_ALIGNMENTS	Bio.pairwise2-module.html#MAX_ALIGNMENTS
Bio.pairwise2._find_start	Bio.pairwise2-module.html#_find_start
Bio.pairwise2._make_score_matrix_fast	Bio.pairwise2-module.html#_make_score_matrix_fast
Bio.pairwise2.__package__	Bio.pairwise2-module.html#__package__
Bio.pairwise2.print_matrix	Bio.pairwise2-module.html#print_matrix
Bio.pairwise2._recover_alignments	Bio.pairwise2-module.html#_recover_alignments
Bio.pairwise2._make_score_matrix_generic	Bio.pairwise2-module.html#_make_score_matrix_generic
Bio.pairwise2._clean_alignments	Bio.pairwise2-module.html#_clean_alignments
Bio.pairwise2._lpad	Bio.pairwise2-module.html#_lpad
Bio.pairwise2._PRECISION	Bio.pairwise2-module.html#_PRECISION
Bio.pairwise2.format_alignment	Bio.pairwise2-module.html#format_alignment
Bio.pairwise2.align	Bio.pairwise2-module.html#align
Bio.pairwise2._align	Bio.pairwise2-module.html#_align
Bio.stringfns	Bio.stringfns-module.html
Bio.stringfns.__warningregistry__	Bio.stringfns-module.html#__warningregistry__
Bio.stringfns.splitany	Bio.stringfns-module.html#splitany
Bio.stringfns.__package__	Bio.stringfns-module.html#__package__
Bio.stringfns.find_anychar	Bio.stringfns-module.html#find_anychar
Bio.stringfns.rfind_anychar	Bio.stringfns-module.html#rfind_anychar
Bio.triefind	Bio.triefind-module.html
Bio.triefind.match_all	Bio.triefind-module.html#match_all
Bio.triefind.DEFAULT_BOUNDARY_CHARS	Bio.triefind-module.html#DEFAULT_BOUNDARY_CHARS
Bio.triefind.find	Bio.triefind-module.html#find
Bio.triefind.__package__	Bio.triefind-module.html#__package__
Bio.triefind.find_words	Bio.triefind-module.html#find_words
Bio.triefind.match	Bio.triefind-module.html#match
Bio.utils	Bio.utils-module.html
Bio.utils.ungap	Bio.utils-module.html#ungap
Bio.utils.transcribe	Bio.utils-module.html#transcribe
Bio.utils.count_monomers	Bio.utils-module.html#count_monomers
Bio.utils.total_weight_range	Bio.utils-module.html#total_weight_range
Bio.utils.back_translate	Bio.utils-module.html#back_translate
Bio.utils.back_transcribe	Bio.utils-module.html#back_transcribe
Bio.utils.__package__	Bio.utils-module.html#__package__
Bio.utils.translate_to_stop	Bio.utils-module.html#translate_to_stop
Bio.utils.translate	Bio.utils-module.html#translate
Bio.utils.total_weight	Bio.utils-module.html#total_weight
Bio.utils.reduce_sequence	Bio.utils-module.html#reduce_sequence
Bio.utils.verify_alphabet	Bio.utils-module.html#verify_alphabet
Bio.utils.percent_monomers	Bio.utils-module.html#percent_monomers
Bio.utils.sum_2ple	Bio.utils-module.html#sum_2ple
Bio.utils.sum	Bio.utils-module.html#sum
BioSQL	BioSQL-module.html
BioSQL.__package__	BioSQL-module.html#__package__
BioSQL.BioSeq	BioSQL.BioSeq-module.html
BioSQL.BioSeq._retrieve_seq	BioSQL.BioSeq-module.html#_retrieve_seq
BioSQL.BioSeq._retrieve_reference	BioSQL.BioSeq-module.html#_retrieve_reference
BioSQL.BioSeq._retrieve_taxon	BioSQL.BioSeq-module.html#_retrieve_taxon
BioSQL.BioSeq._retrieve_comment	BioSQL.BioSeq-module.html#_retrieve_comment
BioSQL.BioSeq._retrieve_features	BioSQL.BioSeq-module.html#_retrieve_features
BioSQL.BioSeq._retrieve_location_qualifier_value	BioSQL.BioSeq-module.html#_retrieve_location_qualifier_value
BioSQL.BioSeq.__package__	BioSQL.BioSeq-module.html#__package__
BioSQL.BioSeq._retrieve_annotations	BioSQL.BioSeq-module.html#_retrieve_annotations
BioSQL.BioSeq._retrieve_qualifier_value	BioSQL.BioSeq-module.html#_retrieve_qualifier_value
BioSQL.BioSeq._retrieve_dbxrefs	BioSQL.BioSeq-module.html#_retrieve_dbxrefs
BioSQL.BioSeqDatabase	BioSQL.BioSeqDatabase-module.html
BioSQL.BioSeqDatabase._allowed_lookups	BioSQL.BioSeqDatabase-module.html#_allowed_lookups
BioSQL.BioSeqDatabase.open_database	BioSQL.BioSeqDatabase-module.html#open_database
BioSQL.BioSeqDatabase.__package__	BioSQL.BioSeqDatabase-module.html#__package__
BioSQL.BioSeqDatabase._POSTGRES_RULES_PRESENT	BioSQL.BioSeqDatabase-module.html#_POSTGRES_RULES_PRESENT
BioSQL.DBUtils	BioSQL.DBUtils-module.html
BioSQL.DBUtils.get_dbutils	BioSQL.DBUtils-module.html#get_dbutils
BioSQL.DBUtils._dbutils	BioSQL.DBUtils-module.html#_dbutils
BioSQL.DBUtils.__package__	BioSQL.DBUtils-module.html#__package__
BioSQL.Loader	BioSQL.Loader-module.html
BioSQL.Loader.crc64	Bio.SeqUtils.CheckSum-module.html#crc64
BioSQL.Loader.__package__	BioSQL.Loader-module.html#__package__
Bio.Affy.CelFile.CelConsumer	Bio.Affy.CelFile.CelConsumer-class.html
Bio.Affy.CelFile.CelConsumer.Rows	Bio.Affy.CelFile.CelConsumer-class.html#Rows
Bio.Affy.CelFile.CelConsumer.Cols	Bio.Affy.CelFile.CelConsumer-class.html#Cols
Bio.ParserSupport.AbstractConsumer.__getattr__	Bio.ParserSupport.AbstractConsumer-class.html#__getattr__
Bio.Affy.CelFile.CelConsumer.StartIntensity	Bio.Affy.CelFile.CelConsumer-class.html#StartIntensity
Bio.ParserSupport.AbstractConsumer._unhandled	Bio.ParserSupport.AbstractConsumer-class.html#_unhandled
Bio.ParserSupport.AbstractConsumer._unhandled_section	Bio.ParserSupport.AbstractConsumer-class.html#_unhandled_section
Bio.Affy.CelFile.CelConsumer.ReadIntensity	Bio.Affy.CelFile.CelConsumer-class.html#ReadIntensity
Bio.Affy.CelFile.CelConsumer.__init__	Bio.Affy.CelFile.CelConsumer-class.html#__init__
Bio.Affy.CelFile.CelParser	Bio.Affy.CelFile.CelParser-class.html
Bio.Affy.CelFile.CelParser.parse	Bio.Affy.CelFile.CelParser-class.html#parse
Bio.Affy.CelFile.CelParser.__call__	Bio.Affy.CelFile.CelParser-class.html#__call__
Bio.Affy.CelFile.CelParser.__init__	Bio.Affy.CelFile.CelParser-class.html#__init__
Bio.Affy.CelFile.CelRecord	Bio.Affy.CelFile.CelRecord-class.html
Bio.Affy.CelFile.CelRecord.stdevs	Bio.Affy.CelFile.CelRecord-class.html#stdevs
Bio.Affy.CelFile.CelRecord.ncols	Bio.Affy.CelFile.CelRecord-class.html#ncols
Bio.Affy.CelFile.CelRecord.npix	Bio.Affy.CelFile.CelRecord-class.html#npix
Bio.Affy.CelFile.CelRecord.nrows	Bio.Affy.CelFile.CelRecord-class.html#nrows
Bio.Affy.CelFile.CelRecord.intensities	Bio.Affy.CelFile.CelRecord-class.html#intensities
Bio.Affy.CelFile.CelRecord.__init__	Bio.Affy.CelFile.CelRecord-class.html#__init__
Bio.Affy.CelFile.CelRecord.size	Bio.Affy.CelFile.CelRecord-class.html#size
Bio.Affy.CelFile.CelScanner	Bio.Affy.CelFile.CelScanner-class.html
Bio.Affy.CelFile.CelScanner.feed	Bio.Affy.CelFile.CelScanner-class.html#feed
Bio.Affy.CelFile.Record	Bio.Affy.CelFile.Record-class.html
Bio.Affy.CelFile.Record.__init__	Bio.Affy.CelFile.Record-class.html#__init__
Bio.Align.AlignInfo.PSSM	Bio.Align.AlignInfo.PSSM-class.html
Bio.Align.AlignInfo.PSSM.get_residue	Bio.Align.AlignInfo.PSSM-class.html#get_residue
Bio.Align.AlignInfo.PSSM.__str__	Bio.Align.AlignInfo.PSSM-class.html#__str__
Bio.Align.AlignInfo.PSSM.__init__	Bio.Align.AlignInfo.PSSM-class.html#__init__
Bio.Align.AlignInfo.PSSM.__getitem__	Bio.Align.AlignInfo.PSSM-class.html#__getitem__
Bio.Align.AlignInfo.SummaryInfo	Bio.Align.AlignInfo.SummaryInfo-class.html
Bio.Align.AlignInfo.SummaryInfo._get_base_letters	Bio.Align.AlignInfo.SummaryInfo-class.html#_get_base_letters
Bio.Align.AlignInfo.SummaryInfo.dumb_consensus	Bio.Align.AlignInfo.SummaryInfo-class.html#dumb_consensus
Bio.Align.AlignInfo.SummaryInfo._pair_replacement	Bio.Align.AlignInfo.SummaryInfo-class.html#_pair_replacement
Bio.Align.AlignInfo.SummaryInfo._guess_consensus_alphabet	Bio.Align.AlignInfo.SummaryInfo-class.html#_guess_consensus_alphabet
Bio.Align.AlignInfo.SummaryInfo.get_column	Bio.Align.AlignInfo.SummaryInfo-class.html#get_column
Bio.Align.AlignInfo.SummaryInfo._get_letter_freqs	Bio.Align.AlignInfo.SummaryInfo-class.html#_get_letter_freqs
Bio.Align.AlignInfo.SummaryInfo.information_content	Bio.Align.AlignInfo.SummaryInfo-class.html#information_content
Bio.Align.AlignInfo.SummaryInfo.replacement_dictionary	Bio.Align.AlignInfo.SummaryInfo-class.html#replacement_dictionary
Bio.Align.AlignInfo.SummaryInfo._get_column_info_content	Bio.Align.AlignInfo.SummaryInfo-class.html#_get_column_info_content
Bio.Align.AlignInfo.SummaryInfo.gap_consensus	Bio.Align.AlignInfo.SummaryInfo-class.html#gap_consensus
Bio.Align.AlignInfo.SummaryInfo._get_all_letters	Bio.Align.AlignInfo.SummaryInfo-class.html#_get_all_letters
Bio.Align.AlignInfo.SummaryInfo.pos_specific_score_matrix	Bio.Align.AlignInfo.SummaryInfo-class.html#pos_specific_score_matrix
Bio.Align.AlignInfo.SummaryInfo.__init__	Bio.Align.AlignInfo.SummaryInfo-class.html#__init__
Bio.Align.AlignInfo.SummaryInfo._get_base_replacements	Bio.Align.AlignInfo.SummaryInfo-class.html#_get_base_replacements
Bio.Align.Applications._Clustalw.ClustalwCommandline	Bio.Align.Applications._Clustalw.ClustalwCommandline-class.html
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Align.Applications._Clustalw.ClustalwCommandline.__init__	Bio.Align.Applications._Clustalw.ClustalwCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Align.Applications._Dialign.DialignCommandline	Bio.Align.Applications._Dialign.DialignCommandline-class.html
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Align.Applications._Dialign.DialignCommandline.__init__	Bio.Align.Applications._Dialign.DialignCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Align.Applications._Mafft.MafftCommandline	Bio.Align.Applications._Mafft.MafftCommandline-class.html
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Align.Applications._Mafft.MafftCommandline.__init__	Bio.Align.Applications._Mafft.MafftCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Align.Applications._Muscle.MuscleCommandline	Bio.Align.Applications._Muscle.MuscleCommandline-class.html
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Align.Applications._Muscle.MuscleCommandline.__init__	Bio.Align.Applications._Muscle.MuscleCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Align.Applications._Prank.PrankCommandline	Bio.Align.Applications._Prank.PrankCommandline-class.html
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Align.Applications._Prank.PrankCommandline.__init__	Bio.Align.Applications._Prank.PrankCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Align.Applications._Probcons.ProbconsCommandline	Bio.Align.Applications._Probcons.ProbconsCommandline-class.html
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Align.Applications._Probcons.ProbconsCommandline.__init__	Bio.Align.Applications._Probcons.ProbconsCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Align.Applications._TCoffee.TCoffeeCommandline	Bio.Align.Applications._TCoffee.TCoffeeCommandline-class.html
Bio.Align.Applications._TCoffee.TCoffeeCommandline.SEQ_TYPES	Bio.Align.Applications._TCoffee.TCoffeeCommandline-class.html#SEQ_TYPES
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Align.Applications._TCoffee.TCoffeeCommandline.__init__	Bio.Align.Applications._TCoffee.TCoffeeCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Align.FormatConvert.FormatConverter	Bio.Align.FormatConvert.FormatConverter-class.html
Bio.Align.FormatConvert.FormatConverter.to_clustal	Bio.Align.FormatConvert.FormatConverter-class.html#to_clustal
Bio.Align.FormatConvert.FormatConverter.to_fasta	Bio.Align.FormatConvert.FormatConverter-class.html#to_fasta
Bio.Align.FormatConvert.FormatConverter._get_base_info	Bio.Align.FormatConvert.FormatConverter-class.html#_get_base_info
Bio.Align.FormatConvert.FormatConverter.__init__	Bio.Align.FormatConvert.FormatConverter-class.html#__init__
Bio.Align.Generic.Alignment	Bio.Align.Generic.Alignment-class.html
Bio.Align.Generic.Alignment.get_column	Bio.Align.Generic.Alignment-class.html#get_column
Bio.Align.Generic.Alignment.__getitem__	Bio.Align.Generic.Alignment-class.html#__getitem__
Bio.Align.Generic.Alignment.format	Bio.Align.Generic.Alignment-class.html#format
Bio.Align.Generic.Alignment.get_alignment_length	Bio.Align.Generic.Alignment-class.html#get_alignment_length
Bio.Align.Generic.Alignment.__str__	Bio.Align.Generic.Alignment-class.html#__str__
Bio.Align.Generic.Alignment.get_all_seqs	Bio.Align.Generic.Alignment-class.html#get_all_seqs
Bio.Align.Generic.Alignment.__format__	Bio.Align.Generic.Alignment-class.html#__format__
Bio.Align.Generic.Alignment.add_sequence	Bio.Align.Generic.Alignment-class.html#add_sequence
Bio.Align.Generic.Alignment.__iter__	Bio.Align.Generic.Alignment-class.html#__iter__
Bio.Align.Generic.Alignment.get_seq_by_num	Bio.Align.Generic.Alignment-class.html#get_seq_by_num
Bio.Align.Generic.Alignment._str_line	Bio.Align.Generic.Alignment-class.html#_str_line
Bio.Align.Generic.Alignment.__repr__	Bio.Align.Generic.Alignment-class.html#__repr__
Bio.Align.Generic.Alignment.__init__	Bio.Align.Generic.Alignment-class.html#__init__
Bio.Align.Generic.Alignment.__len__	Bio.Align.Generic.Alignment-class.html#__len__
Bio.AlignAce.Applications.AlignAceCommandline	Bio.AlignAce.Applications.AlignAceCommandline-class.html
Bio.AlignAce.Applications.AlignAceCommandline.run	Bio.AlignAce.Applications.AlignAceCommandline-class.html#run
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.AlignAce.Applications.AlignAceCommandline.__init__	Bio.AlignAce.Applications.AlignAceCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.AlignAce.Applications.CompareAceCommandline	Bio.AlignAce.Applications.CompareAceCommandline-class.html
Bio.AlignAce.Applications.CompareAceCommandline.run	Bio.AlignAce.Applications.CompareAceCommandline-class.html#run
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.AlignAce.Applications.CompareAceCommandline.__init__	Bio.AlignAce.Applications.CompareAceCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.AlignAce.Motif.Motif	Bio.AlignAce.Motif.Motif-class.html
Bio.AlignAce.Motif.Motif.to_fasta	Bio.AlignAce.Motif.Motif-class.html#to_fasta
Bio.AlignAce.Motif.Motif.__str__	Bio.AlignAce.Motif.Motif-class.html#__str__
Bio.AlignAce.Motif.Motif.search_pwm	Bio.AlignAce.Motif.Motif-class.html#search_pwm
Bio.AlignAce.Motif.Motif._check_alphabet	Bio.AlignAce.Motif.Motif-class.html#_check_alphabet
Bio.AlignAce.Motif.Motif.add_instance	Bio.AlignAce.Motif.Motif-class.html#add_instance
Bio.AlignAce.Motif.Motif.write	Bio.AlignAce.Motif.Motif-class.html#write
Bio.AlignAce.Motif.Motif.weblogo	Bio.AlignAce.Motif.Motif-class.html#weblogo
Bio.AlignAce.Motif.Motif.__init__	Bio.AlignAce.Motif.Motif-class.html#__init__
Bio.AlignAce.Motif.Motif.sim	Bio.AlignAce.Motif.Motif-class.html#sim
Bio.AlignAce.Motif.Motif.search_instances	Bio.AlignAce.Motif.Motif-class.html#search_instances
Bio.AlignAce.Motif.Motif.set_mask	Bio.AlignAce.Motif.Motif-class.html#set_mask
Bio.AlignAce.Motif.Motif.read	Bio.AlignAce.Motif.Motif-class.html#read
Bio.AlignAce.Motif.Motif._check_length	Bio.AlignAce.Motif.Motif-class.html#_check_length
Bio.AlignAce.Motif.Motif.pwm	Bio.AlignAce.Motif.Motif-class.html#pwm
Bio.AlignAce.Motif.Motif.score_hit	Bio.AlignAce.Motif.Motif-class.html#score_hit
Bio.AlignAce.Parser.AlignAceConsumer	Bio.AlignAce.Parser.AlignAceConsumer-class.html
Bio.AlignAce.Parser.AlignAceConsumer.motif	Bio.AlignAce.Parser.AlignAceConsumer-class.html#motif
Bio.AlignAce.Parser.AlignAceConsumer.motif_mask	Bio.AlignAce.Parser.AlignAceConsumer-class.html#motif_mask
Bio.AlignAce.Parser.AlignAceConsumer.parameters	Bio.AlignAce.Parser.AlignAceConsumer-class.html#parameters
Bio.AlignAce.Parser.AlignAceConsumer.sequence	Bio.AlignAce.Parser.AlignAceConsumer-class.html#sequence
Bio.AlignAce.Parser.AlignAceConsumer.motif_hit	Bio.AlignAce.Parser.AlignAceConsumer-class.html#motif_hit
Bio.AlignAce.Parser.AlignAceConsumer.command_line	Bio.AlignAce.Parser.AlignAceConsumer-class.html#command_line
Bio.AlignAce.Parser.AlignAceConsumer.motif_score	Bio.AlignAce.Parser.AlignAceConsumer-class.html#motif_score
Bio.AlignAce.Parser.AlignAceConsumer.version	Bio.AlignAce.Parser.AlignAceConsumer-class.html#version
Bio.AlignAce.Parser.AlignAceConsumer.sequences	Bio.AlignAce.Parser.AlignAceConsumer-class.html#sequences
Bio.AlignAce.Parser.AlignAceConsumer.noevent	Bio.AlignAce.Parser.AlignAceConsumer-class.html#noevent
Bio.AlignAce.Parser.AlignAceConsumer.parameter	Bio.AlignAce.Parser.AlignAceConsumer-class.html#parameter
Bio.AlignAce.Parser.AlignAceConsumer.__init__	Bio.AlignAce.Parser.AlignAceConsumer-class.html#__init__
Bio.AlignAce.Parser.AlignAceParser	Bio.AlignAce.Parser.AlignAceParser-class.html
Bio.AlignAce.Parser.AlignAceParser.parse	Bio.AlignAce.Parser.AlignAceParser-class.html#parse
Bio.ParserSupport.AbstractParser.parse_file	Bio.ParserSupport.AbstractParser-class.html#parse_file
Bio.ParserSupport.AbstractParser.parse_str	Bio.ParserSupport.AbstractParser-class.html#parse_str
Bio.AlignAce.Parser.AlignAceParser.__init__	Bio.AlignAce.Parser.AlignAceParser-class.html#__init__
Bio.AlignAce.Parser.CompareAceConsumer	Bio.AlignAce.Parser.CompareAceConsumer-class.html
Bio.AlignAce.Parser.CompareAceConsumer.motif_score	Bio.AlignAce.Parser.CompareAceConsumer-class.html#motif_score
Bio.AlignAce.Parser.CompareAceConsumer.__init__	Bio.AlignAce.Parser.CompareAceConsumer-class.html#__init__
Bio.AlignAce.Parser.CompareAceParser	Bio.AlignAce.Parser.CompareAceParser-class.html
Bio.AlignAce.Parser.CompareAceParser.parse	Bio.AlignAce.Parser.CompareAceParser-class.html#parse
Bio.ParserSupport.AbstractParser.parse_file	Bio.ParserSupport.AbstractParser-class.html#parse_file
Bio.ParserSupport.AbstractParser.parse_str	Bio.ParserSupport.AbstractParser-class.html#parse_str
Bio.AlignAce.Parser.CompareAceParser.__init__	Bio.AlignAce.Parser.CompareAceParser-class.html#__init__
Bio.AlignAce.Scanner.AlignAceScanner	Bio.AlignAce.Scanner.AlignAceScanner-class.html
Bio.AlignAce.Scanner.AlignAceScanner.feed	Bio.AlignAce.Scanner.AlignAceScanner-class.html#feed
Bio.AlignAce.Scanner.CompareAceScanner	Bio.AlignAce.Scanner.CompareAceScanner-class.html
Bio.AlignAce.Scanner.CompareAceScanner.feed	Bio.AlignAce.Scanner.CompareAceScanner-class.html#feed
Bio.AlignIO.ClustalIO.ClustalIterator	Bio.AlignIO.ClustalIO.ClustalIterator-class.html
Bio.AlignIO.Interfaces.AlignmentIterator.__iter__	Bio.AlignIO.Interfaces.AlignmentIterator-class.html#__iter__
Bio.AlignIO.Interfaces.AlignmentIterator.__init__	Bio.AlignIO.Interfaces.AlignmentIterator-class.html#__init__
Bio.AlignIO.ClustalIO.ClustalIterator.next	Bio.AlignIO.ClustalIO.ClustalIterator-class.html#next
Bio.AlignIO.ClustalIO.ClustalWriter	Bio.AlignIO.ClustalIO.ClustalWriter-class.html
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.write_footer	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_footer
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.write_file	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_file
Bio.AlignIO.Interfaces.AlignmentWriter.clean	Bio.AlignIO.Interfaces.AlignmentWriter-class.html#clean
Bio.AlignIO.ClustalIO.ClustalWriter.write_alignment	Bio.AlignIO.ClustalIO.ClustalWriter-class.html#write_alignment
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.write_header	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_header
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.__init__	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#__init__
Bio.AlignIO.EmbossIO.EmbossIterator	Bio.AlignIO.EmbossIO.EmbossIterator-class.html
Bio.AlignIO.Interfaces.AlignmentIterator.__iter__	Bio.AlignIO.Interfaces.AlignmentIterator-class.html#__iter__
Bio.AlignIO.Interfaces.AlignmentIterator.__init__	Bio.AlignIO.Interfaces.AlignmentIterator-class.html#__init__
Bio.AlignIO.EmbossIO.EmbossIterator.next	Bio.AlignIO.EmbossIO.EmbossIterator-class.html#next
Bio.AlignIO.EmbossIO.EmbossWriter	Bio.AlignIO.EmbossIO.EmbossWriter-class.html
Bio.AlignIO.EmbossIO.EmbossWriter.write_footer	Bio.AlignIO.EmbossIO.EmbossWriter-class.html#write_footer
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.write_file	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_file
Bio.AlignIO.Interfaces.AlignmentWriter.clean	Bio.AlignIO.Interfaces.AlignmentWriter-class.html#clean
Bio.AlignIO.EmbossIO.EmbossWriter.write_alignment	Bio.AlignIO.EmbossIO.EmbossWriter-class.html#write_alignment
Bio.AlignIO.EmbossIO.EmbossWriter.write_header	Bio.AlignIO.EmbossIO.EmbossWriter-class.html#write_header
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.__init__	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#__init__
Bio.AlignIO.FastaIO.FastaM10Iterator	Bio.AlignIO.FastaIO.FastaM10Iterator-class.html
Bio.AlignIO.FastaIO.FastaM10Iterator._parse_tag_section	Bio.AlignIO.FastaIO.FastaM10Iterator-class.html#_parse_tag_section
Bio.AlignIO.FastaIO.FastaM10Iterator.next	Bio.AlignIO.FastaIO.FastaM10Iterator-class.html#next
Bio.AlignIO.FastaIO.FastaM10Iterator._skip_file_header	Bio.AlignIO.FastaIO.FastaM10Iterator-class.html#_skip_file_header
Bio.AlignIO.Interfaces.AlignmentIterator.__iter__	Bio.AlignIO.Interfaces.AlignmentIterator-class.html#__iter__
Bio.AlignIO.FastaIO.FastaM10Iterator._extract_alignment_region	Bio.AlignIO.FastaIO.FastaM10Iterator-class.html#_extract_alignment_region
Bio.AlignIO.FastaIO.FastaM10Iterator._parse_query_header	Bio.AlignIO.FastaIO.FastaM10Iterator-class.html#_parse_query_header
Bio.AlignIO.Interfaces.AlignmentIterator.__init__	Bio.AlignIO.Interfaces.AlignmentIterator-class.html#__init__
Bio.AlignIO.Interfaces.AlignmentIterator	Bio.AlignIO.Interfaces.AlignmentIterator-class.html
Bio.AlignIO.Interfaces.AlignmentIterator.__iter__	Bio.AlignIO.Interfaces.AlignmentIterator-class.html#__iter__
Bio.AlignIO.Interfaces.AlignmentIterator.__init__	Bio.AlignIO.Interfaces.AlignmentIterator-class.html#__init__
Bio.AlignIO.Interfaces.AlignmentIterator.next	Bio.AlignIO.Interfaces.AlignmentIterator-class.html#next
Bio.AlignIO.Interfaces.AlignmentWriter	Bio.AlignIO.Interfaces.AlignmentWriter-class.html
Bio.AlignIO.Interfaces.AlignmentWriter.write_file	Bio.AlignIO.Interfaces.AlignmentWriter-class.html#write_file
Bio.AlignIO.Interfaces.AlignmentWriter.__init__	Bio.AlignIO.Interfaces.AlignmentWriter-class.html#__init__
Bio.AlignIO.Interfaces.AlignmentWriter.clean	Bio.AlignIO.Interfaces.AlignmentWriter-class.html#clean
Bio.AlignIO.Interfaces.SequentialAlignmentWriter	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.write_footer	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_footer
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.write_file	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_file
Bio.AlignIO.Interfaces.AlignmentWriter.clean	Bio.AlignIO.Interfaces.AlignmentWriter-class.html#clean
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.write_alignment	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_alignment
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.write_header	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_header
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.__init__	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#__init__
Bio.AlignIO.NexusIO.NexusWriter	Bio.AlignIO.NexusIO.NexusWriter-class.html
Bio.AlignIO.NexusIO.NexusWriter.write_file	Bio.AlignIO.NexusIO.NexusWriter-class.html#write_file
Bio.AlignIO.NexusIO.NexusWriter.write_alignment	Bio.AlignIO.NexusIO.NexusWriter-class.html#write_alignment
Bio.AlignIO.Interfaces.AlignmentWriter.clean	Bio.AlignIO.Interfaces.AlignmentWriter-class.html#clean
Bio.AlignIO.NexusIO.NexusWriter._classify_alphabet_for_nexus	Bio.AlignIO.NexusIO.NexusWriter-class.html#_classify_alphabet_for_nexus
Bio.AlignIO.Interfaces.AlignmentWriter.__init__	Bio.AlignIO.Interfaces.AlignmentWriter-class.html#__init__
Bio.AlignIO.PhylipIO.PhylipIterator	Bio.AlignIO.PhylipIO.PhylipIterator-class.html
Bio.AlignIO.Interfaces.AlignmentIterator.__iter__	Bio.AlignIO.Interfaces.AlignmentIterator-class.html#__iter__
Bio.AlignIO.PhylipIO.PhylipIterator._is_header	Bio.AlignIO.PhylipIO.PhylipIterator-class.html#_is_header
Bio.AlignIO.Interfaces.AlignmentIterator.__init__	Bio.AlignIO.Interfaces.AlignmentIterator-class.html#__init__
Bio.AlignIO.PhylipIO.PhylipIterator.next	Bio.AlignIO.PhylipIO.PhylipIterator-class.html#next
Bio.AlignIO.PhylipIO.PhylipWriter	Bio.AlignIO.PhylipIO.PhylipWriter-class.html
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.write_footer	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_footer
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.write_file	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_file
Bio.AlignIO.Interfaces.AlignmentWriter.clean	Bio.AlignIO.Interfaces.AlignmentWriter-class.html#clean
Bio.AlignIO.PhylipIO.PhylipWriter.write_alignment	Bio.AlignIO.PhylipIO.PhylipWriter-class.html#write_alignment
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.write_header	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_header
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.__init__	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#__init__
Bio.AlignIO.StockholmIO.StockholmIterator	Bio.AlignIO.StockholmIO.StockholmIterator-class.html
Bio.AlignIO.StockholmIO.StockholmIterator.pfam_gr_mapping	Bio.AlignIO.StockholmIO.StockholmIterator-class.html#pfam_gr_mapping
Bio.AlignIO.StockholmIO.StockholmIterator.next	Bio.AlignIO.StockholmIO.StockholmIterator-class.html#next
Bio.AlignIO.StockholmIO.StockholmIterator.pfam_gs_mapping	Bio.AlignIO.StockholmIO.StockholmIterator-class.html#pfam_gs_mapping
Bio.AlignIO.Interfaces.AlignmentIterator.__iter__	Bio.AlignIO.Interfaces.AlignmentIterator-class.html#__iter__
Bio.AlignIO.StockholmIO.StockholmIterator._get_meta_data	Bio.AlignIO.StockholmIO.StockholmIterator-class.html#_get_meta_data
Bio.AlignIO.StockholmIO.StockholmIterator._populate_meta_data	Bio.AlignIO.StockholmIO.StockholmIterator-class.html#_populate_meta_data
Bio.AlignIO.StockholmIO.StockholmIterator._identifier_split	Bio.AlignIO.StockholmIO.StockholmIterator-class.html#_identifier_split
Bio.AlignIO.Interfaces.AlignmentIterator.__init__	Bio.AlignIO.Interfaces.AlignmentIterator-class.html#__init__
Bio.AlignIO.StockholmIO.StockholmWriter	Bio.AlignIO.StockholmIO.StockholmWriter-class.html
Bio.AlignIO.StockholmIO.StockholmWriter.pfam_gr_mapping	Bio.AlignIO.StockholmIO.StockholmWriter-class.html#pfam_gr_mapping
Bio.AlignIO.StockholmIO.StockholmWriter._write_record	Bio.AlignIO.StockholmIO.StockholmWriter-class.html#_write_record
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.write_footer	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_footer
Bio.AlignIO.StockholmIO.StockholmWriter.pfam_gs_mapping	Bio.AlignIO.StockholmIO.StockholmWriter-class.html#pfam_gs_mapping
Bio.AlignIO.Interfaces.AlignmentWriter.clean	Bio.AlignIO.Interfaces.AlignmentWriter-class.html#clean
Bio.AlignIO.StockholmIO.StockholmWriter.write_alignment	Bio.AlignIO.StockholmIO.StockholmWriter-class.html#write_alignment
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.write_file	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_file
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.write_header	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#write_header
Bio.AlignIO.Interfaces.SequentialAlignmentWriter.__init__	Bio.AlignIO.Interfaces.SequentialAlignmentWriter-class.html#__init__
Bio.Alphabet.Alphabet	Bio.Alphabet.Alphabet-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.Alphabet.letters	Bio.Alphabet.Alphabet-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.Alphabet.size	Bio.Alphabet.Alphabet-class.html#size
Bio.Alphabet.AlphabetEncoder	Bio.Alphabet.AlphabetEncoder-class.html
Bio.Alphabet.AlphabetEncoder.__init__	Bio.Alphabet.AlphabetEncoder-class.html#__init__
Bio.Alphabet.AlphabetEncoder.contains	Bio.Alphabet.AlphabetEncoder-class.html#contains
Bio.Alphabet.AlphabetEncoder.__repr__	Bio.Alphabet.AlphabetEncoder-class.html#__repr__
Bio.Alphabet.AlphabetEncoder.__getattr__	Bio.Alphabet.AlphabetEncoder-class.html#__getattr__
Bio.Alphabet.DNAAlphabet	Bio.Alphabet.DNAAlphabet-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.SingleLetterAlphabet.letters	Bio.Alphabet.SingleLetterAlphabet-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.SingleLetterAlphabet.size	Bio.Alphabet.SingleLetterAlphabet-class.html#size
Bio.Alphabet.Gapped	Bio.Alphabet.Gapped-class.html
Bio.Alphabet.Gapped.contains	Bio.Alphabet.Gapped-class.html#contains
Bio.Alphabet.AlphabetEncoder.__repr__	Bio.Alphabet.AlphabetEncoder-class.html#__repr__
Bio.Alphabet.Gapped.__init__	Bio.Alphabet.Gapped-class.html#__init__
Bio.Alphabet.AlphabetEncoder.__getattr__	Bio.Alphabet.AlphabetEncoder-class.html#__getattr__
Bio.Alphabet.HasStopCodon	Bio.Alphabet.HasStopCodon-class.html
Bio.Alphabet.HasStopCodon.contains	Bio.Alphabet.HasStopCodon-class.html#contains
Bio.Alphabet.AlphabetEncoder.__getattr__	Bio.Alphabet.AlphabetEncoder-class.html#__getattr__
Bio.Alphabet.AlphabetEncoder.__repr__	Bio.Alphabet.AlphabetEncoder-class.html#__repr__
Bio.Alphabet.HasStopCodon.__init__	Bio.Alphabet.HasStopCodon-class.html#__init__
Bio.Alphabet.HasStopCodon.__cmp__	Bio.Alphabet.HasStopCodon-class.html#__cmp__
Bio.Alphabet.IUPAC.ExtendedIUPACDNA	Bio.Alphabet.IUPAC.ExtendedIUPACDNA-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.IUPAC.ExtendedIUPACDNA.letters	Bio.Alphabet.IUPAC.ExtendedIUPACDNA-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.SingleLetterAlphabet.size	Bio.Alphabet.SingleLetterAlphabet-class.html#size
Bio.Alphabet.IUPAC.ExtendedIUPACProtein	Bio.Alphabet.IUPAC.ExtendedIUPACProtein-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.IUPAC.ExtendedIUPACProtein.letters	Bio.Alphabet.IUPAC.ExtendedIUPACProtein-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.SingleLetterAlphabet.size	Bio.Alphabet.SingleLetterAlphabet-class.html#size
Bio.Alphabet.IUPAC.IUPACAmbiguousDNA	Bio.Alphabet.IUPAC.IUPACAmbiguousDNA-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.IUPAC.IUPACAmbiguousDNA.letters	Bio.Alphabet.IUPAC.IUPACAmbiguousDNA-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.SingleLetterAlphabet.size	Bio.Alphabet.SingleLetterAlphabet-class.html#size
Bio.Alphabet.IUPAC.IUPACAmbiguousRNA	Bio.Alphabet.IUPAC.IUPACAmbiguousRNA-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.IUPAC.IUPACAmbiguousRNA.letters	Bio.Alphabet.IUPAC.IUPACAmbiguousRNA-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.SingleLetterAlphabet.size	Bio.Alphabet.SingleLetterAlphabet-class.html#size
Bio.Alphabet.IUPAC.IUPACProtein	Bio.Alphabet.IUPAC.IUPACProtein-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.IUPAC.IUPACProtein.letters	Bio.Alphabet.IUPAC.IUPACProtein-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.SingleLetterAlphabet.size	Bio.Alphabet.SingleLetterAlphabet-class.html#size
Bio.Alphabet.IUPAC.IUPACUnambiguousDNA	Bio.Alphabet.IUPAC.IUPACUnambiguousDNA-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.IUPAC.IUPACUnambiguousDNA.letters	Bio.Alphabet.IUPAC.IUPACUnambiguousDNA-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.SingleLetterAlphabet.size	Bio.Alphabet.SingleLetterAlphabet-class.html#size
Bio.Alphabet.IUPAC.IUPACUnambiguousRNA	Bio.Alphabet.IUPAC.IUPACUnambiguousRNA-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.IUPAC.IUPACUnambiguousRNA.letters	Bio.Alphabet.IUPAC.IUPACUnambiguousRNA-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.SingleLetterAlphabet.size	Bio.Alphabet.SingleLetterAlphabet-class.html#size
Bio.Alphabet.NucleotideAlphabet	Bio.Alphabet.NucleotideAlphabet-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.SingleLetterAlphabet.letters	Bio.Alphabet.SingleLetterAlphabet-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.SingleLetterAlphabet.size	Bio.Alphabet.SingleLetterAlphabet-class.html#size
Bio.Alphabet.ProteinAlphabet	Bio.Alphabet.ProteinAlphabet-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.SingleLetterAlphabet.letters	Bio.Alphabet.SingleLetterAlphabet-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.SingleLetterAlphabet.size	Bio.Alphabet.SingleLetterAlphabet-class.html#size
Bio.Alphabet.RNAAlphabet	Bio.Alphabet.RNAAlphabet-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.SingleLetterAlphabet.letters	Bio.Alphabet.SingleLetterAlphabet-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.SingleLetterAlphabet.size	Bio.Alphabet.SingleLetterAlphabet-class.html#size
Bio.Alphabet.Reduced.HPModel	Bio.Alphabet.Reduced.HPModel-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.Reduced.HPModel.letters	Bio.Alphabet.Reduced.HPModel-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.Reduced.HPModel.size	Bio.Alphabet.Reduced.HPModel-class.html#size
Bio.Alphabet.Reduced.Murphy10	Bio.Alphabet.Reduced.Murphy10-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.Reduced.Murphy10.letters	Bio.Alphabet.Reduced.Murphy10-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.Reduced.Murphy10.size	Bio.Alphabet.Reduced.Murphy10-class.html#size
Bio.Alphabet.Reduced.Murphy15	Bio.Alphabet.Reduced.Murphy15-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.Reduced.Murphy15.letters	Bio.Alphabet.Reduced.Murphy15-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.Reduced.Murphy15.size	Bio.Alphabet.Reduced.Murphy15-class.html#size
Bio.Alphabet.Reduced.Murphy4	Bio.Alphabet.Reduced.Murphy4-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.Reduced.Murphy4.letters	Bio.Alphabet.Reduced.Murphy4-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.Reduced.Murphy4.size	Bio.Alphabet.Reduced.Murphy4-class.html#size
Bio.Alphabet.Reduced.Murphy8	Bio.Alphabet.Reduced.Murphy8-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.Reduced.Murphy8.letters	Bio.Alphabet.Reduced.Murphy8-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.Reduced.Murphy8.size	Bio.Alphabet.Reduced.Murphy8-class.html#size
Bio.Alphabet.Reduced.PC5	Bio.Alphabet.Reduced.PC5-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.Reduced.PC5.letters	Bio.Alphabet.Reduced.PC5-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.Reduced.PC5.size	Bio.Alphabet.Reduced.PC5-class.html#size
Bio.Alphabet.SecondaryStructure	Bio.Alphabet.SecondaryStructure-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.SecondaryStructure.letters	Bio.Alphabet.SecondaryStructure-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.SingleLetterAlphabet.size	Bio.Alphabet.SingleLetterAlphabet-class.html#size
Bio.Alphabet.SingleLetterAlphabet	Bio.Alphabet.SingleLetterAlphabet-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.SingleLetterAlphabet.letters	Bio.Alphabet.SingleLetterAlphabet-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.SingleLetterAlphabet.size	Bio.Alphabet.SingleLetterAlphabet-class.html#size
Bio.Alphabet.ThreeLetterProtein	Bio.Alphabet.ThreeLetterProtein-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.ThreeLetterProtein.letters	Bio.Alphabet.ThreeLetterProtein-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.ThreeLetterProtein.size	Bio.Alphabet.ThreeLetterProtein-class.html#size
Bio.Application.AbstractCommandline	Bio.Application.AbstractCommandline-class.html
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Application.AbstractCommandline.__init__	Bio.Application.AbstractCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Application.ApplicationResult	Bio.Application.ApplicationResult-class.html
Bio.Application.ApplicationResult.get_result	Bio.Application.ApplicationResult-class.html#get_result
Bio.Application.ApplicationResult.__init__	Bio.Application.ApplicationResult-class.html#__init__
Bio.Application.ApplicationResult.available_results	Bio.Application.ApplicationResult-class.html#available_results
Bio.Application._AbstractParameter	Bio.Application._AbstractParameter-class.html
Bio.Application._AbstractParameter.__str__	Bio.Application._AbstractParameter-class.html#__str__
Bio.Application._AbstractParameter.__init__	Bio.Application._AbstractParameter-class.html#__init__
Bio.Application._Argument	Bio.Application._Argument-class.html
Bio.Application._Argument.__str__	Bio.Application._Argument-class.html#__str__
Bio.Application._Argument.__init__	Bio.Application._Argument-class.html#__init__
Bio.Application._Option	Bio.Application._Option-class.html
Bio.Application._Option.__str__	Bio.Application._Option-class.html#__str__
Bio.Application._Option.__init__	Bio.Application._Option-class.html#__init__
Bio.Application._Switch	Bio.Application._Switch-class.html
Bio.Application._Switch.__str__	Bio.Application._Switch-class.html#__str__
Bio.Application._Switch.__init__	Bio.Application._Switch-class.html#__init__
Bio.Blast.Applications.BlastallCommandline	Bio.Blast.Applications.BlastallCommandline-class.html
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Blast.Applications.BlastallCommandline.__init__	Bio.Blast.Applications.BlastallCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Blast.Applications.BlastpgpCommandline	Bio.Blast.Applications.BlastpgpCommandline-class.html
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Blast.Applications.BlastpgpCommandline.__init__	Bio.Blast.Applications.BlastpgpCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Blast.Applications.FastacmdCommandline	Bio.Blast.Applications.FastacmdCommandline-class.html
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Blast.Applications.FastacmdCommandline.__init__	Bio.Blast.Applications.FastacmdCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Blast.Applications.RpsBlastCommandline	Bio.Blast.Applications.RpsBlastCommandline-class.html
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Blast.Applications.RpsBlastCommandline.__init__	Bio.Blast.Applications.RpsBlastCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Blast.Applications._BlastAllOrPgpCommandLine	Bio.Blast.Applications._BlastAllOrPgpCommandLine-class.html
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Blast.Applications._BlastAllOrPgpCommandLine.__init__	Bio.Blast.Applications._BlastAllOrPgpCommandLine-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Blast.Applications._BlastCommandLine	Bio.Blast.Applications._BlastCommandLine-class.html
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Blast.Applications._BlastCommandLine.__init__	Bio.Blast.Applications._BlastCommandLine-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Blast.NCBIStandalone.BlastErrorParser	Bio.Blast.NCBIStandalone.BlastErrorParser-class.html
Bio.Blast.NCBIStandalone.BlastErrorParser.parse	Bio.Blast.NCBIStandalone.BlastErrorParser-class.html#parse
Bio.ParserSupport.AbstractParser.parse_file	Bio.ParserSupport.AbstractParser-class.html#parse_file
Bio.ParserSupport.AbstractParser.parse_str	Bio.ParserSupport.AbstractParser-class.html#parse_str
Bio.Blast.NCBIStandalone.BlastErrorParser.__init__	Bio.Blast.NCBIStandalone.BlastErrorParser-class.html#__init__
Bio.Blast.NCBIStandalone.BlastErrorParser._diagnose_error	Bio.Blast.NCBIStandalone.BlastErrorParser-class.html#_diagnose_error
Bio.Blast.NCBIStandalone.BlastParser	Bio.Blast.NCBIStandalone.BlastParser-class.html
Bio.Blast.NCBIStandalone.BlastParser.parse	Bio.Blast.NCBIStandalone.BlastParser-class.html#parse
Bio.ParserSupport.AbstractParser.parse_file	Bio.ParserSupport.AbstractParser-class.html#parse_file
Bio.ParserSupport.AbstractParser.parse_str	Bio.ParserSupport.AbstractParser-class.html#parse_str
Bio.Blast.NCBIStandalone.BlastParser.__init__	Bio.Blast.NCBIStandalone.BlastParser-class.html#__init__
Bio.Blast.NCBIStandalone.Iterator	Bio.Blast.NCBIStandalone.Iterator-class.html
Bio.Blast.NCBIStandalone.Iterator.__iter__	Bio.Blast.NCBIStandalone.Iterator-class.html#__iter__
Bio.Blast.NCBIStandalone.Iterator.__init__	Bio.Blast.NCBIStandalone.Iterator-class.html#__init__
Bio.Blast.NCBIStandalone.Iterator.next	Bio.Blast.NCBIStandalone.Iterator-class.html#next
Bio.Blast.NCBIStandalone.LowQualityBlastError	Bio.Blast.NCBIStandalone.LowQualityBlastError-class.html
Bio.Blast.NCBIStandalone.PSIBlastParser	Bio.Blast.NCBIStandalone.PSIBlastParser-class.html
Bio.Blast.NCBIStandalone.PSIBlastParser.parse	Bio.Blast.NCBIStandalone.PSIBlastParser-class.html#parse
Bio.ParserSupport.AbstractParser.parse_file	Bio.ParserSupport.AbstractParser-class.html#parse_file
Bio.ParserSupport.AbstractParser.parse_str	Bio.ParserSupport.AbstractParser-class.html#parse_str
Bio.Blast.NCBIStandalone.PSIBlastParser.__init__	Bio.Blast.NCBIStandalone.PSIBlastParser-class.html#__init__
Bio.Blast.NCBIStandalone.ShortQueryBlastError	Bio.Blast.NCBIStandalone.ShortQueryBlastError-class.html
Bio.Blast.NCBIStandalone._AlignmentConsumer	Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html
Bio.Blast.NCBIStandalone._AlignmentConsumer.start_alignment	Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#start_alignment
Bio.Blast.NCBIStandalone._AlignmentConsumer.length	Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#length
Bio.Blast.NCBIStandalone._AlignmentConsumer.multalign	Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#multalign
Bio.Blast.NCBIStandalone._AlignmentConsumer.end_alignment	Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#end_alignment
Bio.Blast.NCBIStandalone._AlignmentConsumer.title	Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#title
Bio.Blast.NCBIStandalone._BlastConsumer	Bio.Blast.NCBIStandalone._BlastConsumer-class.html
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.start_database_report	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#start_database_report
Bio.Blast.NCBIStandalone._BlastConsumer.end_database_report	Bio.Blast.NCBIStandalone._BlastConsumer-class.html#end_database_report
Bio.Blast.NCBIStandalone._ParametersConsumer.num_good_extends	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_good_extends
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.posted_date	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#posted_date
Bio.Blast.NCBIStandalone._HSPConsumer._query_re	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#_query_re
Bio.Blast.NCBIStandalone._HeaderConsumer.reference	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#reference
Bio.Blast.NCBIStandalone._BlastConsumer.start_header	Bio.Blast.NCBIStandalone._BlastConsumer-class.html#start_header
Bio.Blast.NCBIStandalone._HSPConsumer.frame	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#frame
Bio.Blast.NCBIStandalone._ParametersConsumer.start_parameters	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#start_parameters
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.num_sequences_in_database	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#num_sequences_in_database
Bio.Blast.NCBIStandalone._BlastConsumer.end_parameters	Bio.Blast.NCBIStandalone._BlastConsumer-class.html#end_parameters
Bio.Blast.NCBIStandalone._ParametersConsumer.threshold	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#threshold
Bio.Blast.NCBIStandalone._HSPConsumer.query	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#query
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_search_space	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_search_space
Bio.Blast.NCBIStandalone._BlastConsumer.end_alignment	Bio.Blast.NCBIStandalone._BlastConsumer-class.html#end_alignment
Bio.Blast.NCBIStandalone._BlastConsumer.__init__	Bio.Blast.NCBIStandalone._BlastConsumer-class.html#__init__
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.gapped	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#gapped
Bio.Blast.NCBIStandalone._ParametersConsumer.window_size	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#window_size
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_search_space_used	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_search_space_used
Bio.Blast.NCBIStandalone._HSPConsumer.score	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#score
Bio.Blast.NCBIStandalone._ParametersConsumer.hsps_prelim_gapped	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#hsps_prelim_gapped
Bio.Blast.NCBIStandalone._AlignmentConsumer.title	Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#title
Bio.Blast.NCBIStandalone._HSPConsumer.identities	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#identities
Bio.Blast.NCBIStandalone._DescriptionConsumer.model_sequences	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#model_sequences
Bio.Blast.NCBIStandalone._AlignmentConsumer.length	Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#length
Bio.ParserSupport.AbstractConsumer.__getattr__	Bio.ParserSupport.AbstractConsumer-class.html#__getattr__
Bio.Blast.NCBIStandalone._ParametersConsumer.frameshift	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#frameshift
Bio.Blast.NCBIStandalone._ParametersConsumer.gap_x_dropoff_final	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_x_dropoff_final
Bio.Blast.NCBIStandalone._ParametersConsumer.matrix	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#matrix
Bio.Blast.NCBIStandalone._HeaderConsumer.version	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#version
Bio.Blast.NCBIStandalone._HSPConsumer._sbjct_re	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#_sbjct_re
Bio.Blast.NCBIStandalone._ParametersConsumer.num_hits	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_hits
Bio.Blast.NCBIStandalone._DescriptionConsumer.converged	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#converged
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_database_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_database_length
Bio.Blast.NCBIStandalone._ParametersConsumer.hsps_gapped	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#hsps_gapped
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.ka_params	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#ka_params
Bio.Blast.NCBIStandalone._DescriptionConsumer.nonmodel_sequences	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#nonmodel_sequences
Bio.Blast.NCBIStandalone._ParametersConsumer.query_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#query_length
Bio.Blast.NCBIStandalone._BlastConsumer.end_descriptions	Bio.Blast.NCBIStandalone._BlastConsumer-class.html#end_descriptions
Bio.Blast.NCBIStandalone._DescriptionConsumer.description	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#description
Bio.Blast.NCBIStandalone._ParametersConsumer.gap_trigger	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_trigger
Bio.Blast.NCBIStandalone._ParametersConsumer.hsps_no_gap	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#hsps_no_gap
Bio.Blast.NCBIStandalone._HSPConsumer.start_hsp	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#start_hsp
Bio.Blast.NCBIStandalone._ParametersConsumer.gap_x_dropoff	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_x_dropoff
Bio.Blast.NCBIStandalone._AlignmentConsumer.multalign	Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#multalign
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.ka_params_gap	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#ka_params_gap
Bio.Blast.NCBIStandalone._DescriptionConsumer.no_hits	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#no_hits
Bio.Blast.NCBIStandalone._ParametersConsumer.blast_cutoff	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#blast_cutoff
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_query_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_query_length
Bio.ParserSupport.AbstractConsumer._unhandled_section	Bio.ParserSupport.AbstractConsumer-class.html#_unhandled_section
Bio.Blast.NCBIStandalone._ParametersConsumer.num_extends	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_extends
Bio.Blast.NCBIStandalone._ParametersConsumer.num_seqs_better_e	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_seqs_better_e
Bio.Blast.NCBIStandalone._HSPConsumer.strand	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#strand
Bio.Blast.NCBIStandalone._HeaderConsumer.database_info	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#database_info
Bio.Blast.NCBIStandalone._BlastConsumer.end_hsp	Bio.Blast.NCBIStandalone._BlastConsumer-class.html#end_hsp
Bio.Blast.NCBIStandalone._HSPConsumer.sbjct	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#sbjct
Bio.Blast.NCBIStandalone._HeaderConsumer.query_info	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#query_info
Bio.Blast.NCBIStandalone._HSPConsumer.align	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#align
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.database	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#database
Bio.Blast.NCBIStandalone._DescriptionConsumer.start_descriptions	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#start_descriptions
Bio.Blast.NCBIStandalone._ParametersConsumer.num_sequences	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_sequences
Bio.Blast.NCBIStandalone._ParametersConsumer.hsps_prelim_gapped_attempted	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#hsps_prelim_gapped_attempted
Bio.Blast.NCBIStandalone._DescriptionConsumer.description_header	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#description_header
Bio.ParserSupport.AbstractConsumer._unhandled	Bio.ParserSupport.AbstractConsumer-class.html#_unhandled
Bio.Blast.NCBIStandalone._ParametersConsumer.gap_penalties	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_penalties
Bio.Blast.NCBIStandalone._ParametersConsumer.dropoff_1st_pass	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#dropoff_1st_pass
Bio.Blast.NCBIStandalone._AlignmentConsumer.start_alignment	Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#start_alignment
Bio.Blast.NCBIStandalone._ParametersConsumer.database_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#database_length
Bio.Blast.NCBIStandalone._DescriptionConsumer._parse	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#_parse
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.num_letters_in_database	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#num_letters_in_database
Bio.Blast.NCBIStandalone._BlastConsumer.round	Bio.Blast.NCBIStandalone._BlastConsumer-class.html#round
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_hsp_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_hsp_length
Bio.Blast.NCBIStandalone._BlastConsumer.end_header	Bio.Blast.NCBIStandalone._BlastConsumer-class.html#end_header
Bio.Blast.NCBIStandalone._BlastErrorConsumer	Bio.Blast.NCBIStandalone._BlastErrorConsumer-class.html
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.start_database_report	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#start_database_report
Bio.Blast.NCBIStandalone._BlastConsumer.end_database_report	Bio.Blast.NCBIStandalone._BlastConsumer-class.html#end_database_report
Bio.Blast.NCBIStandalone._ParametersConsumer.num_good_extends	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_good_extends
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.posted_date	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#posted_date
Bio.Blast.NCBIStandalone._HSPConsumer._query_re	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#_query_re
Bio.Blast.NCBIStandalone._HeaderConsumer.reference	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#reference
Bio.Blast.NCBIStandalone._BlastConsumer.start_header	Bio.Blast.NCBIStandalone._BlastConsumer-class.html#start_header
Bio.Blast.NCBIStandalone._HSPConsumer.frame	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#frame
Bio.Blast.NCBIStandalone._ParametersConsumer.start_parameters	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#start_parameters
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.num_sequences_in_database	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#num_sequences_in_database
Bio.Blast.NCBIStandalone._BlastConsumer.end_parameters	Bio.Blast.NCBIStandalone._BlastConsumer-class.html#end_parameters
Bio.Blast.NCBIStandalone._ParametersConsumer.threshold	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#threshold
Bio.Blast.NCBIStandalone._HSPConsumer.query	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#query
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_search_space	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_search_space
Bio.Blast.NCBIStandalone._BlastConsumer.end_alignment	Bio.Blast.NCBIStandalone._BlastConsumer-class.html#end_alignment
Bio.Blast.NCBIStandalone._BlastErrorConsumer.__init__	Bio.Blast.NCBIStandalone._BlastErrorConsumer-class.html#__init__
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.gapped	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#gapped
Bio.Blast.NCBIStandalone._ParametersConsumer.window_size	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#window_size
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_search_space_used	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_search_space_used
Bio.Blast.NCBIStandalone._HSPConsumer.score	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#score
Bio.Blast.NCBIStandalone._ParametersConsumer.hsps_prelim_gapped	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#hsps_prelim_gapped
Bio.Blast.NCBIStandalone._AlignmentConsumer.title	Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#title
Bio.Blast.NCBIStandalone._HSPConsumer.identities	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#identities
Bio.Blast.NCBIStandalone._DescriptionConsumer.model_sequences	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#model_sequences
Bio.Blast.NCBIStandalone._AlignmentConsumer.length	Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#length
Bio.ParserSupport.AbstractConsumer.__getattr__	Bio.ParserSupport.AbstractConsumer-class.html#__getattr__
Bio.Blast.NCBIStandalone._ParametersConsumer.frameshift	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#frameshift
Bio.Blast.NCBIStandalone._ParametersConsumer.gap_x_dropoff_final	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_x_dropoff_final
Bio.Blast.NCBIStandalone._ParametersConsumer.matrix	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#matrix
Bio.Blast.NCBIStandalone._HeaderConsumer.version	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#version
Bio.Blast.NCBIStandalone._HSPConsumer._sbjct_re	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#_sbjct_re
Bio.Blast.NCBIStandalone._ParametersConsumer.num_hits	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_hits
Bio.Blast.NCBIStandalone._DescriptionConsumer.converged	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#converged
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_database_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_database_length
Bio.Blast.NCBIStandalone._ParametersConsumer.hsps_gapped	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#hsps_gapped
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.ka_params	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#ka_params
Bio.Blast.NCBIStandalone._DescriptionConsumer.nonmodel_sequences	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#nonmodel_sequences
Bio.Blast.NCBIStandalone._ParametersConsumer.query_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#query_length
Bio.Blast.NCBIStandalone._BlastConsumer.end_descriptions	Bio.Blast.NCBIStandalone._BlastConsumer-class.html#end_descriptions
Bio.Blast.NCBIStandalone._DescriptionConsumer.description	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#description
Bio.Blast.NCBIStandalone._ParametersConsumer.gap_trigger	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_trigger
Bio.Blast.NCBIStandalone._ParametersConsumer.hsps_no_gap	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#hsps_no_gap
Bio.Blast.NCBIStandalone._HSPConsumer.start_hsp	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#start_hsp
Bio.Blast.NCBIStandalone._ParametersConsumer.gap_x_dropoff	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_x_dropoff
Bio.Blast.NCBIStandalone._AlignmentConsumer.multalign	Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#multalign
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.ka_params_gap	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#ka_params_gap
Bio.Blast.NCBIStandalone._DescriptionConsumer.no_hits	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#no_hits
Bio.Blast.NCBIStandalone._ParametersConsumer.blast_cutoff	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#blast_cutoff
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_query_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_query_length
Bio.ParserSupport.AbstractConsumer._unhandled_section	Bio.ParserSupport.AbstractConsumer-class.html#_unhandled_section
Bio.Blast.NCBIStandalone._ParametersConsumer.num_extends	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_extends
Bio.Blast.NCBIStandalone._BlastErrorConsumer.noevent	Bio.Blast.NCBIStandalone._BlastErrorConsumer-class.html#noevent
Bio.Blast.NCBIStandalone._ParametersConsumer.num_seqs_better_e	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_seqs_better_e
Bio.Blast.NCBIStandalone._HSPConsumer.strand	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#strand
Bio.Blast.NCBIStandalone._HeaderConsumer.database_info	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#database_info
Bio.Blast.NCBIStandalone._BlastConsumer.end_hsp	Bio.Blast.NCBIStandalone._BlastConsumer-class.html#end_hsp
Bio.Blast.NCBIStandalone._HSPConsumer.sbjct	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#sbjct
Bio.Blast.NCBIStandalone._HeaderConsumer.query_info	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#query_info
Bio.Blast.NCBIStandalone._HSPConsumer.align	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#align
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.database	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#database
Bio.Blast.NCBIStandalone._DescriptionConsumer.start_descriptions	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#start_descriptions
Bio.Blast.NCBIStandalone._ParametersConsumer.num_sequences	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_sequences
Bio.Blast.NCBIStandalone._ParametersConsumer.hsps_prelim_gapped_attempted	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#hsps_prelim_gapped_attempted
Bio.Blast.NCBIStandalone._DescriptionConsumer.description_header	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#description_header
Bio.ParserSupport.AbstractConsumer._unhandled	Bio.ParserSupport.AbstractConsumer-class.html#_unhandled
Bio.Blast.NCBIStandalone._ParametersConsumer.gap_penalties	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_penalties
Bio.Blast.NCBIStandalone._ParametersConsumer.dropoff_1st_pass	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#dropoff_1st_pass
Bio.Blast.NCBIStandalone._AlignmentConsumer.start_alignment	Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#start_alignment
Bio.Blast.NCBIStandalone._ParametersConsumer.database_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#database_length
Bio.Blast.NCBIStandalone._DescriptionConsumer._parse	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#_parse
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.num_letters_in_database	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#num_letters_in_database
Bio.Blast.NCBIStandalone._BlastConsumer.round	Bio.Blast.NCBIStandalone._BlastConsumer-class.html#round
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_hsp_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_hsp_length
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Bio.Blast.NCBIStandalone._DatabaseReportConsumer	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.start_database_report	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#start_database_report
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.num_sequences_in_database	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#num_sequences_in_database
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.end_database_report	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#end_database_report
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.posted_date	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#posted_date
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.database	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#database
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.gapped	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#gapped
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.ka_params_gap	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#ka_params_gap
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.ka_params	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#ka_params
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.num_letters_in_database	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#num_letters_in_database
Bio.Blast.NCBIStandalone._DescriptionConsumer	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html
Bio.Blast.NCBIStandalone._DescriptionConsumer.nonmodel_sequences	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#nonmodel_sequences
Bio.Blast.NCBIStandalone._DescriptionConsumer.end_descriptions	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#end_descriptions
Bio.Blast.NCBIStandalone._DescriptionConsumer.description	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#description
Bio.Blast.NCBIStandalone._DescriptionConsumer.model_sequences	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#model_sequences
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Bio.Blast.NCBIStandalone._DescriptionConsumer.description_header	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#description_header
Bio.Blast.NCBIStandalone._DescriptionConsumer.no_hits	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#no_hits
Bio.Blast.NCBIStandalone._DescriptionConsumer.converged	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#converged
Bio.Blast.NCBIStandalone._DescriptionConsumer._parse	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#_parse
Bio.Blast.NCBIStandalone._DescriptionConsumer.round	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#round
Bio.Blast.NCBIStandalone._HSPConsumer	Bio.Blast.NCBIStandalone._HSPConsumer-class.html
Bio.Blast.NCBIStandalone._HSPConsumer.end_hsp	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#end_hsp
Bio.Blast.NCBIStandalone._HSPConsumer.sbjct	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#sbjct
Bio.Blast.NCBIStandalone._HSPConsumer.start_hsp	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#start_hsp
Bio.Blast.NCBIStandalone._HSPConsumer.frame	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#frame
Bio.Blast.NCBIStandalone._HSPConsumer.score	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#score
Bio.Blast.NCBIStandalone._HSPConsumer._sbjct_re	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#_sbjct_re
Bio.Blast.NCBIStandalone._HSPConsumer._query_re	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#_query_re
Bio.Blast.NCBIStandalone._HSPConsumer.query	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#query
Bio.Blast.NCBIStandalone._HSPConsumer.identities	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#identities
Bio.Blast.NCBIStandalone._HSPConsumer.align	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#align
Bio.Blast.NCBIStandalone._HSPConsumer.strand	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#strand
Bio.Blast.NCBIStandalone._HeaderConsumer	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html
Bio.Blast.NCBIStandalone._HeaderConsumer.reference	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#reference
Bio.Blast.NCBIStandalone._HeaderConsumer.start_header	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#start_header
Bio.Blast.NCBIStandalone._HeaderConsumer.query_info	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#query_info
Bio.Blast.NCBIStandalone._HeaderConsumer.version	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#version
Bio.Blast.NCBIStandalone._HeaderConsumer.end_header	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#end_header
Bio.Blast.NCBIStandalone._HeaderConsumer.database_info	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#database_info
Bio.Blast.NCBIStandalone._PSIBlastConsumer	Bio.Blast.NCBIStandalone._PSIBlastConsumer-class.html
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.start_database_report	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#start_database_report
Bio.Blast.NCBIStandalone._PSIBlastConsumer.end_database_report	Bio.Blast.NCBIStandalone._PSIBlastConsumer-class.html#end_database_report
Bio.Blast.NCBIStandalone._ParametersConsumer.num_good_extends	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_good_extends
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.posted_date	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#posted_date
Bio.Blast.NCBIStandalone._HSPConsumer._query_re	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#_query_re
Bio.Blast.NCBIStandalone._HeaderConsumer.reference	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#reference
Bio.Blast.NCBIStandalone._PSIBlastConsumer.start_header	Bio.Blast.NCBIStandalone._PSIBlastConsumer-class.html#start_header
Bio.Blast.NCBIStandalone._HSPConsumer.frame	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#frame
Bio.Blast.NCBIStandalone._ParametersConsumer.start_parameters	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#start_parameters
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.num_sequences_in_database	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#num_sequences_in_database
Bio.Blast.NCBIStandalone._PSIBlastConsumer.end_parameters	Bio.Blast.NCBIStandalone._PSIBlastConsumer-class.html#end_parameters
Bio.Blast.NCBIStandalone._ParametersConsumer.threshold	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#threshold
Bio.Blast.NCBIStandalone._HSPConsumer.query	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#query
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_search_space	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_search_space
Bio.Blast.NCBIStandalone._PSIBlastConsumer.end_alignment	Bio.Blast.NCBIStandalone._PSIBlastConsumer-class.html#end_alignment
Bio.Blast.NCBIStandalone._PSIBlastConsumer.__init__	Bio.Blast.NCBIStandalone._PSIBlastConsumer-class.html#__init__
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.gapped	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#gapped
Bio.Blast.NCBIStandalone._ParametersConsumer.window_size	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#window_size
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_search_space_used	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_search_space_used
Bio.Blast.NCBIStandalone._HSPConsumer.score	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#score
Bio.Blast.NCBIStandalone._ParametersConsumer.hsps_prelim_gapped	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#hsps_prelim_gapped
Bio.Blast.NCBIStandalone._AlignmentConsumer.title	Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#title
Bio.Blast.NCBIStandalone._HSPConsumer.identities	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#identities
Bio.Blast.NCBIStandalone._DescriptionConsumer.model_sequences	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#model_sequences
Bio.Blast.NCBIStandalone._AlignmentConsumer.length	Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#length
Bio.ParserSupport.AbstractConsumer.__getattr__	Bio.ParserSupport.AbstractConsumer-class.html#__getattr__
Bio.Blast.NCBIStandalone._ParametersConsumer.frameshift	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#frameshift
Bio.Blast.NCBIStandalone._ParametersConsumer.gap_x_dropoff_final	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_x_dropoff_final
Bio.Blast.NCBIStandalone._ParametersConsumer.matrix	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#matrix
Bio.Blast.NCBIStandalone._HeaderConsumer.version	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#version
Bio.Blast.NCBIStandalone._HSPConsumer._sbjct_re	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#_sbjct_re
Bio.Blast.NCBIStandalone._ParametersConsumer.num_hits	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_hits
Bio.Blast.NCBIStandalone._DescriptionConsumer.converged	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#converged
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_database_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_database_length
Bio.Blast.NCBIStandalone._ParametersConsumer.hsps_gapped	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#hsps_gapped
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.ka_params	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#ka_params
Bio.Blast.NCBIStandalone._DescriptionConsumer.nonmodel_sequences	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#nonmodel_sequences
Bio.Blast.NCBIStandalone._ParametersConsumer.query_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#query_length
Bio.Blast.NCBIStandalone._PSIBlastConsumer.end_descriptions	Bio.Blast.NCBIStandalone._PSIBlastConsumer-class.html#end_descriptions
Bio.Blast.NCBIStandalone._DescriptionConsumer.description	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#description
Bio.Blast.NCBIStandalone._ParametersConsumer.gap_trigger	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_trigger
Bio.Blast.NCBIStandalone._ParametersConsumer.hsps_no_gap	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#hsps_no_gap
Bio.Blast.NCBIStandalone._HSPConsumer.start_hsp	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#start_hsp
Bio.Blast.NCBIStandalone._ParametersConsumer.gap_x_dropoff	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_x_dropoff
Bio.Blast.NCBIStandalone._AlignmentConsumer.multalign	Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#multalign
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.ka_params_gap	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#ka_params_gap
Bio.Blast.NCBIStandalone._DescriptionConsumer.no_hits	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#no_hits
Bio.Blast.NCBIStandalone._ParametersConsumer.blast_cutoff	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#blast_cutoff
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_query_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_query_length
Bio.ParserSupport.AbstractConsumer._unhandled_section	Bio.ParserSupport.AbstractConsumer-class.html#_unhandled_section
Bio.Blast.NCBIStandalone._ParametersConsumer.num_extends	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_extends
Bio.Blast.NCBIStandalone._ParametersConsumer.num_seqs_better_e	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_seqs_better_e
Bio.Blast.NCBIStandalone._HSPConsumer.strand	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#strand
Bio.Blast.NCBIStandalone._HeaderConsumer.database_info	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#database_info
Bio.Blast.NCBIStandalone._PSIBlastConsumer.end_hsp	Bio.Blast.NCBIStandalone._PSIBlastConsumer-class.html#end_hsp
Bio.Blast.NCBIStandalone._HSPConsumer.sbjct	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#sbjct
Bio.Blast.NCBIStandalone._HeaderConsumer.query_info	Bio.Blast.NCBIStandalone._HeaderConsumer-class.html#query_info
Bio.Blast.NCBIStandalone._HSPConsumer.align	Bio.Blast.NCBIStandalone._HSPConsumer-class.html#align
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.database	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#database
Bio.Blast.NCBIStandalone._PSIBlastConsumer.start_descriptions	Bio.Blast.NCBIStandalone._PSIBlastConsumer-class.html#start_descriptions
Bio.Blast.NCBIStandalone._ParametersConsumer.num_sequences	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_sequences
Bio.Blast.NCBIStandalone._ParametersConsumer.hsps_prelim_gapped_attempted	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#hsps_prelim_gapped_attempted
Bio.Blast.NCBIStandalone._DescriptionConsumer.description_header	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#description_header
Bio.ParserSupport.AbstractConsumer._unhandled	Bio.ParserSupport.AbstractConsumer-class.html#_unhandled
Bio.Blast.NCBIStandalone._ParametersConsumer.gap_penalties	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_penalties
Bio.Blast.NCBIStandalone._ParametersConsumer.dropoff_1st_pass	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#dropoff_1st_pass
Bio.Blast.NCBIStandalone._AlignmentConsumer.start_alignment	Bio.Blast.NCBIStandalone._AlignmentConsumer-class.html#start_alignment
Bio.Blast.NCBIStandalone._ParametersConsumer.database_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#database_length
Bio.Blast.NCBIStandalone._DescriptionConsumer._parse	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#_parse
Bio.Blast.NCBIStandalone._DatabaseReportConsumer.num_letters_in_database	Bio.Blast.NCBIStandalone._DatabaseReportConsumer-class.html#num_letters_in_database
Bio.Blast.NCBIStandalone._DescriptionConsumer.round	Bio.Blast.NCBIStandalone._DescriptionConsumer-class.html#round
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_hsp_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_hsp_length
Bio.Blast.NCBIStandalone._PSIBlastConsumer.end_header	Bio.Blast.NCBIStandalone._PSIBlastConsumer-class.html#end_header
Bio.Blast.NCBIStandalone._ParametersConsumer	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html
Bio.Blast.NCBIStandalone._ParametersConsumer.num_good_extends	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_good_extends
Bio.Blast.NCBIStandalone._ParametersConsumer.start_parameters	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#start_parameters
Bio.Blast.NCBIStandalone._ParametersConsumer.end_parameters	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#end_parameters
Bio.Blast.NCBIStandalone._ParametersConsumer.threshold	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#threshold
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_search_space	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_search_space
Bio.Blast.NCBIStandalone._ParametersConsumer.window_size	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#window_size
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_search_space_used	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_search_space_used
Bio.Blast.NCBIStandalone._ParametersConsumer.matrix	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#matrix
Bio.Blast.NCBIStandalone._ParametersConsumer.hsps_prelim_gapped	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#hsps_prelim_gapped
Bio.Blast.NCBIStandalone._ParametersConsumer.frameshift	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#frameshift
Bio.Blast.NCBIStandalone._ParametersConsumer.gap_x_dropoff_final	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_x_dropoff_final
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_database_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_database_length
Bio.Blast.NCBIStandalone._ParametersConsumer.hsps_gapped	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#hsps_gapped
Bio.Blast.NCBIStandalone._ParametersConsumer.hsps_prelim_gapped_attempted	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#hsps_prelim_gapped_attempted
Bio.Blast.NCBIStandalone._ParametersConsumer.gap_trigger	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_trigger
Bio.Blast.NCBIStandalone._ParametersConsumer.hsps_no_gap	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#hsps_no_gap
Bio.Blast.NCBIStandalone._ParametersConsumer.num_hits	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_hits
Bio.Blast.NCBIStandalone._ParametersConsumer.blast_cutoff	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#blast_cutoff
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_query_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_query_length
Bio.Blast.NCBIStandalone._ParametersConsumer.database_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#database_length
Bio.Blast.NCBIStandalone._ParametersConsumer.num_seqs_better_e	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_seqs_better_e
Bio.Blast.NCBIStandalone._ParametersConsumer.query_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#query_length
Bio.Blast.NCBIStandalone._ParametersConsumer.num_sequences	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_sequences
Bio.Blast.NCBIStandalone._ParametersConsumer.gap_penalties	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_penalties
Bio.Blast.NCBIStandalone._ParametersConsumer.dropoff_1st_pass	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#dropoff_1st_pass
Bio.Blast.NCBIStandalone._ParametersConsumer.gap_x_dropoff	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#gap_x_dropoff
Bio.Blast.NCBIStandalone._ParametersConsumer.num_extends	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#num_extends
Bio.Blast.NCBIStandalone._ParametersConsumer.effective_hsp_length	Bio.Blast.NCBIStandalone._ParametersConsumer-class.html#effective_hsp_length
Bio.Blast.NCBIStandalone._Scanner	Bio.Blast.NCBIStandalone._Scanner-class.html
Bio.Blast.NCBIStandalone._Scanner.feed	Bio.Blast.NCBIStandalone._Scanner-class.html#feed
Bio.Blast.NCBIStandalone._Scanner._scan_descriptions	Bio.Blast.NCBIStandalone._Scanner-class.html#_scan_descriptions
Bio.Blast.NCBIStandalone._Scanner._scan_header	Bio.Blast.NCBIStandalone._Scanner-class.html#_scan_header
Bio.Blast.NCBIStandalone._Scanner._scan_pairwise_alignments	Bio.Blast.NCBIStandalone._Scanner-class.html#_scan_pairwise_alignments
Bio.Blast.NCBIStandalone._Scanner._scan_parameters	Bio.Blast.NCBIStandalone._Scanner-class.html#_scan_parameters
Bio.Blast.NCBIStandalone._Scanner._scan_hsp_header	Bio.Blast.NCBIStandalone._Scanner-class.html#_scan_hsp_header
Bio.Blast.NCBIStandalone._Scanner._scan_alignments	Bio.Blast.NCBIStandalone._Scanner-class.html#_scan_alignments
Bio.Blast.NCBIStandalone._Scanner._scan_alignment_header	Bio.Blast.NCBIStandalone._Scanner-class.html#_scan_alignment_header
Bio.Blast.NCBIStandalone._Scanner._scan_database_report	Bio.Blast.NCBIStandalone._Scanner-class.html#_scan_database_report
Bio.Blast.NCBIStandalone._Scanner._scan_one_pairwise_alignment	Bio.Blast.NCBIStandalone._Scanner-class.html#_scan_one_pairwise_alignment
Bio.Blast.NCBIStandalone._Scanner._scan_masterslave_alignment	Bio.Blast.NCBIStandalone._Scanner-class.html#_scan_masterslave_alignment
Bio.Blast.NCBIStandalone._Scanner._scan_rounds	Bio.Blast.NCBIStandalone._Scanner-class.html#_scan_rounds
Bio.Blast.NCBIStandalone._Scanner._scan_hsp	Bio.Blast.NCBIStandalone._Scanner-class.html#_scan_hsp
Bio.Blast.NCBIStandalone._Scanner._scan_hsp_alignment	Bio.Blast.NCBIStandalone._Scanner-class.html#_scan_hsp_alignment
Bio.Blast.NCBIXML.BlastParser	Bio.Blast.NCBIXML.BlastParser-class.html
Bio.Blast.NCBIXML.BlastParser._end_BlastOutput_query_ID	Bio.Blast.NCBIXML.BlastParser-class.html#_end_BlastOutput_query_ID
Bio.Blast.NCBIXML.BlastParser._end_Hit	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hit
Bio.Blast.NCBIXML.BlastParser._end_Statistics_hsp_len	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Statistics_hsp_len
Bio.Blast.NCBIXML.BlastParser._end_Hsp_hit_frame	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hsp_hit_frame
Bio.Blast.NCBIXML.BlastParser._end_BlastOutput_reference	Bio.Blast.NCBIXML.BlastParser-class.html#_end_BlastOutput_reference
Bio.Blast.NCBIXML.BlastParser._end_Hit_def	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hit_def
Bio.Blast.NCBIXML.BlastParser._end_Hsp_identity	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hsp_identity
Bio.Blast.NCBIXML.BlastParser._end_Hsp_qseq	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hsp_qseq
Bio.Blast.NCBIXML.BlastParser._end_BlastOutput_query_len	Bio.Blast.NCBIXML.BlastParser-class.html#_end_BlastOutput_query_len
Bio.Blast.NCBIXML.BlastParser._end_BlastOutput_db	Bio.Blast.NCBIXML.BlastParser-class.html#_end_BlastOutput_db
Bio.Blast.NCBIXML.BlastParser._end_Iteration_query_len	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Iteration_query_len
Bio.Blast.NCBIXML.BlastParser._end_Iteration	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Iteration
Bio.Blast.NCBIXML.BlastParser.__init__	Bio.Blast.NCBIXML.BlastParser-class.html#__init__
Bio.Blast.NCBIXML.BlastParser._end_Hsp_hit_to	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hsp_hit_to
Bio.Blast.NCBIXML.BlastParser._end_Iteration_query_def	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Iteration_query_def
Bio.Blast.NCBIXML.BlastParser._end_BlastOutput_query_def	Bio.Blast.NCBIXML.BlastParser-class.html#_end_BlastOutput_query_def
Bio.Blast.NCBIXML.BlastParser._end_Hsp_evalue	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hsp_evalue
Bio.Blast.NCBIXML.BlastParser._end_Hit_accession	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hit_accession
Bio.Blast.NCBIXML.BlastParser._end_BlastOutput_program	Bio.Blast.NCBIXML.BlastParser-class.html#_end_BlastOutput_program
Bio.Blast.NCBIXML.BlastParser._end_Hsp_query_frame	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hsp_query_frame
Bio.Blast.NCBIXML.BlastParser._end_Parameters_filter	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Parameters_filter
Bio.Blast.NCBIXML.BlastParser._end_Hit_len	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hit_len
Bio.Blast.NCBIXML.BlastParser._end_Statistics_db_len	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Statistics_db_len
Bio.Blast.NCBIXML.BlastParser._end_Hsp_query_to	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hsp_query_to
Bio.Blast.NCBIXML.BlastParser._end_Statistics_db_num	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Statistics_db_num
Bio.Blast.NCBIXML.BlastParser._end_Hsp_bit_score	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hsp_bit_score
Bio.Blast.NCBIXML.BlastParser._end_Parameters_gap_extend	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Parameters_gap_extend
Bio.Blast.NCBIXML.BlastParser._end_Statistics_kappa	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Statistics_kappa
Bio.Blast.NCBIXML._XMLparser.endElement	Bio.Blast.NCBIXML._XMLparser-class.html#endElement
Bio.Blast.NCBIXML.BlastParser._end_Hsp_score	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hsp_score
Bio.Blast.NCBIXML.BlastParser._end_Parameters_sc_match	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Parameters_sc_match
Bio.Blast.NCBIXML.BlastParser._end_Parameters_sc_mismatch	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Parameters_sc_mismatch
Bio.Blast.NCBIXML.BlastParser._end_Parameters_expect	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Parameters_expect
Bio.Blast.NCBIXML.BlastParser._end_Hsp_query_from	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hsp_query_from
Bio.Blast.NCBIXML.BlastParser._end_Hsp_gaps	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hsp_gaps
Bio.Blast.NCBIXML.BlastParser._end_Statistics_lambda	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Statistics_lambda
Bio.Blast.NCBIXML.BlastParser._end_Hsp_positive	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hsp_positive
Bio.Blast.NCBIXML.BlastParser._end_Hsp_hseq	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hsp_hseq
Bio.Blast.NCBIXML._XMLparser.startElement	Bio.Blast.NCBIXML._XMLparser-class.html#startElement
Bio.Blast.NCBIXML.BlastParser._end_Iteration_query_ID	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Iteration_query_ID
Bio.Blast.NCBIXML._XMLparser.characters	Bio.Blast.NCBIXML._XMLparser-class.html#characters
Bio.Blast.NCBIXML.BlastParser._end_Parameters_gap_open	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Parameters_gap_open
Bio.Blast.NCBIXML._XMLparser._secure_name	Bio.Blast.NCBIXML._XMLparser-class.html#_secure_name
Bio.Blast.NCBIXML.BlastParser._end_BlastOutput_version	Bio.Blast.NCBIXML.BlastParser-class.html#_end_BlastOutput_version
Bio.Blast.NCBIXML.BlastParser._end_Parameters_matrix	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Parameters_matrix
Bio.Blast.NCBIXML.BlastParser.reset	Bio.Blast.NCBIXML.BlastParser-class.html#reset
Bio.Blast.NCBIXML.BlastParser._start_Hit	Bio.Blast.NCBIXML.BlastParser-class.html#_start_Hit
Bio.Blast.NCBIXML.BlastParser._end_Hsp_align_len	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hsp_align_len
Bio.Blast.NCBIXML.BlastParser._end_Hsp_midline	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hsp_midline
Bio.Blast.NCBIXML.BlastParser._end_Hit_id	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hit_id
Bio.Blast.NCBIXML.BlastParser._start_Iteration	Bio.Blast.NCBIXML.BlastParser-class.html#_start_Iteration
Bio.Blast.NCBIXML.BlastParser._end_BlastOutput_hits	Bio.Blast.NCBIXML.BlastParser-class.html#_end_BlastOutput_hits
Bio.Blast.NCBIXML.BlastParser._end_Hsp_hit_from	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Hsp_hit_from
Bio.Blast.NCBIXML.BlastParser._start_Hsp	Bio.Blast.NCBIXML.BlastParser-class.html#_start_Hsp
Bio.Blast.NCBIXML.BlastParser._end_Statistics_entropy	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Statistics_entropy
Bio.Blast.NCBIXML.BlastParser._end_Statistics_eff_space	Bio.Blast.NCBIXML.BlastParser-class.html#_end_Statistics_eff_space
Bio.Blast.NCBIXML._XMLparser	Bio.Blast.NCBIXML._XMLparser-class.html
Bio.Blast.NCBIXML._XMLparser.endElement	Bio.Blast.NCBIXML._XMLparser-class.html#endElement
Bio.Blast.NCBIXML._XMLparser.startElement	Bio.Blast.NCBIXML._XMLparser-class.html#startElement
Bio.Blast.NCBIXML._XMLparser.__init__	Bio.Blast.NCBIXML._XMLparser-class.html#__init__
Bio.Blast.NCBIXML._XMLparser.characters	Bio.Blast.NCBIXML._XMLparser-class.html#characters
Bio.Blast.NCBIXML._XMLparser._secure_name	Bio.Blast.NCBIXML._XMLparser-class.html#_secure_name
Bio.Blast.ParseBlastTable.BlastTableEntry	Bio.Blast.ParseBlastTable.BlastTableEntry-class.html
Bio.Blast.ParseBlastTable.BlastTableEntry.__init__	Bio.Blast.ParseBlastTable.BlastTableEntry-class.html#__init__
Bio.Blast.ParseBlastTable.BlastTableReader	Bio.Blast.ParseBlastTable.BlastTableReader-class.html
Bio.Blast.ParseBlastTable.BlastTableReader._consume_header	Bio.Blast.ParseBlastTable.BlastTableReader-class.html#_consume_header
Bio.Blast.ParseBlastTable.BlastTableReader.next	Bio.Blast.ParseBlastTable.BlastTableReader-class.html#next
Bio.Blast.ParseBlastTable.BlastTableReader._consume_entry	Bio.Blast.ParseBlastTable.BlastTableReader-class.html#_consume_entry
Bio.Blast.ParseBlastTable.BlastTableReader._parse_query	Bio.Blast.ParseBlastTable.BlastTableReader-class.html#_parse_query
Bio.Blast.ParseBlastTable.BlastTableReader._parse_fields	Bio.Blast.ParseBlastTable.BlastTableReader-class.html#_parse_fields
Bio.Blast.ParseBlastTable.BlastTableReader._parse_version	Bio.Blast.ParseBlastTable.BlastTableReader-class.html#_parse_version
Bio.Blast.ParseBlastTable.BlastTableReader._parse_iteration	Bio.Blast.ParseBlastTable.BlastTableReader-class.html#_parse_iteration
Bio.Blast.ParseBlastTable.BlastTableReader._Parse	Bio.Blast.ParseBlastTable.BlastTableReader-class.html#_Parse
Bio.Blast.ParseBlastTable.BlastTableReader._parse_database	Bio.Blast.ParseBlastTable.BlastTableReader-class.html#_parse_database
Bio.Blast.ParseBlastTable.BlastTableReader.__init__	Bio.Blast.ParseBlastTable.BlastTableReader-class.html#__init__
Bio.Blast.ParseBlastTable.BlastTableRec	Bio.Blast.ParseBlastTable.BlastTableRec-class.html
Bio.Blast.ParseBlastTable.BlastTableRec.add_entry	Bio.Blast.ParseBlastTable.BlastTableRec-class.html#add_entry
Bio.Blast.ParseBlastTable.BlastTableRec.__init__	Bio.Blast.ParseBlastTable.BlastTableRec-class.html#__init__
Bio.Blast.Record.Alignment	Bio.Blast.Record.Alignment-class.html
Bio.Blast.Record.Alignment.__str__	Bio.Blast.Record.Alignment-class.html#__str__
Bio.Blast.Record.Alignment.__init__	Bio.Blast.Record.Alignment-class.html#__init__
Bio.Blast.Record.Blast	Bio.Blast.Record.Blast-class.html
Bio.Blast.Record.Blast.__init__	Bio.Blast.Record.Blast-class.html#__init__
Bio.Blast.Record.DatabaseReport	Bio.Blast.Record.DatabaseReport-class.html
Bio.Blast.Record.DatabaseReport.__init__	Bio.Blast.Record.DatabaseReport-class.html#__init__
Bio.Blast.Record.Description	Bio.Blast.Record.Description-class.html
Bio.Blast.Record.Description.__str__	Bio.Blast.Record.Description-class.html#__str__
Bio.Blast.Record.Description.__init__	Bio.Blast.Record.Description-class.html#__init__
Bio.Blast.Record.HSP	Bio.Blast.Record.HSP-class.html
Bio.Blast.Record.HSP.__str__	Bio.Blast.Record.HSP-class.html#__str__
Bio.Blast.Record.HSP.__init__	Bio.Blast.Record.HSP-class.html#__init__
Bio.Blast.Record.Header	Bio.Blast.Record.Header-class.html
Bio.Blast.Record.Header.__init__	Bio.Blast.Record.Header-class.html#__init__
Bio.Blast.Record.MultipleAlignment	Bio.Blast.Record.MultipleAlignment-class.html
Bio.Blast.Record.MultipleAlignment.to_generic	Bio.Blast.Record.MultipleAlignment-class.html#to_generic
Bio.Blast.Record.MultipleAlignment.__init__	Bio.Blast.Record.MultipleAlignment-class.html#__init__
Bio.Blast.Record.PSIBlast	Bio.Blast.Record.PSIBlast-class.html
Bio.Blast.Record.PSIBlast.__init__	Bio.Blast.Record.PSIBlast-class.html#__init__
Bio.Blast.Record.Parameters	Bio.Blast.Record.Parameters-class.html
Bio.Blast.Record.Parameters.__init__	Bio.Blast.Record.Parameters-class.html#__init__
Bio.Blast.Record.Round	Bio.Blast.Record.Round-class.html
Bio.Blast.Record.Round.__init__	Bio.Blast.Record.Round-class.html#__init__
Bio.CAPS.AlignmentHasDifferentLengthsError	Bio.CAPS.AlignmentHasDifferentLengthsError-class.html
Bio.CAPS.CAPSMap	Bio.CAPS.CAPSMap-class.html
Bio.CAPS.CAPSMap._digest	Bio.CAPS.CAPSMap-class.html#_digest
Bio.CAPS.CAPSMap._digest_with	Bio.CAPS.CAPSMap-class.html#_digest_with
Bio.CAPS.CAPSMap.__init__	Bio.CAPS.CAPSMap-class.html#__init__
Bio.CAPS.DifferentialCutsite	Bio.CAPS.DifferentialCutsite-class.html
Bio.CAPS.DifferentialCutsite.__init__	Bio.CAPS.DifferentialCutsite-class.html#__init__
Bio.Clustalw.ClustalAlignment	Bio.Clustalw.ClustalAlignment-class.html
Bio.Clustalw.ClustalAlignment.DEFAULT_VERSION	Bio.Clustalw.ClustalAlignment-class.html#DEFAULT_VERSION
Bio.Align.Generic.Alignment.get_all_seqs	Bio.Align.Generic.Alignment-class.html#get_all_seqs
Bio.Align.Generic.Alignment.__getitem__	Bio.Align.Generic.Alignment-class.html#__getitem__
Bio.Align.Generic.Alignment.format	Bio.Align.Generic.Alignment-class.html#format
Bio.Align.Generic.Alignment.get_alignment_length	Bio.Align.Generic.Alignment-class.html#get_alignment_length
Bio.Clustalw.ClustalAlignment.__str__	Bio.Clustalw.ClustalAlignment-class.html#__str__
Bio.Align.Generic.Alignment.get_column	Bio.Align.Generic.Alignment-class.html#get_column
Bio.Align.Generic.Alignment.__format__	Bio.Align.Generic.Alignment-class.html#__format__
Bio.Align.Generic.Alignment.add_sequence	Bio.Align.Generic.Alignment-class.html#add_sequence
Bio.Align.Generic.Alignment.__len__	Bio.Align.Generic.Alignment-class.html#__len__
Bio.Align.Generic.Alignment.__iter__	Bio.Align.Generic.Alignment-class.html#__iter__
Bio.Align.Generic.Alignment.get_seq_by_num	Bio.Align.Generic.Alignment-class.html#get_seq_by_num
Bio.Align.Generic.Alignment._str_line	Bio.Align.Generic.Alignment-class.html#_str_line
Bio.Align.Generic.Alignment.__repr__	Bio.Align.Generic.Alignment-class.html#__repr__
Bio.Clustalw.ClustalAlignment.__init__	Bio.Clustalw.ClustalAlignment-class.html#__init__
Bio.Clustalw.MultipleAlignCL	Bio.Clustalw.MultipleAlignCL-class.html
Bio.Clustalw.MultipleAlignCL.RESIDUE_TYPES	Bio.Clustalw.MultipleAlignCL-class.html#RESIDUE_TYPES
Bio.Clustalw.MultipleAlignCL.DNA_MATRIX	Bio.Clustalw.MultipleAlignCL-class.html#DNA_MATRIX
Bio.Clustalw.MultipleAlignCL.OUTPUT_CASE	Bio.Clustalw.MultipleAlignCL-class.html#OUTPUT_CASE
Bio.Clustalw.MultipleAlignCL.set_protein_matrix	Bio.Clustalw.MultipleAlignCL-class.html#set_protein_matrix
Bio.Clustalw.MultipleAlignCL.set_dna_matrix	Bio.Clustalw.MultipleAlignCL-class.html#set_dna_matrix
Bio.Clustalw.MultipleAlignCL.OUTPUT_TYPES	Bio.Clustalw.MultipleAlignCL-class.html#OUTPUT_TYPES
Bio.Clustalw.MultipleAlignCL.__str__	Bio.Clustalw.MultipleAlignCL-class.html#__str__
Bio.Clustalw.MultipleAlignCL.set_new_guide_tree	Bio.Clustalw.MultipleAlignCL-class.html#set_new_guide_tree
Bio.Clustalw.MultipleAlignCL.set_type	Bio.Clustalw.MultipleAlignCL-class.html#set_type
Bio.Clustalw.MultipleAlignCL.__init__	Bio.Clustalw.MultipleAlignCL-class.html#__init__
Bio.Clustalw.MultipleAlignCL.set_guide_tree	Bio.Clustalw.MultipleAlignCL-class.html#set_guide_tree
Bio.Clustalw.MultipleAlignCL.PROTEIN_MATRIX	Bio.Clustalw.MultipleAlignCL-class.html#PROTEIN_MATRIX
Bio.Clustalw.MultipleAlignCL.OUTPUT_ORDER	Bio.Clustalw.MultipleAlignCL-class.html#OUTPUT_ORDER
Bio.Clustalw.MultipleAlignCL.OUTPUT_SEQNOS	Bio.Clustalw.MultipleAlignCL-class.html#OUTPUT_SEQNOS
Bio.Clustalw.MultipleAlignCL.set_output	Bio.Clustalw.MultipleAlignCL-class.html#set_output
Bio.Cluster.Record	Bio.Cluster.Record-class.html
Bio.Cluster.Record._savekmeans	Bio.Cluster.Record-class.html#_savekmeans
Bio.Cluster.Record.distancematrix	Bio.Cluster.Record-class.html#distancematrix
Bio.Cluster.Record.clustercentroids	Bio.Cluster.Record-class.html#clustercentroids
Bio.Cluster.Record.clusterdistance	Bio.Cluster.Record-class.html#clusterdistance
Bio.Cluster.Record._savedata	Bio.Cluster.Record-class.html#_savedata
Bio.Cluster.Record.kcluster	Bio.Cluster.Record-class.html#kcluster
Bio.Cluster.Record.treecluster	Bio.Cluster.Record-class.html#treecluster
Bio.Cluster.Record.save	Bio.Cluster.Record-class.html#save
Bio.Cluster.Record.somcluster	Bio.Cluster.Record-class.html#somcluster
Bio.Cluster.Record.__init__	Bio.Cluster.Record-class.html#__init__
Bio.Compass.Iterator	Bio.Compass.Iterator-class.html
Bio.Compass.Iterator.__init__	Bio.Compass.Iterator-class.html#__init__
Bio.Compass.Iterator.next	Bio.Compass.Iterator-class.html#next
Bio.Compass.Record	Bio.Compass.Record-class.html
Bio.Compass.Record.hit_coverage	Bio.Compass.Record-class.html#hit_coverage
Bio.Compass.Record.query_coverage	Bio.Compass.Record-class.html#query_coverage
Bio.Compass.Record.__init__	Bio.Compass.Record-class.html#__init__
Bio.Compass.RecordParser	Bio.Compass.RecordParser-class.html
Bio.Compass.RecordParser.parse	Bio.Compass.RecordParser-class.html#parse
Bio.ParserSupport.AbstractParser.parse_file	Bio.ParserSupport.AbstractParser-class.html#parse_file
Bio.ParserSupport.AbstractParser.parse_str	Bio.ParserSupport.AbstractParser-class.html#parse_str
Bio.Compass.RecordParser.__init__	Bio.Compass.RecordParser-class.html#__init__
Bio.Compass._Consumer	Bio.Compass._Consumer-class.html
Bio.Compass._Consumer.query_alignment	Bio.Compass._Consumer-class.html#query_alignment
Bio.Compass._Consumer._re_align	Bio.Compass._Consumer-class.html#_re_align
Bio.Compass._Consumer._re_threshold	Bio.Compass._Consumer-class.html#_re_threshold
Bio.Compass._Consumer.positive_alignment	Bio.Compass._Consumer-class.html#positive_alignment
Bio.Compass._Consumer.lengths	Bio.Compass._Consumer-class.html#lengths
Bio.Compass._Consumer.profilewidth	Bio.Compass._Consumer-class.html#profilewidth
Bio.Compass._Consumer._re_names	Bio.Compass._Consumer-class.html#_re_names
Bio.Compass._Consumer._re_positive_alignment	Bio.Compass._Consumer-class.html#_re_positive_alignment
Bio.Compass._Consumer._re_profilewidth	Bio.Compass._Consumer-class.html#_re_profilewidth
Bio.Compass._Consumer._re_scores	Bio.Compass._Consumer-class.html#_re_scores
Bio.Compass._Consumer.scores	Bio.Compass._Consumer-class.html#scores
Bio.Compass._Consumer.threshold	Bio.Compass._Consumer-class.html#threshold
Bio.Compass._Consumer.hit_alignment	Bio.Compass._Consumer-class.html#hit_alignment
Bio.Compass._Consumer._re_start	Bio.Compass._Consumer-class.html#_re_start
Bio.Compass._Consumer._re_lengths	Bio.Compass._Consumer-class.html#_re_lengths
Bio.Compass._Consumer.__init__	Bio.Compass._Consumer-class.html#__init__
Bio.Compass._Consumer.names	Bio.Compass._Consumer-class.html#names
Bio.Compass._Scanner	Bio.Compass._Scanner-class.html
Bio.Compass._Scanner.feed	Bio.Compass._Scanner-class.html#feed
Bio.Compass._Scanner._scan_lengths	Bio.Compass._Scanner-class.html#_scan_lengths
Bio.Compass._Scanner._scan_profilewidth	Bio.Compass._Scanner-class.html#_scan_profilewidth
Bio.Compass._Scanner._scan_names	Bio.Compass._Scanner-class.html#_scan_names
Bio.Compass._Scanner._scan_record	Bio.Compass._Scanner-class.html#_scan_record
Bio.Compass._Scanner._scan_scores	Bio.Compass._Scanner-class.html#_scan_scores
Bio.Compass._Scanner._scan_alignment	Bio.Compass._Scanner-class.html#_scan_alignment
Bio.Compass._Scanner._scan_threshold	Bio.Compass._Scanner-class.html#_scan_threshold
Bio.Crystal.Chain	Bio.Crystal.Chain-class.html
Bio.Crystal.Chain.__getslice__	Bio.Crystal.Chain-class.html#__getslice__
Bio.Crystal.Chain.__str__	Bio.Crystal.Chain-class.html#__str__
Bio.Crystal.Chain.__radd__	Bio.Crystal.Chain-class.html#__radd__
Bio.Crystal.Chain.__iadd__	Bio.Crystal.Chain-class.html#__iadd__
Bio.Crystal.Chain.__init__	Bio.Crystal.Chain-class.html#__init__
Bio.Crystal.Chain.index	Bio.Crystal.Chain-class.html#index
Bio.Crystal.Chain.__delslice__	Bio.Crystal.Chain-class.html#__delslice__
Bio.Crystal.Chain.__contains__	Bio.Crystal.Chain-class.html#__contains__
Bio.Crystal.Chain.append	Bio.Crystal.Chain-class.html#append
Bio.Crystal.Chain.__len__	Bio.Crystal.Chain-class.html#__len__
Bio.Crystal.Chain.__ne__	Bio.Crystal.Chain-class.html#__ne__
Bio.Crystal.Chain.__getitem__	Bio.Crystal.Chain-class.html#__getitem__
Bio.Crystal.Chain.__delitem__	Bio.Crystal.Chain-class.html#__delitem__
Bio.Crystal.Chain.__setitem__	Bio.Crystal.Chain-class.html#__setitem__
Bio.Crystal.Chain.__add__	Bio.Crystal.Chain-class.html#__add__
Bio.Crystal.Chain.validate	Bio.Crystal.Chain-class.html#validate
Bio.Crystal.Chain.__eq__	Bio.Crystal.Chain-class.html#__eq__
Bio.Crystal.Chain.count	Bio.Crystal.Chain-class.html#count
Bio.Crystal.Chain.insert	Bio.Crystal.Chain-class.html#insert
Bio.Crystal.Chain.__setslice__	Bio.Crystal.Chain-class.html#__setslice__
Bio.Crystal.Chain.remove	Bio.Crystal.Chain-class.html#remove
Bio.Crystal.Chain.validate_element	Bio.Crystal.Chain-class.html#validate_element
Bio.Crystal.Crystal	Bio.Crystal.Crystal-class.html
Bio.Crystal.Crystal.__delitem__	Bio.Crystal.Crystal-class.html#__delitem__
Bio.Crystal.Crystal.fix	Bio.Crystal.Crystal-class.html#fix
Bio.Crystal.Crystal.setdefault	Bio.Crystal.Crystal-class.html#setdefault
Bio.Crystal.Crystal.__getitem__	Bio.Crystal.Crystal-class.html#__getitem__
Bio.Crystal.Crystal.get	Bio.Crystal.Crystal-class.html#get
Bio.Crystal.Crystal.keys	Bio.Crystal.Crystal-class.html#keys
Bio.Crystal.Crystal.items	Bio.Crystal.Crystal-class.html#items
Bio.Crystal.Crystal.__str__	Bio.Crystal.Crystal-class.html#__str__
Bio.Crystal.Crystal.__setitem__	Bio.Crystal.Crystal-class.html#__setitem__
Bio.Crystal.Crystal.has_key	Bio.Crystal.Crystal-class.html#has_key
Bio.Crystal.Crystal.tostring	Bio.Crystal.Crystal-class.html#tostring
Bio.Crystal.Crystal.__repr__	Bio.Crystal.Crystal-class.html#__repr__
Bio.Crystal.Crystal.__init__	Bio.Crystal.Crystal-class.html#__init__
Bio.Crystal.Crystal.popitem	Bio.Crystal.Crystal-class.html#popitem
Bio.Crystal.Crystal.values	Bio.Crystal.Crystal-class.html#values
Bio.Crystal.Crystal.copy	Bio.Crystal.Crystal-class.html#copy
Bio.Crystal.Crystal.clear	Bio.Crystal.Crystal-class.html#clear
Bio.Crystal.Crystal.__len__	Bio.Crystal.Crystal-class.html#__len__
Bio.Crystal.CrystalError	Bio.Crystal.CrystalError-class.html
Bio.Crystal.Hetero	Bio.Crystal.Hetero-class.html
Bio.Crystal.Hetero.__ne__	Bio.Crystal.Hetero-class.html#__ne__
Bio.Crystal.Hetero.__str__	Bio.Crystal.Hetero-class.html#__str__
Bio.Crystal.Hetero.__len__	Bio.Crystal.Hetero-class.html#__len__
Bio.Crystal.Hetero.__repr__	Bio.Crystal.Hetero-class.html#__repr__
Bio.Crystal.Hetero.__eq__	Bio.Crystal.Hetero-class.html#__eq__
Bio.Crystal.Hetero.__init__	Bio.Crystal.Hetero-class.html#__init__
Bio.Data.CodonTable.AmbiguousCodonTable	Bio.Data.CodonTable.AmbiguousCodonTable-class.html
Bio.Data.CodonTable.CodonTable.forward_table	Bio.Data.CodonTable.CodonTable-class.html#forward_table
Bio.Data.CodonTable.CodonTable.__str__	Bio.Data.CodonTable.CodonTable-class.html#__str__
Bio.Data.CodonTable.CodonTable.stop_codons	Bio.Data.CodonTable.CodonTable-class.html#stop_codons
Bio.Data.CodonTable.AmbiguousCodonTable.__getattr__	Bio.Data.CodonTable.AmbiguousCodonTable-class.html#__getattr__
Bio.Data.CodonTable.CodonTable.start_codons	Bio.Data.CodonTable.CodonTable-class.html#start_codons
Bio.Data.CodonTable.CodonTable.protein_alphabet	Bio.Data.CodonTable.CodonTable-class.html#protein_alphabet
Bio.Data.CodonTable.CodonTable.back_table	Bio.Data.CodonTable.CodonTable-class.html#back_table
Bio.Data.CodonTable.CodonTable.nucleotide_alphabet	Bio.Data.CodonTable.CodonTable-class.html#nucleotide_alphabet
Bio.Data.CodonTable.AmbiguousCodonTable.__init__	Bio.Data.CodonTable.AmbiguousCodonTable-class.html#__init__
Bio.Data.CodonTable.AmbiguousForwardTable	Bio.Data.CodonTable.AmbiguousForwardTable-class.html
Bio.Data.CodonTable.AmbiguousForwardTable.__init__	Bio.Data.CodonTable.AmbiguousForwardTable-class.html#__init__
Bio.Data.CodonTable.AmbiguousForwardTable.__getitem__	Bio.Data.CodonTable.AmbiguousForwardTable-class.html#__getitem__
Bio.Data.CodonTable.AmbiguousForwardTable.get	Bio.Data.CodonTable.AmbiguousForwardTable-class.html#get
Bio.Data.CodonTable.CodonTable	Bio.Data.CodonTable.CodonTable-class.html
Bio.Data.CodonTable.CodonTable.forward_table	Bio.Data.CodonTable.CodonTable-class.html#forward_table
Bio.Data.CodonTable.CodonTable.__str__	Bio.Data.CodonTable.CodonTable-class.html#__str__
Bio.Data.CodonTable.CodonTable.stop_codons	Bio.Data.CodonTable.CodonTable-class.html#stop_codons
Bio.Data.CodonTable.CodonTable.start_codons	Bio.Data.CodonTable.CodonTable-class.html#start_codons
Bio.Data.CodonTable.CodonTable.protein_alphabet	Bio.Data.CodonTable.CodonTable-class.html#protein_alphabet
Bio.Data.CodonTable.CodonTable.back_table	Bio.Data.CodonTable.CodonTable-class.html#back_table
Bio.Data.CodonTable.CodonTable.nucleotide_alphabet	Bio.Data.CodonTable.CodonTable-class.html#nucleotide_alphabet
Bio.Data.CodonTable.CodonTable.__init__	Bio.Data.CodonTable.CodonTable-class.html#__init__
Bio.Data.CodonTable.NCBICodonTable	Bio.Data.CodonTable.NCBICodonTable-class.html
Bio.Data.CodonTable.CodonTable.forward_table	Bio.Data.CodonTable.CodonTable-class.html#forward_table
Bio.Data.CodonTable.CodonTable.__str__	Bio.Data.CodonTable.CodonTable-class.html#__str__
Bio.Data.CodonTable.CodonTable.stop_codons	Bio.Data.CodonTable.CodonTable-class.html#stop_codons
Bio.Data.CodonTable.CodonTable.start_codons	Bio.Data.CodonTable.CodonTable-class.html#start_codons
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet	Bio.Data.CodonTable.NCBICodonTable-class.html#protein_alphabet
Bio.Data.CodonTable.CodonTable.back_table	Bio.Data.CodonTable.CodonTable-class.html#back_table
Bio.Data.CodonTable.NCBICodonTable.nucleotide_alphabet	Bio.Data.CodonTable.NCBICodonTable-class.html#nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.__init__	Bio.Data.CodonTable.NCBICodonTable-class.html#__init__
Bio.Data.CodonTable.NCBICodonTableDNA	Bio.Data.CodonTable.NCBICodonTableDNA-class.html
Bio.Data.CodonTable.CodonTable.forward_table	Bio.Data.CodonTable.CodonTable-class.html#forward_table
Bio.Data.CodonTable.CodonTable.__str__	Bio.Data.CodonTable.CodonTable-class.html#__str__
Bio.Data.CodonTable.CodonTable.stop_codons	Bio.Data.CodonTable.CodonTable-class.html#stop_codons
Bio.Data.CodonTable.CodonTable.start_codons	Bio.Data.CodonTable.CodonTable-class.html#start_codons
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet	Bio.Data.CodonTable.NCBICodonTable-class.html#protein_alphabet
Bio.Data.CodonTable.CodonTable.back_table	Bio.Data.CodonTable.CodonTable-class.html#back_table
Bio.Data.CodonTable.NCBICodonTableDNA.nucleotide_alphabet	Bio.Data.CodonTable.NCBICodonTableDNA-class.html#nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.__init__	Bio.Data.CodonTable.NCBICodonTable-class.html#__init__
Bio.Data.CodonTable.NCBICodonTableRNA	Bio.Data.CodonTable.NCBICodonTableRNA-class.html
Bio.Data.CodonTable.CodonTable.forward_table	Bio.Data.CodonTable.CodonTable-class.html#forward_table
Bio.Data.CodonTable.CodonTable.__str__	Bio.Data.CodonTable.CodonTable-class.html#__str__
Bio.Data.CodonTable.CodonTable.stop_codons	Bio.Data.CodonTable.CodonTable-class.html#stop_codons
Bio.Data.CodonTable.CodonTable.start_codons	Bio.Data.CodonTable.CodonTable-class.html#start_codons
Bio.Data.CodonTable.NCBICodonTable.protein_alphabet	Bio.Data.CodonTable.NCBICodonTable-class.html#protein_alphabet
Bio.Data.CodonTable.CodonTable.back_table	Bio.Data.CodonTable.CodonTable-class.html#back_table
Bio.Data.CodonTable.NCBICodonTableRNA.nucleotide_alphabet	Bio.Data.CodonTable.NCBICodonTableRNA-class.html#nucleotide_alphabet
Bio.Data.CodonTable.NCBICodonTable.__init__	Bio.Data.CodonTable.NCBICodonTable-class.html#__init__
Bio.Data.CodonTable.TranslationError	Bio.Data.CodonTable.TranslationError-class.html
Bio.DocSQL.Create	Bio.DocSQL.Create-class.html
Bio.DocSQL.Query.suffix	Bio.DocSQL.Query-class.html#suffix
Bio.DocSQL.Query.dump	Bio.DocSQL.Query-class.html#dump
Bio.DocSQL.Query.prefix	Bio.DocSQL.Query-class.html#prefix
Bio.DocSQL.Query.message	Bio.DocSQL.Query-class.html#message
Bio.DocSQL.Create.__init__	Bio.DocSQL.Create-class.html#__init__
Bio.DocSQL.QuerySingle.cursor	Bio.DocSQL.QuerySingle-class.html#cursor
Bio.DocSQL.QueryRow.__setattr__	Bio.DocSQL.QueryRow-class.html#__setattr__
Bio.DocSQL.QuerySingle.ignore_warnings	Bio.DocSQL.QuerySingle-class.html#ignore_warnings
Bio.DocSQL.QueryRow.__getattr__	Bio.DocSQL.QueryRow-class.html#__getattr__
Bio.DocSQL.Query.MSG_FAILURE	Bio.DocSQL.Query-class.html#MSG_FAILURE
Bio.DocSQL.Query.__iter__	Bio.DocSQL.Query-class.html#__iter__
Bio.DocSQL.Query.error_message	Bio.DocSQL.Query-class.html#error_message
Bio.DocSQL.Query.row_class	Bio.DocSQL.QueryRow-class.html
Bio.DocSQL.Query.MSG_SUCCESS	Bio.DocSQL.Query-class.html#MSG_SUCCESS
Bio.DocSQL.Query.__repr__	Bio.DocSQL.Query-class.html#__repr__
Bio.DocSQL.Insert	Bio.DocSQL.Insert-class.html
Bio.DocSQL.Query.suffix	Bio.DocSQL.Query-class.html#suffix
Bio.DocSQL.Query.dump	Bio.DocSQL.Query-class.html#dump
Bio.DocSQL.Insert.MSG_INTEGRITY_ERROR	Bio.DocSQL.Insert-class.html#MSG_INTEGRITY_ERROR
Bio.DocSQL.Query.prefix	Bio.DocSQL.Query-class.html#prefix
Bio.DocSQL.Query.message	Bio.DocSQL.Query-class.html#message
Bio.DocSQL.Insert.__init__	Bio.DocSQL.Insert-class.html#__init__
Bio.DocSQL.QuerySingle.cursor	Bio.DocSQL.QuerySingle-class.html#cursor
Bio.DocSQL.QueryRow.__setattr__	Bio.DocSQL.QueryRow-class.html#__setattr__
Bio.DocSQL.QuerySingle.ignore_warnings	Bio.DocSQL.QuerySingle-class.html#ignore_warnings
Bio.DocSQL.QueryRow.__getattr__	Bio.DocSQL.QueryRow-class.html#__getattr__
Bio.DocSQL.Query.MSG_FAILURE	Bio.DocSQL.Query-class.html#MSG_FAILURE
Bio.DocSQL.Query.__iter__	Bio.DocSQL.Query-class.html#__iter__
Bio.DocSQL.Query.error_message	Bio.DocSQL.Query-class.html#error_message
Bio.DocSQL.Query.row_class	Bio.DocSQL.QueryRow-class.html
Bio.DocSQL.Query.MSG_SUCCESS	Bio.DocSQL.Query-class.html#MSG_SUCCESS
Bio.DocSQL.Query.__repr__	Bio.DocSQL.Query-class.html#__repr__
Bio.DocSQL.IterationCursor	Bio.DocSQL.IterationCursor-class.html
Bio.DocSQL.IterationCursor.next	Bio.DocSQL.IterationCursor-class.html#next
Bio.DocSQL.IterationCursor.__init__	Bio.DocSQL.IterationCursor-class.html#__init__
Bio.DocSQL.NoInsertionError	Bio.DocSQL.NoInsertionError-class.html
Bio.DocSQL.Query	Bio.DocSQL.Query-class.html
Bio.DocSQL.Query.suffix	Bio.DocSQL.Query-class.html#suffix
Bio.DocSQL.Query.dump	Bio.DocSQL.Query-class.html#dump
Bio.DocSQL.Query.prefix	Bio.DocSQL.Query-class.html#prefix
Bio.DocSQL.Query.message	Bio.DocSQL.Query-class.html#message
Bio.DocSQL.Query.__init__	Bio.DocSQL.Query-class.html#__init__
Bio.DocSQL.Query.row_class	Bio.DocSQL.QueryRow-class.html
Bio.DocSQL.Query.MSG_FAILURE	Bio.DocSQL.Query-class.html#MSG_FAILURE
Bio.DocSQL.Query.__iter__	Bio.DocSQL.Query-class.html#__iter__
Bio.DocSQL.Query.error_message	Bio.DocSQL.Query-class.html#error_message
Bio.DocSQL.Query.cursor	Bio.DocSQL.Query-class.html#cursor
Bio.DocSQL.Query.MSG_SUCCESS	Bio.DocSQL.Query-class.html#MSG_SUCCESS
Bio.DocSQL.Query.__repr__	Bio.DocSQL.Query-class.html#__repr__
Bio.DocSQL.QueryAll	Bio.DocSQL.QueryAll-class.html
Bio.DocSQL.Query.suffix	Bio.DocSQL.Query-class.html#suffix
Bio.DocSQL.Query.cursor	Bio.DocSQL.Query-class.html#cursor
Bio.DocSQL.Query.prefix	Bio.DocSQL.Query-class.html#prefix
Bio.DocSQL.Query.MSG_FAILURE	Bio.DocSQL.Query-class.html#MSG_FAILURE
Bio.DocSQL.QueryAll.__init__	Bio.DocSQL.QueryAll-class.html#__init__
Bio.DocSQL.QueryAll.process_row	Bio.DocSQL.QueryAll-class.html#process_row
Bio.DocSQL.Query.message	Bio.DocSQL.Query-class.html#message
Bio.DocSQL.Query.dump	Bio.DocSQL.Query-class.html#dump
Bio.DocSQL.Query.error_message	Bio.DocSQL.Query-class.html#error_message
Bio.DocSQL.Query.row_class	Bio.DocSQL.QueryRow-class.html
Bio.DocSQL.Query.MSG_SUCCESS	Bio.DocSQL.Query-class.html#MSG_SUCCESS
Bio.DocSQL.QueryAllFirstItem	Bio.DocSQL.QueryAllFirstItem-class.html
Bio.DocSQL.Query.suffix	Bio.DocSQL.Query-class.html#suffix
Bio.DocSQL.Query.cursor	Bio.DocSQL.Query-class.html#cursor
Bio.DocSQL.Query.prefix	Bio.DocSQL.Query-class.html#prefix
Bio.DocSQL.Query.MSG_FAILURE	Bio.DocSQL.Query-class.html#MSG_FAILURE
Bio.DocSQL.QueryAll.__init__	Bio.DocSQL.QueryAll-class.html#__init__
Bio.DocSQL.QueryAllFirstItem.process_row	Bio.DocSQL.QueryAllFirstItem-class.html#process_row
Bio.DocSQL.Query.message	Bio.DocSQL.Query-class.html#message
Bio.DocSQL.Query.dump	Bio.DocSQL.Query-class.html#dump
Bio.DocSQL.Query.error_message	Bio.DocSQL.Query-class.html#error_message
Bio.DocSQL.Query.row_class	Bio.DocSQL.QueryRow-class.html
Bio.DocSQL.Query.MSG_SUCCESS	Bio.DocSQL.Query-class.html#MSG_SUCCESS
Bio.DocSQL.QueryGeneric	Bio.DocSQL.QueryGeneric-class.html
Bio.DocSQL.Query.suffix	Bio.DocSQL.Query-class.html#suffix
Bio.DocSQL.Query.dump	Bio.DocSQL.Query-class.html#dump
Bio.DocSQL.Query.prefix	Bio.DocSQL.Query-class.html#prefix
Bio.DocSQL.Query.message	Bio.DocSQL.Query-class.html#message
Bio.DocSQL.QueryGeneric.__init__	Bio.DocSQL.QueryGeneric-class.html#__init__
Bio.DocSQL.Query.row_class	Bio.DocSQL.QueryRow-class.html
Bio.DocSQL.Query.MSG_FAILURE	Bio.DocSQL.Query-class.html#MSG_FAILURE
Bio.DocSQL.Query.__iter__	Bio.DocSQL.Query-class.html#__iter__
Bio.DocSQL.Query.error_message	Bio.DocSQL.Query-class.html#error_message
Bio.DocSQL.Query.cursor	Bio.DocSQL.Query-class.html#cursor
Bio.DocSQL.Query.MSG_SUCCESS	Bio.DocSQL.Query-class.html#MSG_SUCCESS
Bio.DocSQL.Query.__repr__	Bio.DocSQL.Query-class.html#__repr__
Bio.DocSQL.QueryRow	Bio.DocSQL.QueryRow-class.html
Bio.DocSQL.QueryRow.__setattr__	Bio.DocSQL.QueryRow-class.html#__setattr__
Bio.DocSQL.QueryRow.__getattr__	Bio.DocSQL.QueryRow-class.html#__getattr__
Bio.DocSQL.QueryRow.__init__	Bio.DocSQL.QueryRow-class.html#__init__
Bio.DocSQL.QuerySingle	Bio.DocSQL.QuerySingle-class.html
Bio.DocSQL.Query.suffix	Bio.DocSQL.Query-class.html#suffix
Bio.DocSQL.Query.dump	Bio.DocSQL.Query-class.html#dump
Bio.DocSQL.Query.prefix	Bio.DocSQL.Query-class.html#prefix
Bio.DocSQL.Query.message	Bio.DocSQL.Query-class.html#message
Bio.DocSQL.QuerySingle.__init__	Bio.DocSQL.QuerySingle-class.html#__init__
Bio.DocSQL.QuerySingle.cursor	Bio.DocSQL.QuerySingle-class.html#cursor
Bio.DocSQL.QueryRow.__setattr__	Bio.DocSQL.QueryRow-class.html#__setattr__
Bio.DocSQL.QuerySingle.ignore_warnings	Bio.DocSQL.QuerySingle-class.html#ignore_warnings
Bio.DocSQL.QueryRow.__getattr__	Bio.DocSQL.QueryRow-class.html#__getattr__
Bio.DocSQL.Query.MSG_FAILURE	Bio.DocSQL.Query-class.html#MSG_FAILURE
Bio.DocSQL.Query.__iter__	Bio.DocSQL.Query-class.html#__iter__
Bio.DocSQL.Query.error_message	Bio.DocSQL.Query-class.html#error_message
Bio.DocSQL.Query.row_class	Bio.DocSQL.QueryRow-class.html
Bio.DocSQL.Query.MSG_SUCCESS	Bio.DocSQL.Query-class.html#MSG_SUCCESS
Bio.DocSQL.Query.__repr__	Bio.DocSQL.Query-class.html#__repr__
Bio.DocSQL.Update	Bio.DocSQL.Update-class.html
Bio.DocSQL.Query.suffix	Bio.DocSQL.Query-class.html#suffix
Bio.DocSQL.Query.dump	Bio.DocSQL.Query-class.html#dump
Bio.DocSQL.Query.prefix	Bio.DocSQL.Query-class.html#prefix
Bio.DocSQL.Query.message	Bio.DocSQL.Query-class.html#message
Bio.DocSQL.Create.__init__	Bio.DocSQL.Create-class.html#__init__
Bio.DocSQL.QuerySingle.cursor	Bio.DocSQL.QuerySingle-class.html#cursor
Bio.DocSQL.QueryRow.__setattr__	Bio.DocSQL.QueryRow-class.html#__setattr__
Bio.DocSQL.QuerySingle.ignore_warnings	Bio.DocSQL.QuerySingle-class.html#ignore_warnings
Bio.DocSQL.QueryRow.__getattr__	Bio.DocSQL.QueryRow-class.html#__getattr__
Bio.DocSQL.Query.MSG_FAILURE	Bio.DocSQL.Query-class.html#MSG_FAILURE
Bio.DocSQL.Query.__iter__	Bio.DocSQL.Query-class.html#__iter__
Bio.DocSQL.Query.error_message	Bio.DocSQL.Query-class.html#error_message
Bio.DocSQL.Query.row_class	Bio.DocSQL.QueryRow-class.html
Bio.DocSQL.Query.MSG_SUCCESS	Bio.DocSQL.Query-class.html#MSG_SUCCESS
Bio.DocSQL.Query.__repr__	Bio.DocSQL.Query-class.html#__repr__
Bio.Emboss.Applications.DiffseqCommandline	Bio.Emboss.Applications.DiffseqCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.DiffseqCommandline.__init__	Bio.Emboss.Applications.DiffseqCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.EConsenseCommandline	Bio.Emboss.Applications.EConsenseCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.EConsenseCommandline.__init__	Bio.Emboss.Applications.EConsenseCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.EInvertedCommandline	Bio.Emboss.Applications.EInvertedCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.EInvertedCommandline.__init__	Bio.Emboss.Applications.EInvertedCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.ENeighborCommandline	Bio.Emboss.Applications.ENeighborCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.ENeighborCommandline.__init__	Bio.Emboss.Applications.ENeighborCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.EProtDistCommandline	Bio.Emboss.Applications.EProtDistCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.EProtDistCommandline.__init__	Bio.Emboss.Applications.EProtDistCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.EProtParsCommandline	Bio.Emboss.Applications.EProtParsCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.EProtParsCommandline.__init__	Bio.Emboss.Applications.EProtParsCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.ESeqBootCommandline	Bio.Emboss.Applications.ESeqBootCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.ESeqBootCommandline.__init__	Bio.Emboss.Applications.ESeqBootCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.ETandemCommandline	Bio.Emboss.Applications.ETandemCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.ETandemCommandline.__init__	Bio.Emboss.Applications.ETandemCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.Est2GenomeCommandline	Bio.Emboss.Applications.Est2GenomeCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.Est2GenomeCommandline.__init__	Bio.Emboss.Applications.Est2GenomeCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.FConsenseCommandline	Bio.Emboss.Applications.FConsenseCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.FConsenseCommandline.__init__	Bio.Emboss.Applications.FConsenseCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.FDNADistCommandline	Bio.Emboss.Applications.FDNADistCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.FDNADistCommandline.__init__	Bio.Emboss.Applications.FDNADistCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.FDNAParsCommandline	Bio.Emboss.Applications.FDNAParsCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.FDNAParsCommandline.__init__	Bio.Emboss.Applications.FDNAParsCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.FNeighborCommandline	Bio.Emboss.Applications.FNeighborCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.FNeighborCommandline.__init__	Bio.Emboss.Applications.FNeighborCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.FProtDistCommandline	Bio.Emboss.Applications.FProtDistCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.FProtDistCommandline.__init__	Bio.Emboss.Applications.FProtDistCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.FProtParsCommandline	Bio.Emboss.Applications.FProtParsCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.FProtParsCommandline.__init__	Bio.Emboss.Applications.FProtParsCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.FSeqBootCommandline	Bio.Emboss.Applications.FSeqBootCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.FSeqBootCommandline.__init__	Bio.Emboss.Applications.FSeqBootCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.FTreeDistCommandline	Bio.Emboss.Applications.FTreeDistCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.FTreeDistCommandline.__init__	Bio.Emboss.Applications.FTreeDistCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.FuzznucCommandline	Bio.Emboss.Applications.FuzznucCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.FuzznucCommandline.__init__	Bio.Emboss.Applications.FuzznucCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.IepCommandline	Bio.Emboss.Applications.IepCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.IepCommandline.__init__	Bio.Emboss.Applications.IepCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.NeedleCommandline	Bio.Emboss.Applications.NeedleCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.NeedleCommandline.__init__	Bio.Emboss.Applications.NeedleCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.PalindromeCommandline	Bio.Emboss.Applications.PalindromeCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.PalindromeCommandline.__init__	Bio.Emboss.Applications.PalindromeCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.Primer3Commandline	Bio.Emboss.Applications.Primer3Commandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.Primer3Commandline.__init__	Bio.Emboss.Applications.Primer3Commandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.PrimerSearchCommandline	Bio.Emboss.Applications.PrimerSearchCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Emboss.Applications.PrimerSearchCommandline.set_parameter	Bio.Emboss.Applications.PrimerSearchCommandline-class.html#set_parameter
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.PrimerSearchCommandline.__init__	Bio.Emboss.Applications.PrimerSearchCommandline-class.html#__init__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Emboss.Applications.SeqretCommandline	Bio.Emboss.Applications.SeqretCommandline-class.html
Bio.Emboss.Applications.SeqretCommandline._validate	Bio.Emboss.Applications.SeqretCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.SeqretCommandline.__init__	Bio.Emboss.Applications.SeqretCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.TranalignCommandline	Bio.Emboss.Applications.TranalignCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.TranalignCommandline.__init__	Bio.Emboss.Applications.TranalignCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications.WaterCommandline	Bio.Emboss.Applications.WaterCommandline-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications.WaterCommandline.__init__	Bio.Emboss.Applications.WaterCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications._EmbossCommandLine	Bio.Emboss.Applications._EmbossCommandLine-class.html
Bio.Emboss.Applications._EmbossCommandLine._validate	Bio.Emboss.Applications._EmbossCommandLine-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications._EmbossCommandLine.__init__	Bio.Emboss.Applications._EmbossCommandLine-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Applications._EmbossMinimalCommandLine	Bio.Emboss.Applications._EmbossMinimalCommandLine-class.html
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Emboss.Applications._EmbossMinimalCommandLine.__init__	Bio.Emboss.Applications._EmbossMinimalCommandLine-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Emboss.Primer3.Primers	Bio.Emboss.Primer3.Primers-class.html
Bio.Emboss.Primer3.Primers.__init__	Bio.Emboss.Primer3.Primers-class.html#__init__
Bio.Emboss.Primer3.Record	Bio.Emboss.Primer3.Record-class.html
Bio.Emboss.Primer3.Record.__init__	Bio.Emboss.Primer3.Record-class.html#__init__
Bio.Emboss.PrimerSearch.Amplifier	Bio.Emboss.PrimerSearch.Amplifier-class.html
Bio.Emboss.PrimerSearch.Amplifier.__init__	Bio.Emboss.PrimerSearch.Amplifier-class.html#__init__
Bio.Emboss.PrimerSearch.InputRecord	Bio.Emboss.PrimerSearch.InputRecord-class.html
Bio.Emboss.PrimerSearch.InputRecord.add_primer_set	Bio.Emboss.PrimerSearch.InputRecord-class.html#add_primer_set
Bio.Emboss.PrimerSearch.InputRecord.__str__	Bio.Emboss.PrimerSearch.InputRecord-class.html#__str__
Bio.Emboss.PrimerSearch.InputRecord.__init__	Bio.Emboss.PrimerSearch.InputRecord-class.html#__init__
Bio.Emboss.PrimerSearch.OutputRecord	Bio.Emboss.PrimerSearch.OutputRecord-class.html
Bio.Emboss.PrimerSearch.OutputRecord.__init__	Bio.Emboss.PrimerSearch.OutputRecord-class.html#__init__
Bio.Entrez.Parser.DataHandler	Bio.Entrez.Parser.DataHandler-class.html
Bio.Entrez.Parser.DataHandler.parse	Bio.Entrez.Parser.DataHandler-class.html#parse
Bio.Entrez.Parser.DataHandler.run	Bio.Entrez.Parser.DataHandler-class.html#run
Bio.Entrez.Parser.DataHandler.endElement	Bio.Entrez.Parser.DataHandler-class.html#endElement
Bio.Entrez.Parser.DataHandler.startElement	Bio.Entrez.Parser.DataHandler-class.html#startElement
Bio.Entrez.Parser.DataHandler.external_entity_ref_handler	Bio.Entrez.Parser.DataHandler-class.html#external_entity_ref_handler
Bio.Entrez.Parser.DataHandler.characters	Bio.Entrez.Parser.DataHandler-class.html#characters
Bio.Entrez.Parser.DataHandler.elementDecl	Bio.Entrez.Parser.DataHandler-class.html#elementDecl
Bio.Entrez.Parser.DataHandler.__init__	Bio.Entrez.Parser.DataHandler-class.html#__init__
Bio.Entrez.Parser.DictionaryElement	Bio.Entrez.Parser.DictionaryElement-class.html
Bio.Entrez.Parser.IntegerElement	Bio.Entrez.Parser.IntegerElement-class.html
Bio.Entrez.Parser.ListElement	Bio.Entrez.Parser.ListElement-class.html
Bio.Entrez.Parser.StringElement	Bio.Entrez.Parser.StringElement-class.html
Bio.Entrez.Parser.StructureElement	Bio.Entrez.Parser.StructureElement-class.html
Bio.Entrez.Parser.StructureElement.__init__	Bio.Entrez.Parser.StructureElement-class.html#__init__
Bio.Entrez.Parser.StructureElement.__setitem__	Bio.Entrez.Parser.StructureElement-class.html#__setitem__
Bio.Entrez.Parser.UnicodeElement	Bio.Entrez.Parser.UnicodeElement-class.html
Bio.Enzyme.DataRecord	Bio.Enzyme.DataRecord-class.html
Bio.Enzyme.DataRecord.__str__	Bio.Enzyme.DataRecord-class.html#__str__
Bio.Enzyme.DataRecord.__init__	Bio.Enzyme.DataRecord-class.html#__init__
Bio.Enzyme.EnzymeRecord	Bio.Enzyme.EnzymeRecord-class.html
Bio.Enzyme.EnzymeRecord.__str__	Bio.Enzyme.EnzymeRecord-class.html#__str__
Bio.Enzyme.EnzymeRecord.__repr__	Bio.Enzyme.EnzymeRecord-class.html#__repr__
Bio.Enzyme.EnzymeRecord.__init__	Bio.Enzyme.EnzymeRecord-class.html#__init__
Bio.Enzyme.Iterator	Bio.Enzyme.Iterator-class.html
Bio.Enzyme.Iterator.__iter__	Bio.Enzyme.Iterator-class.html#__iter__
Bio.Enzyme.Iterator.__init__	Bio.Enzyme.Iterator-class.html#__init__
Bio.Enzyme.Iterator.next	Bio.Enzyme.Iterator-class.html#next
Bio.Enzyme.RecordParser	Bio.Enzyme.RecordParser-class.html
Bio.Enzyme.RecordParser.parse	Bio.Enzyme.RecordParser-class.html#parse
Bio.ParserSupport.AbstractParser.parse_file	Bio.ParserSupport.AbstractParser-class.html#parse_file
Bio.ParserSupport.AbstractParser.parse_str	Bio.ParserSupport.AbstractParser-class.html#parse_str
Bio.Enzyme.RecordParser.__init__	Bio.Enzyme.RecordParser-class.html#__init__
Bio.Enzyme._RecordConsumer	Bio.Enzyme._RecordConsumer-class.html
Bio.Enzyme._RecordConsumer.comment	Bio.Enzyme._RecordConsumer-class.html#comment
Bio.ParserSupport.AbstractConsumer._unhandled	Bio.ParserSupport.AbstractConsumer-class.html#_unhandled
Bio.Enzyme._RecordConsumer.catalytic_activity	Bio.Enzyme._RecordConsumer-class.html#catalytic_activity
Bio.Enzyme._RecordConsumer.description	Bio.Enzyme._RecordConsumer-class.html#description
Bio.Enzyme._RecordConsumer.prosite_reference	Bio.Enzyme._RecordConsumer-class.html#prosite_reference
Bio.Enzyme._RecordConsumer.disease	Bio.Enzyme._RecordConsumer-class.html#disease
Bio.ParserSupport.AbstractConsumer.__getattr__	Bio.ParserSupport.AbstractConsumer-class.html#__getattr__
Bio.Enzyme._RecordConsumer.databank_reference	Bio.Enzyme._RecordConsumer-class.html#databank_reference
Bio.Enzyme._RecordConsumer.identification	Bio.Enzyme._RecordConsumer-class.html#identification
Bio.Enzyme._RecordConsumer.alternate_name	Bio.Enzyme._RecordConsumer-class.html#alternate_name
Bio.ParserSupport.AbstractConsumer._unhandled_section	Bio.ParserSupport.AbstractConsumer-class.html#_unhandled_section
Bio.Enzyme._RecordConsumer.__init__	Bio.Enzyme._RecordConsumer-class.html#__init__
Bio.Enzyme._RecordConsumer.cofactor	Bio.Enzyme._RecordConsumer-class.html#cofactor
Bio.Enzyme._Scanner	Bio.Enzyme._Scanner-class.html
Bio.Enzyme._Scanner.feed	Bio.Enzyme._Scanner-class.html#feed
Bio.Enzyme._Scanner._scan_record	Bio.Enzyme._Scanner-class.html#_scan_record
Bio.Enzyme._Scanner._scan_cc	Bio.Enzyme._Scanner-class.html#_scan_cc
Bio.Enzyme._Scanner._scan_de	Bio.Enzyme._Scanner-class.html#_scan_de
Bio.Enzyme._Scanner._scan_fns	Bio.Enzyme._Scanner-class.html#_scan_fns
Bio.Enzyme._Scanner._scan_di	Bio.Enzyme._Scanner-class.html#_scan_di
Bio.Enzyme._Scanner._scan_line	Bio.Enzyme._Scanner-class.html#_scan_line
Bio.Enzyme._Scanner._scan_id	Bio.Enzyme._Scanner-class.html#_scan_id
Bio.Enzyme._Scanner._scan_dr	Bio.Enzyme._Scanner-class.html#_scan_dr
Bio.Enzyme._Scanner._scan_an	Bio.Enzyme._Scanner-class.html#_scan_an
Bio.Enzyme._Scanner._scan_ca	Bio.Enzyme._Scanner-class.html#_scan_ca
Bio.Enzyme._Scanner._scan_cf	Bio.Enzyme._Scanner-class.html#_scan_cf
Bio.Enzyme._Scanner._scan_terminator	Bio.Enzyme._Scanner-class.html#_scan_terminator
Bio.Enzyme._Scanner._scan_pr	Bio.Enzyme._Scanner-class.html#_scan_pr
Bio.ExPASy.Enzyme.Record	Bio.ExPASy.Enzyme.Record-class.html
Bio.ExPASy.Enzyme.Record.__str__	Bio.ExPASy.Enzyme.Record-class.html#__str__
Bio.ExPASy.Enzyme.Record.__init__	Bio.ExPASy.Enzyme.Record-class.html#__init__
Bio.ExPASy.Enzyme.Record.__repr__	Bio.ExPASy.Enzyme.Record-class.html#__repr__
Bio.ExPASy.Prodoc.Record	Bio.ExPASy.Prodoc.Record-class.html
Bio.ExPASy.Prodoc.Record.__init__	Bio.ExPASy.Prodoc.Record-class.html#__init__
Bio.ExPASy.Prodoc.Reference	Bio.ExPASy.Prodoc.Reference-class.html
Bio.ExPASy.Prodoc.Reference.__init__	Bio.ExPASy.Prodoc.Reference-class.html#__init__
Bio.ExPASy.Prosite.Record	Bio.ExPASy.Prosite.Record-class.html
Bio.ExPASy.Prosite.Record.__init__	Bio.ExPASy.Prosite.Record-class.html#__init__
Bio.ExPASy.ScanProsite.ContentHandler	Bio.ExPASy.ScanProsite.ContentHandler-class.html
Bio.ExPASy.ScanProsite.ContentHandler.integers	Bio.ExPASy.ScanProsite.ContentHandler-class.html#integers
Bio.ExPASy.ScanProsite.ContentHandler.endElement	Bio.ExPASy.ScanProsite.ContentHandler-class.html#endElement
Bio.ExPASy.ScanProsite.ContentHandler.startElement	Bio.ExPASy.ScanProsite.ContentHandler-class.html#startElement
Bio.ExPASy.ScanProsite.ContentHandler.characters	Bio.ExPASy.ScanProsite.ContentHandler-class.html#characters
Bio.ExPASy.ScanProsite.ContentHandler.strings	Bio.ExPASy.ScanProsite.ContentHandler-class.html#strings
Bio.ExPASy.ScanProsite.ContentHandler.__init__	Bio.ExPASy.ScanProsite.ContentHandler-class.html#__init__
Bio.ExPASy.ScanProsite.Parser	Bio.ExPASy.ScanProsite.Parser-class.html
Bio.ExPASy.ScanProsite.Parser.feed	Bio.ExPASy.ScanProsite.Parser-class.html#feed
Bio.ExPASy.ScanProsite.Parser.__init__	Bio.ExPASy.ScanProsite.Parser-class.html#__init__
Bio.ExPASy.ScanProsite.Record	Bio.ExPASy.ScanProsite.Record-class.html
Bio.ExPASy.ScanProsite.Record.__init__	Bio.ExPASy.ScanProsite.Record-class.html#__init__
Bio.FSSP.FSSPAlignDict	Bio.FSSP.FSSPAlignDict-class.html
Bio.FSSP.FSSPAlignDict.sequence	Bio.FSSP.FSSPAlignDict-class.html#sequence
Bio.FSSP.FSSPAlignDict.__init__	Bio.FSSP.FSSPAlignDict-class.html#__init__
Bio.FSSP.FSSPAlignDict.fasta_mult_align	Bio.FSSP.FSSPAlignDict-class.html#fasta_mult_align
Bio.FSSP.FSSPAlignDict.abs	Bio.FSSP.FSSPAlignDict-class.html#abs
Bio.FSSP.FSSPAlignDict.build_resnum_list	Bio.FSSP.FSSPAlignDict-class.html#build_resnum_list
Bio.FSSP.FSSPAlignDict.pdb	Bio.FSSP.FSSPAlignDict-class.html#pdb
Bio.FSSP.FSSPAlignRec	Bio.FSSP.FSSPAlignRec-class.html
Bio.FSSP.FSSPAlignRec.pos_align_list2dict	Bio.FSSP.FSSPAlignRec-class.html#pos_align_list2dict
Bio.FSSP.FSSPAlignRec.add_align_list	Bio.FSSP.FSSPAlignRec-class.html#add_align_list
Bio.FSSP.FSSPAlignRec.__init__	Bio.FSSP.FSSPAlignRec-class.html#__init__
Bio.FSSP.FSSPHeader	Bio.FSSP.FSSPHeader-class.html
Bio.FSSP.FSSPHeader.fill_header	Bio.FSSP.FSSPHeader-class.html#fill_header
Bio.FSSP.FSSPHeader.__init__	Bio.FSSP.FSSPHeader-class.html#__init__
Bio.FSSP.FSSPSumDict	Bio.FSSP.FSSPSumDict-class.html
Bio.FSSP.FSSPSumRec	Bio.FSSP.FSSPSumRec-class.html
Bio.FSSP.FSSPSumRec.__str__	Bio.FSSP.FSSPSumRec-class.html#__str__
Bio.FSSP.FSSPSumRec.__repr__	Bio.FSSP.FSSPSumRec-class.html#__repr__
Bio.FSSP.FSSPSumRec.__init__	Bio.FSSP.FSSPSumRec-class.html#__init__
Bio.FSSP.FSSPTools.FSSPAlign	Bio.FSSP.FSSPTools.FSSPAlign-class.html
Bio.Align.Generic.Alignment.get_all_seqs	Bio.Align.Generic.Alignment-class.html#get_all_seqs
Bio.Align.Generic.Alignment.__getitem__	Bio.Align.Generic.Alignment-class.html#__getitem__
Bio.Align.Generic.Alignment.format	Bio.Align.Generic.Alignment-class.html#format
Bio.Align.Generic.Alignment.get_alignment_length	Bio.Align.Generic.Alignment-class.html#get_alignment_length
Bio.Align.Generic.Alignment.__str__	Bio.Align.Generic.Alignment-class.html#__str__
Bio.Align.Generic.Alignment.get_column	Bio.Align.Generic.Alignment-class.html#get_column
Bio.Align.Generic.Alignment.__format__	Bio.Align.Generic.Alignment-class.html#__format__
Bio.Align.Generic.Alignment.add_sequence	Bio.Align.Generic.Alignment-class.html#add_sequence
Bio.Align.Generic.Alignment.__len__	Bio.Align.Generic.Alignment-class.html#__len__
Bio.Align.Generic.Alignment.__iter__	Bio.Align.Generic.Alignment-class.html#__iter__
Bio.Align.Generic.Alignment.get_seq_by_num	Bio.Align.Generic.Alignment-class.html#get_seq_by_num
Bio.Align.Generic.Alignment._str_line	Bio.Align.Generic.Alignment-class.html#_str_line
Bio.Align.Generic.Alignment.__repr__	Bio.Align.Generic.Alignment-class.html#__repr__
Bio.FSSP.FSSPTools.FSSPAlign._add_numbering_table	Bio.FSSP.FSSPTools.FSSPAlign-class.html#_add_numbering_table
Bio.Align.Generic.Alignment.__init__	Bio.Align.Generic.Alignment-class.html#__init__
Bio.FSSP.FSSPTools.FSSPMultAlign	Bio.FSSP.FSSPTools.FSSPMultAlign-class.html
Bio.FSSP.FSSPTools.FSSPMultAlign.__init__	Bio.FSSP.FSSPTools.FSSPMultAlign-class.html#__init__
Bio.FSSP.PosAlign	Bio.FSSP.PosAlign-class.html
Bio.FSSP.PosAlign.__str__	Bio.FSSP.PosAlign-class.html#__str__
Bio.FSSP.PosAlign.__repr__	Bio.FSSP.PosAlign-class.html#__repr__
Bio.FSSP.PosAlign.__init__	Bio.FSSP.PosAlign-class.html#__init__
Bio.FSSP.fssp_rec.align	Bio.FSSP.fssp_rec.align-class.html
Bio.FSSP.fssp_rec.align.acc	Bio.FSSP.fssp_rec.align-class.html#acc
Bio.FSSP.fssp_rec.align.turn3	Bio.FSSP.fssp_rec.align-class.html#turn3
Bio.FSSP.fssp_rec.align.pdb_res_num	Bio.FSSP.fssp_rec.align-class.html#pdb_res_num
Bio.FSSP.fssp_rec.align.ss1	Bio.FSSP.fssp_rec.align-class.html#ss1
Bio.FSSP.fssp_rec.align.abs_res_num	Bio.FSSP.fssp_rec.align-class.html#abs_res_num
Bio.FSSP.fssp_rec.align.turn4	Bio.FSSP.fssp_rec.align-class.html#turn4
Bio.FSSP.fssp_rec.align.chain_id	Bio.FSSP.fssp_rec.align-class.html#chain_id
Bio.FSSP.fssp_rec.align.res_name	Bio.FSSP.fssp_rec.align-class.html#res_name
Bio.FSSP.fssp_rec.align.start_aa_list	Bio.FSSP.fssp_rec.align-class.html#start_aa_list
Bio.FSSP.fssp_rec.align.turn5	Bio.FSSP.fssp_rec.align-class.html#turn5
Bio.FSSP.fssp_rec.fff_rec	Bio.FSSP.fssp_rec.fff_rec-class.html
Bio.FSSP.fssp_rec.fff_rec.__getitem__	Bio.FSSP.fssp_rec.fff_rec-class.html#__getitem__
Bio.FSSP.fssp_rec.fff_rec.__getslice__	Bio.FSSP.fssp_rec.fff_rec-class.html#__getslice__
Bio.FSSP.fssp_rec.fff_rec.__str__	Bio.FSSP.fssp_rec.fff_rec-class.html#__str__
Bio.FSSP.fssp_rec.fff_rec.__len__	Bio.FSSP.fssp_rec.fff_rec-class.html#__len__
Bio.FSSP.fssp_rec.fff_rec.__init__	Bio.FSSP.fssp_rec.fff_rec-class.html#__init__
Bio.FSSP.fssp_rec.fff_rec.__repr__	Bio.FSSP.fssp_rec.fff_rec-class.html#__repr__
Bio.Fasta.FastaAlign.FastaAlignment	Bio.Fasta.FastaAlign.FastaAlignment-class.html
Bio.Align.Generic.Alignment.get_all_seqs	Bio.Align.Generic.Alignment-class.html#get_all_seqs
Bio.Align.Generic.Alignment.__getitem__	Bio.Align.Generic.Alignment-class.html#__getitem__
Bio.Align.Generic.Alignment.format	Bio.Align.Generic.Alignment-class.html#format
Bio.Align.Generic.Alignment.get_alignment_length	Bio.Align.Generic.Alignment-class.html#get_alignment_length
Bio.Fasta.FastaAlign.FastaAlignment.__str__	Bio.Fasta.FastaAlign.FastaAlignment-class.html#__str__
Bio.Align.Generic.Alignment.get_column	Bio.Align.Generic.Alignment-class.html#get_column
Bio.Align.Generic.Alignment.__format__	Bio.Align.Generic.Alignment-class.html#__format__
Bio.Align.Generic.Alignment.add_sequence	Bio.Align.Generic.Alignment-class.html#add_sequence
Bio.Align.Generic.Alignment.__len__	Bio.Align.Generic.Alignment-class.html#__len__
Bio.Align.Generic.Alignment.__iter__	Bio.Align.Generic.Alignment-class.html#__iter__
Bio.Align.Generic.Alignment.get_seq_by_num	Bio.Align.Generic.Alignment-class.html#get_seq_by_num
Bio.Align.Generic.Alignment._str_line	Bio.Align.Generic.Alignment-class.html#_str_line
Bio.Align.Generic.Alignment.__repr__	Bio.Align.Generic.Alignment-class.html#__repr__
Bio.Fasta.FastaAlign.FastaAlignment.__init__	Bio.Fasta.FastaAlign.FastaAlignment-class.html#__init__
Bio.Fasta.Iterator	Bio.Fasta.Iterator-class.html
Bio.Fasta.Iterator.__iter__	Bio.Fasta.Iterator-class.html#__iter__
Bio.Fasta.Iterator.__init__	Bio.Fasta.Iterator-class.html#__init__
Bio.Fasta.Iterator.next	Bio.Fasta.Iterator-class.html#next
Bio.Fasta.Record	Bio.Fasta.Record-class.html
Bio.Fasta.Record.__str__	Bio.Fasta.Record-class.html#__str__
Bio.Fasta.Record.__init__	Bio.Fasta.Record-class.html#__init__
Bio.Fasta.RecordParser	Bio.Fasta.RecordParser-class.html
Bio.Fasta.RecordParser.parse	Bio.Fasta.RecordParser-class.html#parse
Bio.Fasta.RecordParser.__init__	Bio.Fasta.RecordParser-class.html#__init__
Bio.Fasta.RecordParser.parse_string	Bio.Fasta.RecordParser-class.html#parse_string
Bio.Fasta.SequenceParser	Bio.Fasta.SequenceParser-class.html
Bio.Fasta.SequenceParser.parse	Bio.Fasta.SequenceParser-class.html#parse
Bio.Fasta.SequenceParser.__init__	Bio.Fasta.SequenceParser-class.html#__init__
Bio.Fasta.SequenceParser.parse_string	Bio.Fasta.SequenceParser-class.html#parse_string
Bio.File.SGMLHandle	Bio.File.SGMLHandle-class.html
Bio.File.SGMLHandle.read	Bio.File.SGMLHandle-class.html#read
Bio.File.SGMLHandle.readline	Bio.File.SGMLHandle-class.html#readline
Bio.File.SGMLHandle.readlines	Bio.File.SGMLHandle-class.html#readlines
Bio.File.SGMLHandle.__init__	Bio.File.SGMLHandle-class.html#__init__
Bio.File.SGMLHandle.__getattr__	Bio.File.SGMLHandle-class.html#__getattr__
Bio.File.SGMLStripper	Bio.File.SGMLStripper-class.html
Bio.File.SGMLStripper.MyParser	Bio.File.SGMLStripper.MyParser-class.html
Bio.File.SGMLStripper.__init__	Bio.File.SGMLStripper-class.html#__init__
Bio.File.SGMLStripper.strip	Bio.File.SGMLStripper-class.html#strip
Bio.File.SGMLStripper.MyParser	Bio.File.SGMLStripper.MyParser-class.html
Bio.File.SGMLStripper.MyParser.__init__	Bio.File.SGMLStripper.MyParser-class.html#__init__
Bio.File.SGMLStripper.MyParser.handle_data	Bio.File.SGMLStripper.MyParser-class.html#handle_data
Bio.File.UndoHandle	Bio.File.UndoHandle-class.html
Bio.File.UndoHandle.__exit__	Bio.File.UndoHandle-class.html#__exit__
Bio.File.UndoHandle.peekline	Bio.File.UndoHandle-class.html#peekline
Bio.File.UndoHandle.read	Bio.File.UndoHandle-class.html#read
Bio.File.UndoHandle.__enter__	Bio.File.UndoHandle-class.html#__enter__
Bio.File.UndoHandle.readlines	Bio.File.UndoHandle-class.html#readlines
Bio.File.UndoHandle.saveline	Bio.File.UndoHandle-class.html#saveline
Bio.File.UndoHandle.__getattr__	Bio.File.UndoHandle-class.html#__getattr__
Bio.File.UndoHandle.next	Bio.File.UndoHandle-class.html#next
Bio.File.UndoHandle.__iter__	Bio.File.UndoHandle-class.html#__iter__
Bio.File.UndoHandle.readline	Bio.File.UndoHandle-class.html#readline
Bio.File.UndoHandle.seek	Bio.File.UndoHandle-class.html#seek
Bio.File.UndoHandle.tell	Bio.File.UndoHandle-class.html#tell
Bio.File.UndoHandle.__init__	Bio.File.UndoHandle-class.html#__init__
Bio.FilteredReader.FilteredReader	Bio.FilteredReader.FilteredReader-class.html
Bio.FilteredReader.FilteredReader.read	Bio.FilteredReader.FilteredReader-class.html#read
Bio.FilteredReader.FilteredReader._get_len_expected	Bio.FilteredReader.FilteredReader-class.html#_get_len_expected
Bio.FilteredReader.FilteredReader.__getattr__	Bio.FilteredReader.FilteredReader-class.html#__getattr__
Bio.FilteredReader.FilteredReader.filter	Bio.FilteredReader.FilteredReader-class.html#filter
Bio.FilteredReader.FilteredReader.read_block	Bio.FilteredReader.FilteredReader-class.html#read_block
Bio.FilteredReader.FilteredReader.close	Bio.FilteredReader.FilteredReader-class.html#close
Bio.FilteredReader.FilteredReader.read_to_end	Bio.FilteredReader.FilteredReader-class.html#read_to_end
Bio.FilteredReader.FilteredReader.__init__	Bio.FilteredReader.FilteredReader-class.html#__init__
Bio.GA.Crossover.General.SafeFitnessCrossover	Bio.GA.Crossover.General.SafeFitnessCrossover-class.html
Bio.GA.Crossover.General.SafeFitnessCrossover.do_crossover	Bio.GA.Crossover.General.SafeFitnessCrossover-class.html#do_crossover
Bio.GA.Crossover.General.SafeFitnessCrossover.__init__	Bio.GA.Crossover.General.SafeFitnessCrossover-class.html#__init__
Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover	Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover-class.html
Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover._crossover	Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover-class.html#_crossover
Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover.do_crossover	Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover-class.html#do_crossover
Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover.__init__	Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover-class.html#__init__
Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover._generate_locs	Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover-class.html#_generate_locs
Bio.GA.Crossover.GeneralPoint.InterleaveCrossover	Bio.GA.Crossover.GeneralPoint.InterleaveCrossover-class.html
Bio.GA.Crossover.GeneralPoint.InterleaveCrossover._crossover	Bio.GA.Crossover.GeneralPoint.InterleaveCrossover-class.html#_crossover
Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover.do_crossover	Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover-class.html#do_crossover
Bio.GA.Crossover.GeneralPoint.InterleaveCrossover.__init__	Bio.GA.Crossover.GeneralPoint.InterleaveCrossover-class.html#__init__
Bio.GA.Crossover.GeneralPoint.InterleaveCrossover._generate_locs	Bio.GA.Crossover.GeneralPoint.InterleaveCrossover-class.html#_generate_locs
Bio.GA.Crossover.GeneralPoint.TwoCrossover	Bio.GA.Crossover.GeneralPoint.TwoCrossover-class.html
Bio.GA.Crossover.GeneralPoint.TwoCrossover._crossover	Bio.GA.Crossover.GeneralPoint.TwoCrossover-class.html#_crossover
Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover.do_crossover	Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover-class.html#do_crossover
Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover.__init__	Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover-class.html#__init__
Bio.GA.Crossover.GeneralPoint.TwoCrossover._generate_locs	Bio.GA.Crossover.GeneralPoint.TwoCrossover-class.html#_generate_locs
Bio.GA.Crossover.Point.SinglePointCrossover	Bio.GA.Crossover.Point.SinglePointCrossover-class.html
Bio.GA.Crossover.GeneralPoint.TwoCrossover._crossover	Bio.GA.Crossover.GeneralPoint.TwoCrossover-class.html#_crossover
Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover.do_crossover	Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover-class.html#do_crossover
Bio.GA.Crossover.GeneralPoint.TwoCrossover._generate_locs	Bio.GA.Crossover.GeneralPoint.TwoCrossover-class.html#_generate_locs
Bio.GA.Crossover.Point.SinglePointCrossover.__init__	Bio.GA.Crossover.Point.SinglePointCrossover-class.html#__init__
Bio.GA.Crossover.TwoPoint.TwoPointCrossover	Bio.GA.Crossover.TwoPoint.TwoPointCrossover-class.html
Bio.GA.Crossover.GeneralPoint.TwoCrossover._crossover	Bio.GA.Crossover.GeneralPoint.TwoCrossover-class.html#_crossover
Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover.do_crossover	Bio.GA.Crossover.GeneralPoint.GeneralPointCrossover-class.html#do_crossover
Bio.GA.Crossover.GeneralPoint.TwoCrossover._generate_locs	Bio.GA.Crossover.GeneralPoint.TwoCrossover-class.html#_generate_locs
Bio.GA.Crossover.TwoPoint.TwoPointCrossover.__init__	Bio.GA.Crossover.TwoPoint.TwoPointCrossover-class.html#__init__
Bio.GA.Crossover.Uniform.UniformCrossover	Bio.GA.Crossover.Uniform.UniformCrossover-class.html
Bio.GA.Crossover.Uniform.UniformCrossover.do_crossover	Bio.GA.Crossover.Uniform.UniformCrossover-class.html#do_crossover
Bio.GA.Crossover.Uniform.UniformCrossover.__init__	Bio.GA.Crossover.Uniform.UniformCrossover-class.html#__init__
Bio.GA.Evolver.GenerationEvolver	Bio.GA.Evolver.GenerationEvolver-class.html
Bio.GA.Evolver.GenerationEvolver.evolve	Bio.GA.Evolver.GenerationEvolver-class.html#evolve
Bio.GA.Evolver.GenerationEvolver.__init__	Bio.GA.Evolver.GenerationEvolver-class.html#__init__
Bio.GA.Evolver.SteadyStateEvolver	Bio.GA.Evolver.SteadyStateEvolver-class.html
Bio.GA.Evolver.SteadyStateEvolver.__init__	Bio.GA.Evolver.SteadyStateEvolver-class.html#__init__
Bio.GA.Mutation.General.SafeFitnessMutation	Bio.GA.Mutation.General.SafeFitnessMutation-class.html
Bio.GA.Mutation.General.SafeFitnessMutation.mutate	Bio.GA.Mutation.General.SafeFitnessMutation-class.html#mutate
Bio.GA.Mutation.General.SafeFitnessMutation.__init__	Bio.GA.Mutation.General.SafeFitnessMutation-class.html#__init__
Bio.GA.Mutation.Simple.ConversionMutation	Bio.GA.Mutation.Simple.ConversionMutation-class.html
Bio.GA.Mutation.Simple.ConversionMutation.mutate	Bio.GA.Mutation.Simple.ConversionMutation-class.html#mutate
Bio.GA.Mutation.Simple.ConversionMutation.__init__	Bio.GA.Mutation.Simple.ConversionMutation-class.html#__init__
Bio.GA.Mutation.Simple.SinglePositionMutation	Bio.GA.Mutation.Simple.SinglePositionMutation-class.html
Bio.GA.Mutation.Simple.SinglePositionMutation.mutate	Bio.GA.Mutation.Simple.SinglePositionMutation-class.html#mutate
Bio.GA.Mutation.Simple.SinglePositionMutation.__init__	Bio.GA.Mutation.Simple.SinglePositionMutation-class.html#__init__
Bio.GA.Organism.Organism	Bio.GA.Organism.Organism-class.html
Bio.GA.Organism.Organism.__str__	Bio.GA.Organism.Organism-class.html#__str__
Bio.GA.Organism.Organism.__cmp__	Bio.GA.Organism.Organism-class.html#__cmp__
Bio.GA.Organism.Organism.copy	Bio.GA.Organism.Organism-class.html#copy
Bio.GA.Organism.Organism.__init__	Bio.GA.Organism.Organism-class.html#__init__
Bio.GA.Organism.Organism.recalculate_fitness	Bio.GA.Organism.Organism-class.html#recalculate_fitness
Bio.GA.Repair.Stabilizing.AmbiguousRepair	Bio.GA.Repair.Stabilizing.AmbiguousRepair-class.html
Bio.GA.Repair.Stabilizing.AmbiguousRepair.repair	Bio.GA.Repair.Stabilizing.AmbiguousRepair-class.html#repair
Bio.GA.Repair.Stabilizing.AmbiguousRepair.__init__	Bio.GA.Repair.Stabilizing.AmbiguousRepair-class.html#__init__
Bio.GA.Selection.Abstract.AbstractSelection	Bio.GA.Selection.Abstract.AbstractSelection-class.html
Bio.GA.Selection.Abstract.AbstractSelection.__init__	Bio.GA.Selection.Abstract.AbstractSelection-class.html#__init__
Bio.GA.Selection.Abstract.AbstractSelection.select	Bio.GA.Selection.Abstract.AbstractSelection-class.html#select
Bio.GA.Selection.Abstract.AbstractSelection.mutate_and_crossover	Bio.GA.Selection.Abstract.AbstractSelection-class.html#mutate_and_crossover
Bio.GA.Selection.Diversity.DiversitySelection	Bio.GA.Selection.Diversity.DiversitySelection-class.html
Bio.GA.Selection.Diversity.DiversitySelection._get_new_organism	Bio.GA.Selection.Diversity.DiversitySelection-class.html#_get_new_organism
Bio.GA.Selection.Diversity.DiversitySelection.select	Bio.GA.Selection.Diversity.DiversitySelection-class.html#select
Bio.GA.Selection.Diversity.DiversitySelection.__init__	Bio.GA.Selection.Diversity.DiversitySelection-class.html#__init__
Bio.GA.Selection.Abstract.AbstractSelection.mutate_and_crossover	Bio.GA.Selection.Abstract.AbstractSelection-class.html#mutate_and_crossover
Bio.GA.Selection.RouletteWheel.RouletteWheelSelection	Bio.GA.Selection.RouletteWheel.RouletteWheelSelection-class.html
Bio.GA.Selection.RouletteWheel.RouletteWheelSelection.select	Bio.GA.Selection.RouletteWheel.RouletteWheelSelection-class.html#select
Bio.GA.Selection.RouletteWheel.RouletteWheelSelection.__init__	Bio.GA.Selection.RouletteWheel.RouletteWheelSelection-class.html#__init__
Bio.GA.Selection.RouletteWheel.RouletteWheelSelection._set_up_wheel	Bio.GA.Selection.RouletteWheel.RouletteWheelSelection-class.html#_set_up_wheel
Bio.GA.Selection.Abstract.AbstractSelection.mutate_and_crossover	Bio.GA.Selection.Abstract.AbstractSelection-class.html#mutate_and_crossover
Bio.GA.Selection.Tournament.TournamentSelection	Bio.GA.Selection.Tournament.TournamentSelection-class.html
Bio.GA.Selection.Tournament.TournamentSelection._fitness_cmp	Bio.GA.Selection.Tournament.TournamentSelection-class.html#_fitness_cmp
Bio.GA.Selection.Tournament.TournamentSelection.select	Bio.GA.Selection.Tournament.TournamentSelection-class.html#select
Bio.GA.Selection.Tournament.TournamentSelection.__init__	Bio.GA.Selection.Tournament.TournamentSelection-class.html#__init__
Bio.GA.Selection.Abstract.AbstractSelection.mutate_and_crossover	Bio.GA.Selection.Abstract.AbstractSelection-class.html#mutate_and_crossover
Bio.GFF.Connection	Bio.GFF.Connection-class.html
Bio.GFF.Segment.features	Bio.GFF.Segment-class.html#features
Bio.GFF.Segment.single_feature	Bio.GFF.Segment-class.html#single_feature
Bio.GFF.Connection.segment	Bio.GFF.Connection-class.html#segment
Bio.GFF.Connection.__init__	Bio.GFF.Connection-class.html#__init__
Bio.GFF.Feature	Bio.GFF.Feature-class.html
Bio.GFF.Feature.seq	Bio.GFF.Feature-class.html#seq
Bio.GFF.Feature.xrange	Bio.GFF.Feature-class.html#xrange
Bio.GFF.Feature.__str__	Bio.GFF.Feature-class.html#__str__
Bio.GFF.Feature.record	Bio.GFF.Feature-class.html#record
Bio.GFF.Feature.target_location	Bio.GFF.Feature-class.html#target_location
Bio.GFF.Feature.location	Bio.GFF.Feature-class.html#location
Bio.GFF.Feature.__hash__	Bio.GFF.Feature-class.html#__hash__
Bio.GFF.Feature.translate	Bio.GFF.Feature-class.html#translate
Bio.GFF.Feature.id	Bio.GFF.Feature-class.html#id
Bio.GFF.Feature.__init__	Bio.GFF.Feature-class.html#__init__
Bio.GFF.FeatureAggregate	Bio.GFF.FeatureAggregate-class.html
Bio.GFF.FeatureAggregate.seq	Bio.GFF.FeatureAggregate-class.html#seq
Bio.GFF.Feature.xrange	Bio.GFF.Feature-class.html#xrange
Bio.GFF.Feature.__str__	Bio.GFF.Feature-class.html#__str__
Bio.GFF.Feature.id	Bio.GFF.Feature-class.html#id
Bio.GFF.Feature.target_location	Bio.GFF.Feature-class.html#target_location
Bio.GFF.FeatureAggregate.location	Bio.GFF.FeatureAggregate-class.html#location
Bio.GFF.FeatureAggregate.translate	Bio.GFF.FeatureAggregate-class.html#translate
Bio.GFF.FeatureAggregate.map	Bio.GFF.FeatureAggregate-class.html#map
Bio.GFF.Feature.record	Bio.GFF.Feature-class.html#record
Bio.GFF.FeatureAggregate.__init__	Bio.GFF.FeatureAggregate-class.html#__init__
Bio.GFF.FeatureQuery	Bio.GFF.FeatureQuery-class.html
Bio.DocSQL.Query.suffix	Bio.DocSQL.Query-class.html#suffix
Bio.DocSQL.Query.dump	Bio.DocSQL.Query-class.html#dump
Bio.DocSQL.Query.prefix	Bio.DocSQL.Query-class.html#prefix
Bio.DocSQL.Query.message	Bio.DocSQL.Query-class.html#message
Bio.GFF.FeatureQuery.__init__	Bio.GFF.FeatureQuery-class.html#__init__
Bio.GFF.FeatureQuery.row_class	Bio.GFF.FeatureQueryRow-class.html
Bio.DocSQL.Query.MSG_FAILURE	Bio.DocSQL.Query-class.html#MSG_FAILURE
Bio.DocSQL.Query.__iter__	Bio.DocSQL.Query-class.html#__iter__
Bio.GFF.FeatureQuery.aggregate	Bio.GFF.FeatureQuery-class.html#aggregate
Bio.DocSQL.Query.error_message	Bio.DocSQL.Query-class.html#error_message
Bio.DocSQL.Query.cursor	Bio.DocSQL.Query-class.html#cursor
Bio.DocSQL.Query.MSG_SUCCESS	Bio.DocSQL.Query-class.html#MSG_SUCCESS
Bio.DocSQL.Query.__repr__	Bio.DocSQL.Query-class.html#__repr__
Bio.GFF.FeatureQueryRow	Bio.GFF.FeatureQueryRow-class.html
Bio.GFF.Feature.location	Bio.GFF.Feature-class.html#location
Bio.GFF.Feature.xrange	Bio.GFF.Feature-class.html#xrange
Bio.GFF.Feature.__str__	Bio.GFF.Feature-class.html#__str__
Bio.DocSQL.QueryRow.__setattr__	Bio.DocSQL.QueryRow-class.html#__setattr__
Bio.DocSQL.QueryRow.__getattr__	Bio.DocSQL.QueryRow-class.html#__getattr__
Bio.GFF.Feature.id	Bio.GFF.Feature-class.html#id
Bio.GFF.Feature.target_location	Bio.GFF.Feature-class.html#target_location
Bio.GFF.FeatureQueryRow.__init__	Bio.GFF.FeatureQueryRow-class.html#__init__
Bio.GFF.Feature.translate	Bio.GFF.Feature-class.html#translate
Bio.GFF.Feature.seq	Bio.GFF.Feature-class.html#seq
Bio.GFF.Feature.record	Bio.GFF.Feature-class.html#record
Bio.GFF.GenericTools.AppendableListDictionary	Bio.GFF.GenericTools.AppendableListDictionary-class.html
Bio.GFF.GenericTools.AppendableListDictionary.append_to	Bio.GFF.GenericTools.AppendableListDictionary-class.html#append_to
Bio.GFF.GenericTools.ArgsParser	Bio.GFF.GenericTools.ArgsParser-class.html
Bio.GFF.GenericTools.ArgsParser.__init__	Bio.GFF.GenericTools.ArgsParser-class.html#__init__
Bio.GFF.GenericTools.ForgivingDictionary	Bio.GFF.GenericTools.ForgivingDictionary-class.html
Bio.GFF.GenericTools.ForgivingDictionary.__getitem__	Bio.GFF.GenericTools.ForgivingDictionary-class.html#__getitem__
Bio.GFF.GenericTools.AppendableListDictionary.append_to	Bio.GFF.GenericTools.AppendableListDictionary-class.html#append_to
Bio.GFF.GenericTools.Surrogate	Bio.GFF.GenericTools.Surrogate-class.html
Bio.GFF.GenericTools.Surrogate.__getattr__	Bio.GFF.GenericTools.Surrogate-class.html#__getattr__
Bio.GFF.GenericTools.Surrogate.__init__	Bio.GFF.GenericTools.Surrogate-class.html#__init__
Bio.GFF.GenericTools.SurrogateNotInitedError	Bio.GFF.GenericTools.SurrogateNotInitedError-class.html
Bio.GFF.GenericTools.TempFile	Bio.GFF.GenericTools.TempFile-class.html
Bio.GFF.GenericTools.TempFile.__init__	Bio.GFF.GenericTools.TempFile-class.html#__init__
Bio.GFF.GenericTools.TempFile.__del__	Bio.GFF.GenericTools.TempFile-class.html#__del__
Bio.GFF.GenericTools.TempFile.remove	Bio.GFF.GenericTools.TempFile-class.html#remove
Bio.GFF.GenericTools.VerboseDict	Bio.GFF.GenericTools.VerboseDict-class.html
Bio.GFF.GenericTools.VerboseDict.__str__	Bio.GFF.GenericTools.VerboseDict-class.html#__str__
Bio.GFF.GenericTools.VerboseList	Bio.GFF.GenericTools.VerboseList-class.html
Bio.GFF.GenericTools.VerboseList.__str__	Bio.GFF.GenericTools.VerboseList-class.html#__str__
Bio.GFF.RetrieveSeqname	Bio.GFF.RetrieveSeqname-class.html
Bio.SeqRecord.SeqRecord._set_seq	Bio.SeqRecord.SeqRecord-class.html#_set_seq
Bio.SeqRecord.SeqRecord.seq	Bio.SeqRecord.SeqRecord-class.html#seq
Bio.SeqRecord.SeqRecord.__str__	Bio.SeqRecord.SeqRecord-class.html#__str__
Bio.GFF.RetrieveSeqname.__init__	Bio.GFF.RetrieveSeqname-class.html#__init__
Bio.SeqRecord.SeqRecord.__contains__	Bio.SeqRecord.SeqRecord-class.html#__contains__
Bio.SeqRecord.SeqRecord.__format__	Bio.SeqRecord.SeqRecord-class.html#__format__
Bio.GFF.GenericTools.Surrogate.__getattr__	Bio.GFF.GenericTools.Surrogate-class.html#__getattr__
Bio.SeqRecord.SeqRecord.__len__	Bio.SeqRecord.SeqRecord-class.html#__len__
Bio.SeqRecord.SeqRecord.__getitem__	Bio.SeqRecord.SeqRecord-class.html#__getitem__
Bio.SeqRecord.SeqRecord.format	Bio.SeqRecord.SeqRecord-class.html#format
Bio.SeqRecord.SeqRecord._set_per_letter_annotations	Bio.SeqRecord.SeqRecord-class.html#_set_per_letter_annotations
Bio.SeqRecord.SeqRecord.__iter__	Bio.SeqRecord.SeqRecord-class.html#__iter__
Bio.GFF.RetrieveSeqname.__records	Bio.GFF.RetrieveSeqname-class.html#__records
Bio.SeqRecord.SeqRecord.letter_annotations	Bio.SeqRecord.SeqRecord-class.html#letter_annotations
Bio.SeqRecord.SeqRecord.__nonzero__	Bio.SeqRecord.SeqRecord-class.html#__nonzero__
Bio.GFF.RetrieveSeqname._diagnostics	Bio.GFF.RetrieveSeqname-class.html#_diagnostics
Bio.SeqRecord.SeqRecord.__repr__	Bio.SeqRecord.SeqRecord-class.html#__repr__
Bio.GFF.Segment	Bio.GFF.Segment-class.html
Bio.GFF.Segment.single_feature	Bio.GFF.Segment-class.html#single_feature
Bio.GFF.Segment.__init__	Bio.GFF.Segment-class.html#__init__
Bio.GFF.Segment.features	Bio.GFF.Segment-class.html#features
Bio.GFF.binning.Meta	Bio.GFF.binning.Meta-class.html
Bio.GFF.binning.Meta.MIN_BIN	Bio.GFF.binning.Meta-class.html#MIN_BIN
Bio.GFF.binning.Meta.MAX_BIN	Bio.GFF.binning.Meta-class.html#MAX_BIN
Bio.GFF.easy.FeatureDict	Bio.GFF.easy.FeatureDict-class.html
Bio.GFF.easy.FeatureDict.__init__	Bio.GFF.easy.FeatureDict-class.html#__init__
Bio.GFF.easy.FeatureDict.__getitem__	Bio.GFF.easy.FeatureDict-class.html#__getitem__
Bio.GFF.easy.Location	Bio.GFF.easy.Location-class.html
Bio.GFF.easy.Location.sublocation	Bio.GFF.easy.Location-class.html#sublocation
Bio.GFF.easy.Location.__str__	Bio.GFF.easy.Location-class.html#__str__
Bio.GFF.easy.Location.direction_and_index	Bio.GFF.easy.Location-class.html#direction_and_index
Bio.GFF.easy.Location.reorient	Bio.GFF.easy.Location-class.html#reorient
Bio.GFF.easy.Location.findside	Bio.GFF.easy.Location-class.html#findside
Bio.GFF.easy.Location.bounding	Bio.GFF.easy.Location-class.html#bounding
Bio.GFF.easy.Location.__init__	Bio.GFF.easy.Location-class.html#__init__
Bio.GFF.easy.Location.end	Bio.GFF.easy.Location-class.html#end
Bio.GFF.easy.Location.five_prime	Bio.GFF.easy.Location-class.html#five_prime
Bio.GFF.easy.Location.start	Bio.GFF.easy.Location-class.html#start
Bio.GFF.easy.Location.add	Bio.GFF.easy.Location-class.html#add
Bio.GFF.easy.Location.three_prime	Bio.GFF.easy.Location-class.html#three_prime
Bio.GFF.easy.Location.__add__	Bio.GFF.easy.Location-class.html#__add__
Bio.GFF.easy.Location.findseqname_3prime	Bio.GFF.easy.Location-class.html#findseqname_3prime
Bio.GFF.easy.Location.intersection	Bio.GFF.easy.Location-class.html#intersection
Bio.GFF.easy.Location.reverse	Bio.GFF.easy.Location-class.html#reverse
Bio.GFF.easy.Location.findseqname	Bio.GFF.easy.Location-class.html#findseqname
Bio.GFF.easy.Location.direction2index	Bio.GFF.easy.Location-class.html#direction2index
Bio.GFF.easy.Location.length	Bio.GFF.easy.Location-class.html#length
Bio.GFF.easy.Location.__repr__	Bio.GFF.easy.Location-class.html#__repr__
Bio.GFF.easy.Location.__sub__	Bio.GFF.easy.Location-class.html#__sub__
Bio.GFF.easy.Location._joinstr	Bio.GFF.easy.Location-class.html#_joinstr
Bio.GFF.easy.Location.three_prime_range	Bio.GFF.easy.Location-class.html#three_prime_range
Bio.GFF.easy.LocationFromCoords	Bio.GFF.easy.LocationFromCoords-class.html
Bio.GFF.easy.Location.sublocation	Bio.GFF.easy.Location-class.html#sublocation
Bio.GFF.easy.Location.__str__	Bio.GFF.easy.Location-class.html#__str__
Bio.GFF.easy.Location.direction_and_index	Bio.GFF.easy.Location-class.html#direction_and_index
Bio.GFF.easy.Location.reorient	Bio.GFF.easy.Location-class.html#reorient
Bio.GFF.easy.Location.bounding	Bio.GFF.easy.Location-class.html#bounding
Bio.GFF.easy.LocationFromCoords.__init__	Bio.GFF.easy.LocationFromCoords-class.html#__init__
Bio.GFF.easy.Location.end	Bio.GFF.easy.Location-class.html#end
Bio.GFF.easy.Location.length	Bio.GFF.easy.Location-class.html#length
Bio.GFF.easy.Location.start	Bio.GFF.easy.Location-class.html#start
Bio.GFF.easy.Location.add	Bio.GFF.easy.Location-class.html#add
Bio.GFF.easy.Location.three_prime	Bio.GFF.easy.Location-class.html#three_prime
Bio.GFF.easy.Location.findside	Bio.GFF.easy.Location-class.html#findside
Bio.GFF.easy.Location.__add__	Bio.GFF.easy.Location-class.html#__add__
Bio.GFF.easy.Location.findseqname_3prime	Bio.GFF.easy.Location-class.html#findseqname_3prime
Bio.GFF.easy.Location.intersection	Bio.GFF.easy.Location-class.html#intersection
Bio.GFF.easy.Location.reverse	Bio.GFF.easy.Location-class.html#reverse
Bio.GFF.easy.Location.findseqname	Bio.GFF.easy.Location-class.html#findseqname
Bio.GFF.easy.Location.direction2index	Bio.GFF.easy.Location-class.html#direction2index
Bio.GFF.easy.Location.five_prime	Bio.GFF.easy.Location-class.html#five_prime
Bio.GFF.easy.Location.__repr__	Bio.GFF.easy.Location-class.html#__repr__
Bio.GFF.easy.Location.__sub__	Bio.GFF.easy.Location-class.html#__sub__
Bio.GFF.easy.Location._joinstr	Bio.GFF.easy.Location-class.html#_joinstr
Bio.GFF.easy.Location.three_prime_range	Bio.GFF.easy.Location-class.html#three_prime_range
Bio.GFF.easy.LocationFromString	Bio.GFF.easy.LocationFromString-class.html
Bio.GFF.easy.Location.sublocation	Bio.GFF.easy.Location-class.html#sublocation
Bio.GFF.easy.Location.__str__	Bio.GFF.easy.Location-class.html#__str__
Bio.GFF.easy.Location.direction_and_index	Bio.GFF.easy.Location-class.html#direction_and_index
Bio.GFF.easy.Location.reorient	Bio.GFF.easy.Location-class.html#reorient
Bio.GFF.easy.Location.bounding	Bio.GFF.easy.Location-class.html#bounding
Bio.GFF.easy.LocationFromString.__init__	Bio.GFF.easy.LocationFromString-class.html#__init__
Bio.GFF.easy.Location.end	Bio.GFF.easy.Location-class.html#end
Bio.GFF.easy.Location.length	Bio.GFF.easy.Location-class.html#length
Bio.GFF.easy.Location.start	Bio.GFF.easy.Location-class.html#start
Bio.GFF.easy.Location.add	Bio.GFF.easy.Location-class.html#add
Bio.GFF.easy.Location.three_prime	Bio.GFF.easy.Location-class.html#three_prime
Bio.GFF.easy.Location.findside	Bio.GFF.easy.Location-class.html#findside
Bio.GFF.easy.Location.__add__	Bio.GFF.easy.Location-class.html#__add__
Bio.GFF.easy.Location.findseqname_3prime	Bio.GFF.easy.Location-class.html#findseqname_3prime
Bio.GFF.easy.Location.intersection	Bio.GFF.easy.Location-class.html#intersection
Bio.GFF.easy.Location.reverse	Bio.GFF.easy.Location-class.html#reverse
Bio.GFF.easy.Location.findseqname	Bio.GFF.easy.Location-class.html#findseqname
Bio.GFF.easy.Location.direction2index	Bio.GFF.easy.Location-class.html#direction2index
Bio.GFF.easy.Location.five_prime	Bio.GFF.easy.Location-class.html#five_prime
Bio.GFF.easy.Location.__repr__	Bio.GFF.easy.Location-class.html#__repr__
Bio.GFF.easy.Location.__sub__	Bio.GFF.easy.Location-class.html#__sub__
Bio.GFF.easy.Location._joinstr	Bio.GFF.easy.Location-class.html#_joinstr
Bio.GFF.easy.Location.three_prime_range	Bio.GFF.easy.Location-class.html#three_prime_range
Bio.GFF.easy.LocationJoin	Bio.GFF.easy.LocationJoin-class.html
Bio.GFF.easy.Location.sublocation	Bio.GFF.easy.Location-class.html#sublocation
Bio.GFF.easy.Location.__str__	Bio.GFF.easy.Location-class.html#__str__
Bio.GFF.easy.Location.direction_and_index	Bio.GFF.easy.Location-class.html#direction_and_index
Bio.GFF.easy.Location.reorient	Bio.GFF.easy.Location-class.html#reorient
Bio.GFF.easy.Location.bounding	Bio.GFF.easy.Location-class.html#bounding
Bio.GFF.easy.LocationJoin.__init__	Bio.GFF.easy.LocationJoin-class.html#__init__
Bio.GFF.easy.Location.end	Bio.GFF.easy.Location-class.html#end
Bio.GFF.easy.Location.length	Bio.GFF.easy.Location-class.html#length
Bio.GFF.easy.Location.start	Bio.GFF.easy.Location-class.html#start
Bio.GFF.easy.Location.add	Bio.GFF.easy.Location-class.html#add
Bio.GFF.easy.Location.three_prime	Bio.GFF.easy.Location-class.html#three_prime
Bio.GFF.easy.Location.findside	Bio.GFF.easy.Location-class.html#findside
Bio.GFF.easy.Location.__add__	Bio.GFF.easy.Location-class.html#__add__
Bio.GFF.easy.Location.findseqname_3prime	Bio.GFF.easy.Location-class.html#findseqname_3prime
Bio.GFF.easy.Location.intersection	Bio.GFF.easy.Location-class.html#intersection
Bio.GFF.easy.Location.reverse	Bio.GFF.easy.Location-class.html#reverse
Bio.GFF.easy.Location.findseqname	Bio.GFF.easy.Location-class.html#findseqname
Bio.GFF.easy.Location.direction2index	Bio.GFF.easy.Location-class.html#direction2index
Bio.GFF.easy.Location.five_prime	Bio.GFF.easy.Location-class.html#five_prime
Bio.GFF.easy.Location.__repr__	Bio.GFF.easy.Location-class.html#__repr__
Bio.GFF.easy.Location.__sub__	Bio.GFF.easy.Location-class.html#__sub__
Bio.GFF.easy.Location._joinstr	Bio.GFF.easy.Location-class.html#_joinstr
Bio.GFF.easy.Location.three_prime_range	Bio.GFF.easy.Location-class.html#three_prime_range
Bio.GenBank.FeatureParser	Bio.GenBank.FeatureParser-class.html
Bio.GenBank.FeatureParser.parse	Bio.GenBank.FeatureParser-class.html#parse
Bio.GenBank.FeatureParser.__init__	Bio.GenBank.FeatureParser-class.html#__init__
Bio.GenBank.Iterator	Bio.GenBank.Iterator-class.html
Bio.GenBank.Iterator.__iter__	Bio.GenBank.Iterator-class.html#__iter__
Bio.GenBank.Iterator.__init__	Bio.GenBank.Iterator-class.html#__init__
Bio.GenBank.Iterator.next	Bio.GenBank.Iterator-class.html#next
Bio.GenBank.LocationParser.AbsoluteLocation	Bio.GenBank.LocationParser.AbsoluteLocation-class.html
Bio.GenBank.LocationParser.AbsoluteLocation.__repr__	Bio.GenBank.LocationParser.AbsoluteLocation-class.html#__repr__
Bio.GenBank.LocationParser.AbsoluteLocation.__init__	Bio.GenBank.LocationParser.AbsoluteLocation-class.html#__init__
Bio.GenBank.LocationParser.Between	Bio.GenBank.LocationParser.Between-class.html
Bio.GenBank.LocationParser.Between.__repr__	Bio.GenBank.LocationParser.Between-class.html#__repr__
Bio.GenBank.LocationParser.Between.__init__	Bio.GenBank.LocationParser.Between-class.html#__init__
Bio.GenBank.LocationParser.FeatureName	Bio.GenBank.LocationParser.FeatureName-class.html
Bio.GenBank.LocationParser.FeatureName.__repr__	Bio.GenBank.LocationParser.FeatureName-class.html#__repr__
Bio.GenBank.LocationParser.FeatureName.__init__	Bio.GenBank.LocationParser.FeatureName-class.html#__init__
Bio.GenBank.LocationParser.Function	Bio.GenBank.LocationParser.Function-class.html
Bio.GenBank.LocationParser.Function.__repr__	Bio.GenBank.LocationParser.Function-class.html#__repr__
Bio.GenBank.LocationParser.Function.__init__	Bio.GenBank.LocationParser.Function-class.html#__init__
Bio.GenBank.LocationParser.HighBound	Bio.GenBank.LocationParser.HighBound-class.html
Bio.GenBank.LocationParser.HighBound.__repr__	Bio.GenBank.LocationParser.HighBound-class.html#__repr__
Bio.GenBank.LocationParser.HighBound.__init__	Bio.GenBank.LocationParser.HighBound-class.html#__init__
Bio.GenBank.LocationParser.Integer	Bio.GenBank.LocationParser.Integer-class.html
Bio.GenBank.LocationParser.Integer.__str__	Bio.GenBank.LocationParser.Integer-class.html#__str__
Bio.GenBank.LocationParser.Integer.type	Bio.GenBank.LocationParser.Integer-class.html#type
Bio.GenBank.LocationParser.Integer.__repr__	Bio.GenBank.LocationParser.Integer-class.html#__repr__
Bio.GenBank.LocationParser.Integer.__init__	Bio.GenBank.LocationParser.Integer-class.html#__init__
Bio.GenBank.LocationParser.Integer.__cmp__	Bio.GenBank.LocationParser.Integer-class.html#__cmp__
Bio.GenBank.LocationParser.LocationParser	Bio.GenBank.LocationParser.LocationParser-class.html
Bio.GenBank.LocationParser.LocationParser.p_base_range	Bio.GenBank.LocationParser.LocationParser-class.html#p_base_range
Bio.GenBank.LocationParser.LocationParser.p_low_base_bound	Bio.GenBank.LocationParser.LocationParser-class.html#p_low_base_bound
Bio.GenBank.LocationParser.LocationParser.p_database	Bio.GenBank.LocationParser.LocationParser-class.html#p_database
Bio.Parsers.spark.GenericParser._START	Bio.Parsers.spark.GenericParser-class.html#_START
Bio.GenBank.LocationParser.LocationParser.p_high_base_bound	Bio.GenBank.LocationParser.LocationParser-class.html#p_high_base_bound
Bio.Parsers.spark.GenericParser.parse	Bio.Parsers.spark.GenericParser-class.html#parse
Bio.Parsers.spark.GenericParser.typestring	Bio.Parsers.spark.GenericParser-class.html#typestring
Bio.Parsers.spark.GenericParser._EOF	Bio.Parsers.spark.GenericParser-class.html#_EOF
Bio.GenBank.LocationParser.LocationParser.p_absolute_location	Bio.GenBank.LocationParser.LocationParser-class.html#p_absolute_location
Bio.GenBank.LocationParser.LocationParser.__init__	Bio.GenBank.LocationParser.LocationParser-class.html#__init__
Bio.Parsers.spark.GenericParser.buildTree	Bio.Parsers.spark.GenericParser-class.html#buildTree
Bio.GenBank.LocationParser.LocationParser.p_path	Bio.GenBank.LocationParser.LocationParser-class.html#p_path
Bio.GenBank.LocationParser.LocationParser.p_primary_accession	Bio.GenBank.LocationParser.LocationParser-class.html#p_primary_accession
Bio.Parsers.spark.GenericParser.addRule	Bio.Parsers.spark.GenericParser-class.html#addRule
Bio.GenBank.LocationParser.LocationParser.p_feature_label	Bio.GenBank.LocationParser.LocationParser-class.html#p_feature_label
Bio.Parsers.spark.GenericParser.ambiguity	Bio.Parsers.spark.GenericParser-class.html#ambiguity
Bio.Parsers.spark.GenericParser.collectRules	Bio.Parsers.spark.GenericParser-class.html#collectRules
Bio.Parsers.spark.GenericParser.preprocess	Bio.Parsers.spark.GenericParser-class.html#preprocess
Bio.GenBank.LocationParser.LocationParser.p_function	Bio.GenBank.LocationParser.LocationParser-class.html#p_function
Bio.GenBank.LocationParser.LocationParser.p_functional_operator	Bio.GenBank.LocationParser.LocationParser-class.html#p_functional_operator
Bio.Parsers.spark.GenericParser.buildState	Bio.Parsers.spark.GenericParser-class.html#buildState
Bio.GenBank.LocationParser.LocationParser.p_location	Bio.GenBank.LocationParser.LocationParser-class.html#p_location
Bio.Parsers.spark.GenericParser.makeFIRST	Bio.Parsers.spark.GenericParser-class.html#makeFIRST
Bio.Parsers.spark.GenericParser.buildTree_r	Bio.Parsers.spark.GenericParser-class.html#buildTree_r
Bio.Parsers.spark.GenericParser.resolve	Bio.Parsers.spark.GenericParser-class.html#resolve
Bio.Parsers.spark.GenericParser.augment	Bio.Parsers.spark.GenericParser-class.html#augment
Bio.GenBank.LocationParser.LocationParser.p_feature_name	Bio.GenBank.LocationParser.LocationParser-class.html#p_feature_name
Bio.GenBank.LocationParser.LocationParser.p_local_location	Bio.GenBank.LocationParser.LocationParser-class.html#p_local_location
Bio.GenBank.LocationParser.LocationParser.p_two_base_bound_2	Bio.GenBank.LocationParser.LocationParser-class.html#p_two_base_bound_2
Bio.GenBank.LocationParser.LocationParser.p_two_base_bound_1	Bio.GenBank.LocationParser.LocationParser-class.html#p_two_base_bound_1
Bio.GenBank.LocationParser.LocationParser.p_location_list	Bio.GenBank.LocationParser.LocationParser-class.html#p_location_list
Bio.Parsers.spark.GenericParser.error	Bio.Parsers.spark.GenericParser-class.html#error
Bio.GenBank.LocationParser.LocationParser.p_base_position	Bio.GenBank.LocationParser.LocationParser-class.html#p_base_position
Bio.GenBank.LocationParser.LocationParser.p_between_position	Bio.GenBank.LocationParser.LocationParser-class.html#p_between_position
Bio.GenBank.LocationParser.LocationScanner	Bio.GenBank.LocationParser.LocationScanner-class.html
Bio.Parsers.spark.GenericScanner.reflect	Bio.Parsers.spark.GenericScanner-class.html#reflect
Bio.GenBank.LocationParser.LocationScanner.t_comma	Bio.GenBank.LocationParser.LocationScanner-class.html#t_comma
Bio.GenBank.LocationParser.LocationScanner.t_unsigned_integer	Bio.GenBank.LocationParser.LocationScanner-class.html#t_unsigned_integer
Bio.GenBank.LocationParser.LocationScanner.t_double_dot	Bio.GenBank.LocationParser.LocationScanner-class.html#t_double_dot
Bio.GenBank.LocationParser.LocationScanner.t_dot	Bio.GenBank.LocationParser.LocationScanner-class.html#t_dot
Bio.GenBank.LocationParser.LocationScanner.t_caret	Bio.GenBank.LocationParser.LocationScanner-class.html#t_caret
Bio.GenBank.LocationParser.LocationScanner.t_close_paren	Bio.GenBank.LocationParser.LocationScanner-class.html#t_close_paren
Bio.GenBank.LocationParser.LocationScanner.t_double_colon	Bio.GenBank.LocationParser.LocationScanner-class.html#t_double_colon
Bio.Parsers.spark.GenericScanner.error	Bio.Parsers.spark.GenericScanner-class.html#error
Bio.GenBank.LocationParser.LocationScanner.t_less_than	Bio.GenBank.LocationParser.LocationScanner-class.html#t_less_than
Bio.Parsers.spark.GenericScanner.t_default	Bio.Parsers.spark.GenericScanner-class.html#t_default
Bio.GenBank.LocationParser.LocationScanner.__init__	Bio.GenBank.LocationParser.LocationScanner-class.html#__init__
Bio.GenBank.LocationParser.LocationScanner.t_open_paren	Bio.GenBank.LocationParser.LocationScanner-class.html#t_open_paren
Bio.GenBank.LocationParser.LocationScanner.tokenize	Bio.GenBank.LocationParser.LocationScanner-class.html#tokenize
Bio.GenBank.LocationParser.LocationScanner.t_greater_than	Bio.GenBank.LocationParser.LocationScanner-class.html#t_greater_than
Bio.GenBank.LocationParser.LocationScanner.t_integer	Bio.GenBank.LocationParser.LocationScanner-class.html#t_integer
Bio.Parsers.spark.GenericScanner.makeRE	Bio.Parsers.spark.GenericScanner-class.html#makeRE
Bio.GenBank.LocationParser.LocationScanner.t_symbol	Bio.GenBank.LocationParser.LocationScanner-class.html#t_symbol
Bio.GenBank.LocationParser.LocationScanner.t_colon	Bio.GenBank.LocationParser.LocationScanner-class.html#t_colon
Bio.GenBank.LocationParser.LowBound	Bio.GenBank.LocationParser.LowBound-class.html
Bio.GenBank.LocationParser.LowBound.__repr__	Bio.GenBank.LocationParser.LowBound-class.html#__repr__
Bio.GenBank.LocationParser.LowBound.__init__	Bio.GenBank.LocationParser.LowBound-class.html#__init__
Bio.GenBank.LocationParser.Path	Bio.GenBank.LocationParser.Path-class.html
Bio.GenBank.LocationParser.Path.__repr__	Bio.GenBank.LocationParser.Path-class.html#__repr__
Bio.GenBank.LocationParser.Path.__init__	Bio.GenBank.LocationParser.Path-class.html#__init__
Bio.GenBank.LocationParser.Range	Bio.GenBank.LocationParser.Range-class.html
Bio.GenBank.LocationParser.Range.__repr__	Bio.GenBank.LocationParser.Range-class.html#__repr__
Bio.GenBank.LocationParser.Range.__init__	Bio.GenBank.LocationParser.Range-class.html#__init__
Bio.GenBank.LocationParser.Symbol	Bio.GenBank.LocationParser.Symbol-class.html
Bio.GenBank.LocationParser.Symbol.__str__	Bio.GenBank.LocationParser.Symbol-class.html#__str__
Bio.GenBank.LocationParser.Symbol.type	Bio.GenBank.LocationParser.Symbol-class.html#type
Bio.GenBank.LocationParser.Symbol.__repr__	Bio.GenBank.LocationParser.Symbol-class.html#__repr__
Bio.GenBank.LocationParser.Symbol.__init__	Bio.GenBank.LocationParser.Symbol-class.html#__init__
Bio.GenBank.LocationParser.Symbol.__cmp__	Bio.GenBank.LocationParser.Symbol-class.html#__cmp__
Bio.GenBank.LocationParser.Token	Bio.GenBank.LocationParser.Token-class.html
Bio.GenBank.LocationParser.Token.__repr__	Bio.GenBank.LocationParser.Token-class.html#__repr__
Bio.GenBank.LocationParser.Token.__init__	Bio.GenBank.LocationParser.Token-class.html#__init__
Bio.GenBank.LocationParser.Token.__cmp__	Bio.GenBank.LocationParser.Token-class.html#__cmp__
Bio.GenBank.LocationParser.TwoBound	Bio.GenBank.LocationParser.TwoBound-class.html
Bio.GenBank.LocationParser.TwoBound.__repr__	Bio.GenBank.LocationParser.TwoBound-class.html#__repr__
Bio.GenBank.LocationParser.TwoBound.__init__	Bio.GenBank.LocationParser.TwoBound-class.html#__init__
Bio.GenBank.LocationParser.UnsignedInteger	Bio.GenBank.LocationParser.UnsignedInteger-class.html
Bio.GenBank.LocationParser.Integer.__str__	Bio.GenBank.LocationParser.Integer-class.html#__str__
Bio.GenBank.LocationParser.UnsignedInteger.type	Bio.GenBank.LocationParser.UnsignedInteger-class.html#type
Bio.GenBank.LocationParser.UnsignedInteger.__repr__	Bio.GenBank.LocationParser.UnsignedInteger-class.html#__repr__
Bio.GenBank.LocationParser.Integer.__init__	Bio.GenBank.LocationParser.Integer-class.html#__init__
Bio.GenBank.LocationParser.Integer.__cmp__	Bio.GenBank.LocationParser.Integer-class.html#__cmp__
Bio.GenBank.LocationParserError	Bio.GenBank.LocationParserError-class.html
Bio.GenBank.NCBIDictionary	Bio.GenBank.NCBIDictionary-class.html
Bio.GenBank.NCBIDictionary.VALID_FORMATS	Bio.GenBank.NCBIDictionary-class.html#VALID_FORMATS
Bio.GenBank.NCBIDictionary.__getitem__	Bio.GenBank.NCBIDictionary-class.html#__getitem__
Bio.GenBank.NCBIDictionary.get	Bio.GenBank.NCBIDictionary-class.html#get
Bio.GenBank.NCBIDictionary.keys	Bio.GenBank.NCBIDictionary-class.html#keys
Bio.GenBank.NCBIDictionary.items	Bio.GenBank.NCBIDictionary-class.html#items
Bio.GenBank.NCBIDictionary.clear	Bio.GenBank.NCBIDictionary-class.html#clear
Bio.GenBank.NCBIDictionary.update	Bio.GenBank.NCBIDictionary-class.html#update
Bio.GenBank.NCBIDictionary.__setitem__	Bio.GenBank.NCBIDictionary-class.html#__setitem__
Bio.GenBank.NCBIDictionary.has_key	Bio.GenBank.NCBIDictionary-class.html#has_key
Bio.GenBank.NCBIDictionary.values	Bio.GenBank.NCBIDictionary-class.html#values
Bio.GenBank.NCBIDictionary.__len__	Bio.GenBank.NCBIDictionary-class.html#__len__
Bio.GenBank.NCBIDictionary.__init__	Bio.GenBank.NCBIDictionary-class.html#__init__
Bio.GenBank.NCBIDictionary.copy	Bio.GenBank.NCBIDictionary-class.html#copy
Bio.GenBank.NCBIDictionary.VALID_DATABASES	Bio.GenBank.NCBIDictionary-class.html#VALID_DATABASES
Bio.GenBank.ParserFailureError	Bio.GenBank.ParserFailureError-class.html
Bio.GenBank.Record.Feature	Bio.GenBank.Record.Feature-class.html
Bio.GenBank.Record.Feature.__str__	Bio.GenBank.Record.Feature-class.html#__str__
Bio.GenBank.Record.Feature.__init__	Bio.GenBank.Record.Feature-class.html#__init__
Bio.GenBank.Record.Qualifier	Bio.GenBank.Record.Qualifier-class.html
Bio.GenBank.Record.Qualifier.__init__	Bio.GenBank.Record.Qualifier-class.html#__init__
Bio.GenBank.Record.Record	Bio.GenBank.Record.Record-class.html
Bio.GenBank.Record.Record.GB_FEATURE_INDENT	Bio.GenBank.Record.Record-class.html#GB_FEATURE_INDENT
Bio.GenBank.Record.Record._wgs_line	Bio.GenBank.Record.Record-class.html#_wgs_line
Bio.GenBank.Record.Record.GB_OTHER_INTERNAL_INDENT	Bio.GenBank.Record.Record-class.html#GB_OTHER_INTERNAL_INDENT
Bio.GenBank.Record.Record.GB_BASE_INDENT	Bio.GenBank.Record.Record-class.html#GB_BASE_INDENT
Bio.GenBank.Record.Record._source_line	Bio.GenBank.Record.Record-class.html#_source_line
Bio.GenBank.Record.Record.__str__	Bio.GenBank.Record.Record-class.html#__str__
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Bio.GenBank._RecordConsumer.nid	Bio.GenBank._RecordConsumer-class.html#nid
Bio.GenBank._RecordConsumer.primary	Bio.GenBank._RecordConsumer-class.html#primary
Bio.ParserSupport.AbstractConsumer._unhandled_section	Bio.ParserSupport.AbstractConsumer-class.html#_unhandled_section
Bio.GenBank._RecordConsumer.authors	Bio.GenBank._RecordConsumer-class.html#authors
Bio.GenBank._RecordConsumer.date	Bio.GenBank._RecordConsumer-class.html#date
Bio.GenBank._BaseGenBankConsumer._split_accessions	Bio.GenBank._BaseGenBankConsumer-class.html#_split_accessions
Bio.GenBank._RecordConsumer.segment	Bio.GenBank._RecordConsumer-class.html#segment
Bio.GenBank._RecordConsumer.contig_location	Bio.GenBank._RecordConsumer-class.html#contig_location
Bio.GenBank._RecordConsumer.remark	Bio.GenBank._RecordConsumer-class.html#remark
Bio.GenBank._BaseGenBankConsumer._normalize_spaces	Bio.GenBank._BaseGenBankConsumer-class.html#_normalize_spaces
Bio.GenBank._RecordConsumer.residue_type	Bio.GenBank._RecordConsumer-class.html#residue_type
Bio.GenBank._BaseGenBankConsumer.remove_space_keys	Bio.GenBank._BaseGenBankConsumer-class.html#remove_space_keys
Bio.GenBank._RecordConsumer.consrtm	Bio.GenBank._RecordConsumer-class.html#consrtm
Bio.GenBank._RecordConsumer.origin_name	Bio.GenBank._RecordConsumer-class.html#origin_name
Bio.GenBank._RecordConsumer.project	Bio.GenBank._RecordConsumer-class.html#project
Bio.GenBank._RecordConsumer.add_wgs_scafld	Bio.GenBank._RecordConsumer-class.html#add_wgs_scafld
Bio.ParserSupport.AbstractConsumer._unhandled	Bio.ParserSupport.AbstractConsumer-class.html#_unhandled
Bio.GenBank._RecordConsumer._add_feature	Bio.GenBank._RecordConsumer-class.html#_add_feature
Bio.GenBank._RecordConsumer.feature_qualifier_description	Bio.GenBank._RecordConsumer-class.html#feature_qualifier_description
Bio.GenBank._BaseGenBankConsumer._clean_location	Bio.GenBank._BaseGenBankConsumer-class.html#_clean_location
Bio.GenBank._RecordConsumer.organism	Bio.GenBank._RecordConsumer-class.html#organism
Bio.GenBank.utils.FeatureValueCleaner	Bio.GenBank.utils.FeatureValueCleaner-class.html
Bio.GenBank.utils.FeatureValueCleaner.keys_to_process	Bio.GenBank.utils.FeatureValueCleaner-class.html#keys_to_process
Bio.GenBank.utils.FeatureValueCleaner.clean_value	Bio.GenBank.utils.FeatureValueCleaner-class.html#clean_value
Bio.GenBank.utils.FeatureValueCleaner._clean_translation	Bio.GenBank.utils.FeatureValueCleaner-class.html#_clean_translation
Bio.GenBank.utils.FeatureValueCleaner.__init__	Bio.GenBank.utils.FeatureValueCleaner-class.html#__init__
Bio.Geo.Record.Record	Bio.Geo.Record.Record-class.html
Bio.Geo.Record.Record.__str__	Bio.Geo.Record.Record-class.html#__str__
Bio.Geo.Record.Record.__init__	Bio.Geo.Record.Record-class.html#__init__
Bio.Graphics.BasicChromosome.Chromosome	Bio.Graphics.BasicChromosome.Chromosome-class.html
Bio.Graphics.BasicChromosome.Chromosome.subcomponent_size	Bio.Graphics.BasicChromosome.Chromosome-class.html#subcomponent_size
Bio.Graphics.BasicChromosome.Chromosome.draw	Bio.Graphics.BasicChromosome.Chromosome-class.html#draw
Bio.Graphics.BasicChromosome._ChromosomeComponent.remove	Bio.Graphics.BasicChromosome._ChromosomeComponent-class.html#remove
Bio.Graphics.BasicChromosome._ChromosomeComponent.add	Bio.Graphics.BasicChromosome._ChromosomeComponent-class.html#add
Bio.Graphics.BasicChromosome.Chromosome._draw_label	Bio.Graphics.BasicChromosome.Chromosome-class.html#_draw_label
Bio.Graphics.BasicChromosome.Chromosome.__init__	Bio.Graphics.BasicChromosome.Chromosome-class.html#__init__
Bio.Graphics.BasicChromosome.ChromosomeSegment	Bio.Graphics.BasicChromosome.ChromosomeSegment-class.html
Bio.Graphics.BasicChromosome.ChromosomeSegment.draw	Bio.Graphics.BasicChromosome.ChromosomeSegment-class.html#draw
Bio.Graphics.BasicChromosome._ChromosomeComponent.remove	Bio.Graphics.BasicChromosome._ChromosomeComponent-class.html#remove
Bio.Graphics.BasicChromosome._ChromosomeComponent.add	Bio.Graphics.BasicChromosome._ChromosomeComponent-class.html#add
Bio.Graphics.BasicChromosome.ChromosomeSegment._draw_label	Bio.Graphics.BasicChromosome.ChromosomeSegment-class.html#_draw_label
Bio.Graphics.BasicChromosome.ChromosomeSegment._draw_segment	Bio.Graphics.BasicChromosome.ChromosomeSegment-class.html#_draw_segment
Bio.Graphics.BasicChromosome.ChromosomeSegment._draw_subcomponents	Bio.Graphics.BasicChromosome.ChromosomeSegment-class.html#_draw_subcomponents
Bio.Graphics.BasicChromosome.ChromosomeSegment.__init__	Bio.Graphics.BasicChromosome.ChromosomeSegment-class.html#__init__
Bio.Graphics.BasicChromosome.Organism	Bio.Graphics.BasicChromosome.Organism-class.html
Bio.Graphics.BasicChromosome.Organism.draw	Bio.Graphics.BasicChromosome.Organism-class.html#draw
Bio.Graphics.BasicChromosome.Organism._draw_legend	Bio.Graphics.BasicChromosome.Organism-class.html#_draw_legend
Bio.Graphics.BasicChromosome._ChromosomeComponent.remove	Bio.Graphics.BasicChromosome._ChromosomeComponent-class.html#remove
Bio.Graphics.BasicChromosome._ChromosomeComponent.add	Bio.Graphics.BasicChromosome._ChromosomeComponent-class.html#add
Bio.Graphics.BasicChromosome.Organism._draw_title	Bio.Graphics.BasicChromosome.Organism-class.html#_draw_title
Bio.Graphics.BasicChromosome.Organism.__init__	Bio.Graphics.BasicChromosome.Organism-class.html#__init__
Bio.Graphics.BasicChromosome.TelomereSegment	Bio.Graphics.BasicChromosome.TelomereSegment-class.html
Bio.Graphics.BasicChromosome.ChromosomeSegment.draw	Bio.Graphics.BasicChromosome.ChromosomeSegment-class.html#draw
Bio.Graphics.BasicChromosome._ChromosomeComponent.remove	Bio.Graphics.BasicChromosome._ChromosomeComponent-class.html#remove
Bio.Graphics.BasicChromosome._ChromosomeComponent.add	Bio.Graphics.BasicChromosome._ChromosomeComponent-class.html#add
Bio.Graphics.BasicChromosome.ChromosomeSegment._draw_label	Bio.Graphics.BasicChromosome.ChromosomeSegment-class.html#_draw_label
Bio.Graphics.BasicChromosome.TelomereSegment._draw_segment	Bio.Graphics.BasicChromosome.TelomereSegment-class.html#_draw_segment
Bio.Graphics.BasicChromosome.ChromosomeSegment._draw_subcomponents	Bio.Graphics.BasicChromosome.ChromosomeSegment-class.html#_draw_subcomponents
Bio.Graphics.BasicChromosome.TelomereSegment.__init__	Bio.Graphics.BasicChromosome.TelomereSegment-class.html#__init__
Bio.Graphics.BasicChromosome._ChromosomeComponent	Bio.Graphics.BasicChromosome._ChromosomeComponent-class.html
Bio.Graphics.BasicChromosome._ChromosomeComponent.draw	Bio.Graphics.BasicChromosome._ChromosomeComponent-class.html#draw
Bio.Graphics.BasicChromosome._ChromosomeComponent.remove	Bio.Graphics.BasicChromosome._ChromosomeComponent-class.html#remove
Bio.Graphics.BasicChromosome._ChromosomeComponent.add	Bio.Graphics.BasicChromosome._ChromosomeComponent-class.html#add
Bio.Graphics.BasicChromosome._ChromosomeComponent.__init__	Bio.Graphics.BasicChromosome._ChromosomeComponent-class.html#__init__
Bio.Graphics.Comparative.ComparativeScatterPlot	Bio.Graphics.Comparative.ComparativeScatterPlot-class.html
Bio.Graphics.Comparative.ComparativeScatterPlot._draw_scatter_plot	Bio.Graphics.Comparative.ComparativeScatterPlot-class.html#_draw_scatter_plot
Bio.Graphics.Comparative.ComparativeScatterPlot._set_colors_and_shapes	Bio.Graphics.Comparative.ComparativeScatterPlot-class.html#_set_colors_and_shapes
Bio.Graphics.Comparative.ComparativeScatterPlot.draw_to_file	Bio.Graphics.Comparative.ComparativeScatterPlot-class.html#draw_to_file
Bio.Graphics.Comparative.ComparativeScatterPlot._draw_title	Bio.Graphics.Comparative.ComparativeScatterPlot-class.html#_draw_title
Bio.Graphics.Comparative.ComparativeScatterPlot._find_min_max	Bio.Graphics.Comparative.ComparativeScatterPlot-class.html#_find_min_max
Bio.Graphics.Comparative.ComparativeScatterPlot.__init__	Bio.Graphics.Comparative.ComparativeScatterPlot-class.html#__init__
Bio.Graphics.DisplayRepresentation.ChromosomeCounts	Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html
Bio.Graphics.DisplayRepresentation.ChromosomeCounts.add_count	Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html#add_count
Bio.Graphics.DisplayRepresentation.ChromosomeCounts.fill_chromosome	Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html#fill_chromosome
Bio.Graphics.DisplayRepresentation.ChromosomeCounts._color_from_count	Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html#_color_from_count
Bio.Graphics.DisplayRepresentation.ChromosomeCounts.set_scale	Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html#set_scale
Bio.Graphics.DisplayRepresentation.ChromosomeCounts.scale_segment_value	Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html#scale_segment_value
Bio.Graphics.DisplayRepresentation.ChromosomeCounts.get_segment_info	Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html#get_segment_info
Bio.Graphics.DisplayRepresentation.ChromosomeCounts.__init__	Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html#__init__
Bio.Graphics.DisplayRepresentation.ChromosomeCounts.add_label	Bio.Graphics.DisplayRepresentation.ChromosomeCounts-class.html#add_label
Bio.Graphics.Distribution.BarChartDistribution	Bio.Graphics.Distribution.BarChartDistribution-class.html
Bio.Graphics.Distribution.BarChartDistribution.draw	Bio.Graphics.Distribution.BarChartDistribution-class.html#draw
Bio.Graphics.Distribution.BarChartDistribution._determine_position	Bio.Graphics.Distribution.BarChartDistribution-class.html#_determine_position
Bio.Graphics.Distribution.BarChartDistribution._draw_title	Bio.Graphics.Distribution.BarChartDistribution-class.html#_draw_title
Bio.Graphics.Distribution.BarChartDistribution.__init__	Bio.Graphics.Distribution.BarChartDistribution-class.html#__init__
Bio.Graphics.Distribution.DistributionPage	Bio.Graphics.Distribution.DistributionPage-class.html
Bio.Graphics.Distribution.DistributionPage.__init__	Bio.Graphics.Distribution.DistributionPage-class.html#__init__
Bio.Graphics.Distribution.DistributionPage.draw	Bio.Graphics.Distribution.DistributionPage-class.html#draw
Bio.Graphics.Distribution.DistributionPage._draw_legend	Bio.Graphics.Distribution.DistributionPage-class.html#_draw_legend
Bio.Graphics.Distribution.DistributionPage._draw_title	Bio.Graphics.Distribution.DistributionPage-class.html#_draw_title
Bio.Graphics.Distribution.DistributionPage._draw_distributions	Bio.Graphics.Distribution.DistributionPage-class.html#_draw_distributions
Bio.Graphics.Distribution.LineDistribution	Bio.Graphics.Distribution.LineDistribution-class.html
Bio.Graphics.Distribution.LineDistribution.draw	Bio.Graphics.Distribution.LineDistribution-class.html#draw
Bio.Graphics.Distribution.LineDistribution.__init__	Bio.Graphics.Distribution.LineDistribution-class.html#__init__
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer._set_ycentre	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#_set_ycentre
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.set_bounds	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#set_bounds
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.set_page_size	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#set_page_size
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.xcentre	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#xcentre
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.ycentre	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#ycentre
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.__init__	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#__init__
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.is_in_bounds	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#is_in_bounds
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer._set_xcentre	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#_set_xcentre
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.set_margins	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#set_margins
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.__len__	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#__len__
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer.draw_track	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html#draw_track
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.set_bounds	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#set_bounds
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer.draw_graph_set	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html#draw_graph_set
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer._draw_arc_arrow	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html#_draw_arc_arrow
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer.__init__	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html#__init__
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer.draw_feature	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html#draw_feature
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer._set_ycentre	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#_set_ycentre
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.set_page_size	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#set_page_size
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer.canvas_angle	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html#canvas_angle
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer.draw_bar_graph	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html#draw_bar_graph
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer.draw_heat_graph	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html#draw_heat_graph
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.set_margins	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#set_margins
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.__len__	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#__len__
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer._draw_arc	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html#_draw_arc
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer.draw	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html#draw
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer.draw_feature_set	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html#draw_feature_set
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer.draw_line_graph	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html#draw_line_graph
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.ycentre	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#ycentre
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer.draw_tick	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html#draw_tick
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer.draw_greytrack	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html#draw_greytrack
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer.draw_scale	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html#draw_scale
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.xcentre	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#xcentre
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer.draw_test_tracks	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html#draw_test_tracks
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer.get_feature_sigil	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html#get_feature_sigil
Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer.set_track_heights	Bio.Graphics.GenomeDiagram._CircularDrawer.CircularDrawer-class.html#set_track_heights
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.is_in_bounds	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#is_in_bounds
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer._set_xcentre	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#_set_xcentre
Bio.Graphics.GenomeDiagram._Colors.ColorTranslator	Bio.Graphics.GenomeDiagram._Colors.ColorTranslator-class.html
Bio.Graphics.GenomeDiagram._Colors.ColorTranslator.read_colorscheme	Bio.Graphics.GenomeDiagram._Colors.ColorTranslator-class.html#read_colorscheme
Bio.Graphics.GenomeDiagram._Colors.ColorTranslator.float1_color	Bio.Graphics.GenomeDiagram._Colors.ColorTranslator-class.html#float1_color
Bio.Graphics.GenomeDiagram._Colors.ColorTranslator.int255_color	Bio.Graphics.GenomeDiagram._Colors.ColorTranslator-class.html#int255_color
Bio.Graphics.GenomeDiagram._Colors.ColorTranslator.get_colorscheme	Bio.Graphics.GenomeDiagram._Colors.ColorTranslator-class.html#get_colorscheme
Bio.Graphics.GenomeDiagram._Colors.ColorTranslator.artemis_color	Bio.Graphics.GenomeDiagram._Colors.ColorTranslator-class.html#artemis_color
Bio.Graphics.GenomeDiagram._Colors.ColorTranslator.get_artemis_colorscheme	Bio.Graphics.GenomeDiagram._Colors.ColorTranslator-class.html#get_artemis_colorscheme
Bio.Graphics.GenomeDiagram._Colors.ColorTranslator.scheme_color	Bio.Graphics.GenomeDiagram._Colors.ColorTranslator-class.html#scheme_color
Bio.Graphics.GenomeDiagram._Colors.ColorTranslator.translate	Bio.Graphics.GenomeDiagram._Colors.ColorTranslator-class.html#translate
Bio.Graphics.GenomeDiagram._Colors.ColorTranslator.__init__	Bio.Graphics.GenomeDiagram._Colors.ColorTranslator-class.html#__init__
Bio.Graphics.GenomeDiagram._Diagram.Diagram	Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html
Bio.Graphics.GenomeDiagram._Diagram.Diagram.get_drawn_levels	Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#get_drawn_levels
Bio.Graphics.GenomeDiagram._Diagram.Diagram.__str__	Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#__str__
Bio.Graphics.GenomeDiagram._Diagram.Diagram.__init__	Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#__init__
Bio.Graphics.GenomeDiagram._Diagram.Diagram.add_track	Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#add_track
Bio.Graphics.GenomeDiagram._Diagram.Diagram.write	Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#write
Bio.Graphics.GenomeDiagram._Diagram.Diagram.move_track	Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#move_track
Bio.Graphics.GenomeDiagram._Diagram.Diagram.draw	Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#draw
Bio.Graphics.GenomeDiagram._Diagram.Diagram.write_to_string	Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#write_to_string
Bio.Graphics.GenomeDiagram._Diagram.Diagram.__getitem__	Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#__getitem__
Bio.Graphics.GenomeDiagram._Diagram.Diagram.renumber_tracks	Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#renumber_tracks
Bio.Graphics.GenomeDiagram._Diagram.Diagram.get_levels	Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#get_levels
Bio.Graphics.GenomeDiagram._Diagram.Diagram.set_all_tracks	Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#set_all_tracks
Bio.Graphics.GenomeDiagram._Diagram.Diagram.new_track	Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#new_track
Bio.Graphics.GenomeDiagram._Diagram.Diagram.range	Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#range
Bio.Graphics.GenomeDiagram._Diagram.Diagram.del_track	Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#del_track
Bio.Graphics.GenomeDiagram._Diagram.Diagram.get_tracks	Bio.Graphics.GenomeDiagram._Diagram.Diagram-class.html#get_tracks
Bio.Graphics.GenomeDiagram._Feature.Feature	Bio.Graphics.GenomeDiagram._Feature.Feature-class.html
Bio.Graphics.GenomeDiagram._Feature.Feature.get_feature	Bio.Graphics.GenomeDiagram._Feature.Feature-class.html#get_feature
Bio.Graphics.GenomeDiagram._Feature.Feature.__getattr__	Bio.Graphics.GenomeDiagram._Feature.Feature-class.html#__getattr__
Bio.Graphics.GenomeDiagram._Feature.Feature.__process_feature	Bio.Graphics.GenomeDiagram._Feature.Feature-class.html#__process_feature
Bio.Graphics.GenomeDiagram._Feature.Feature.set_color	Bio.Graphics.GenomeDiagram._Feature.Feature-class.html#set_color
Bio.Graphics.GenomeDiagram._Feature.Feature.set_feature	Bio.Graphics.GenomeDiagram._Feature.Feature-class.html#set_feature
Bio.Graphics.GenomeDiagram._Feature.Feature.set_colour	Bio.Graphics.GenomeDiagram._Feature.Feature-class.html#set_colour
Bio.Graphics.GenomeDiagram._Feature.Feature.__init__	Bio.Graphics.GenomeDiagram._Feature.Feature-class.html#__init__
Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet	Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet-class.html
Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet.get_ids	Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet-class.html#get_ids
Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet.__str__	Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet-class.html#__str__
Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet.add_feature	Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet-class.html#add_feature
Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet.__init__	Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet-class.html#__init__
Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet.__len__	Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet-class.html#__len__
Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet.set_all_features	Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet-class.html#set_all_features
Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet.__getitem__	Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet-class.html#__getitem__
Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet.del_feature	Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet-class.html#del_feature
Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet.to_string	Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet-class.html#to_string
Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet.range	Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet-class.html#range
Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet.get_features	Bio.Graphics.GenomeDiagram._FeatureSet.FeatureSet-class.html#get_features
Bio.Graphics.GenomeDiagram._Graph.GraphData	Bio.Graphics.GenomeDiagram._Graph.GraphData-class.html
Bio.Graphics.GenomeDiagram._Graph.GraphData.set_data	Bio.Graphics.GenomeDiagram._Graph.GraphData-class.html#set_data
Bio.Graphics.GenomeDiagram._Graph.GraphData.get_data	Bio.Graphics.GenomeDiagram._Graph.GraphData-class.html#get_data
Bio.Graphics.GenomeDiagram._Graph.GraphData.__getslice__	Bio.Graphics.GenomeDiagram._Graph.GraphData-class.html#__getslice__
Bio.Graphics.GenomeDiagram._Graph.GraphData.__getitem__	Bio.Graphics.GenomeDiagram._Graph.GraphData-class.html#__getitem__
Bio.Graphics.GenomeDiagram._Graph.GraphData.centre	Bio.Graphics.GenomeDiagram._Graph.GraphData-class.html#centre
Bio.Graphics.GenomeDiagram._Graph.GraphData.__str__	Bio.Graphics.GenomeDiagram._Graph.GraphData-class.html#__str__
Bio.Graphics.GenomeDiagram._Graph.GraphData.stdev	Bio.Graphics.GenomeDiagram._Graph.GraphData-class.html#stdev
Bio.Graphics.GenomeDiagram._Graph.GraphData._set_centre	Bio.Graphics.GenomeDiagram._Graph.GraphData-class.html#_set_centre
Bio.Graphics.GenomeDiagram._Graph.GraphData.range	Bio.Graphics.GenomeDiagram._Graph.GraphData-class.html#range
Bio.Graphics.GenomeDiagram._Graph.GraphData.__init__	Bio.Graphics.GenomeDiagram._Graph.GraphData-class.html#__init__
Bio.Graphics.GenomeDiagram._Graph.GraphData.quartiles	Bio.Graphics.GenomeDiagram._Graph.GraphData-class.html#quartiles
Bio.Graphics.GenomeDiagram._Graph.GraphData.add_point	Bio.Graphics.GenomeDiagram._Graph.GraphData-class.html#add_point
Bio.Graphics.GenomeDiagram._Graph.GraphData.__len__	Bio.Graphics.GenomeDiagram._Graph.GraphData-class.html#__len__
Bio.Graphics.GenomeDiagram._Graph.GraphData.mean	Bio.Graphics.GenomeDiagram._Graph.GraphData-class.html#mean
Bio.Graphics.GenomeDiagram._GraphSet.GraphSet	Bio.Graphics.GenomeDiagram._GraphSet.GraphSet-class.html
Bio.Graphics.GenomeDiagram._GraphSet.GraphSet.__getitem__	Bio.Graphics.GenomeDiagram._GraphSet.GraphSet-class.html#__getitem__
Bio.Graphics.GenomeDiagram._GraphSet.GraphSet.get_ids	Bio.Graphics.GenomeDiagram._GraphSet.GraphSet-class.html#get_ids
Bio.Graphics.GenomeDiagram._GraphSet.GraphSet.__str__	Bio.Graphics.GenomeDiagram._GraphSet.GraphSet-class.html#__str__
Bio.Graphics.GenomeDiagram._GraphSet.GraphSet.get_graphs	Bio.Graphics.GenomeDiagram._GraphSet.GraphSet-class.html#get_graphs
Bio.Graphics.GenomeDiagram._GraphSet.GraphSet.to_string	Bio.Graphics.GenomeDiagram._GraphSet.GraphSet-class.html#to_string
Bio.Graphics.GenomeDiagram._GraphSet.GraphSet.new_graph	Bio.Graphics.GenomeDiagram._GraphSet.GraphSet-class.html#new_graph
Bio.Graphics.GenomeDiagram._GraphSet.GraphSet.__init__	Bio.Graphics.GenomeDiagram._GraphSet.GraphSet-class.html#__init__
Bio.Graphics.GenomeDiagram._GraphSet.GraphSet.range	Bio.Graphics.GenomeDiagram._GraphSet.GraphSet-class.html#range
Bio.Graphics.GenomeDiagram._GraphSet.GraphSet.del_graph	Bio.Graphics.GenomeDiagram._GraphSet.GraphSet-class.html#del_graph
Bio.Graphics.GenomeDiagram._GraphSet.GraphSet.data_quartiles	Bio.Graphics.GenomeDiagram._GraphSet.GraphSet-class.html#data_quartiles
Bio.Graphics.GenomeDiagram._GraphSet.GraphSet.__len__	Bio.Graphics.GenomeDiagram._GraphSet.GraphSet-class.html#__len__
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer.draw_track	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html#draw_track
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.set_bounds	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#set_bounds
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer.draw_graph_set	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html#draw_graph_set
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer.draw_feature_location	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html#draw_feature_location
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer.__init__	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html#__init__
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer.draw_feature	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html#draw_feature
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer.draw_test_tracks	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html#draw_test_tracks
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer.canvas_location	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html#canvas_location
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer.init_fragments	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html#init_fragments
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.set_page_size	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#set_page_size
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer.draw_bar_graph	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html#draw_bar_graph
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer.draw_heat_graph	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html#draw_heat_graph
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.set_margins	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#set_margins
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.__len__	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#__len__
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer.draw	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html#draw
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer.draw_feature_set	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html#draw_feature_set
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer.draw_line_graph	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html#draw_line_graph
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.ycentre	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#ycentre
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer.draw_tick	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html#draw_tick
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer.draw_greytrack	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html#draw_greytrack
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer.draw_scale	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html#draw_scale
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.xcentre	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#xcentre
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer._set_ycentre	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#_set_ycentre
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer.get_feature_sigil	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html#get_feature_sigil
Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer.set_track_heights	Bio.Graphics.GenomeDiagram._LinearDrawer.LinearDrawer-class.html#set_track_heights
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer.is_in_bounds	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#is_in_bounds
Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer._set_xcentre	Bio.Graphics.GenomeDiagram._AbstractDrawer.AbstractDrawer-class.html#_set_xcentre
Bio.Graphics.GenomeDiagram._Track.Track	Bio.Graphics.GenomeDiagram._Track.Track-class.html
Bio.Graphics.GenomeDiagram._Track.Track.del_set	Bio.Graphics.GenomeDiagram._Track.Track-class.html#del_set
Bio.Graphics.GenomeDiagram._Track.Track.__getitem__	Bio.Graphics.GenomeDiagram._Track.Track-class.html#__getitem__
Bio.Graphics.GenomeDiagram._Track.Track.get_ids	Bio.Graphics.GenomeDiagram._Track.Track-class.html#get_ids
Bio.Graphics.GenomeDiagram._Track.Track.__str__	Bio.Graphics.GenomeDiagram._Track.Track-class.html#__str__
Bio.Graphics.GenomeDiagram._Track.Track.to_string	Bio.Graphics.GenomeDiagram._Track.Track-class.html#to_string
Bio.Graphics.GenomeDiagram._Track.Track.range	Bio.Graphics.GenomeDiagram._Track.Track-class.html#range
Bio.Graphics.GenomeDiagram._Track.Track.add_set	Bio.Graphics.GenomeDiagram._Track.Track-class.html#add_set
Bio.Graphics.GenomeDiagram._Track.Track.get_sets	Bio.Graphics.GenomeDiagram._Track.Track-class.html#get_sets
Bio.Graphics.GenomeDiagram._Track.Track.new_set	Bio.Graphics.GenomeDiagram._Track.Track-class.html#new_set
Bio.Graphics.GenomeDiagram._Track.Track.__init__	Bio.Graphics.GenomeDiagram._Track.Track-class.html#__init__
Bio.HMM.DynamicProgramming.AbstractDPAlgorithms	Bio.HMM.DynamicProgramming.AbstractDPAlgorithms-class.html
Bio.HMM.DynamicProgramming.AbstractDPAlgorithms._foward_recursion	Bio.HMM.DynamicProgramming.AbstractDPAlgorithms-class.html#_foward_recursion
Bio.HMM.DynamicProgramming.AbstractDPAlgorithms.forward_algorithm	Bio.HMM.DynamicProgramming.AbstractDPAlgorithms-class.html#forward_algorithm
Bio.HMM.DynamicProgramming.AbstractDPAlgorithms._backward_recursion	Bio.HMM.DynamicProgramming.AbstractDPAlgorithms-class.html#_backward_recursion
Bio.HMM.DynamicProgramming.AbstractDPAlgorithms.__init__	Bio.HMM.DynamicProgramming.AbstractDPAlgorithms-class.html#__init__
Bio.HMM.DynamicProgramming.AbstractDPAlgorithms.backward_algorithm	Bio.HMM.DynamicProgramming.AbstractDPAlgorithms-class.html#backward_algorithm
Bio.HMM.DynamicProgramming.LogDPAlgorithms	Bio.HMM.DynamicProgramming.LogDPAlgorithms-class.html
Bio.HMM.DynamicProgramming.AbstractDPAlgorithms._foward_recursion	Bio.HMM.DynamicProgramming.AbstractDPAlgorithms-class.html#_foward_recursion
Bio.HMM.DynamicProgramming.AbstractDPAlgorithms.forward_algorithm	Bio.HMM.DynamicProgramming.AbstractDPAlgorithms-class.html#forward_algorithm
Bio.HMM.DynamicProgramming.AbstractDPAlgorithms._backward_recursion	Bio.HMM.DynamicProgramming.AbstractDPAlgorithms-class.html#_backward_recursion
Bio.HMM.DynamicProgramming.LogDPAlgorithms.__init__	Bio.HMM.DynamicProgramming.LogDPAlgorithms-class.html#__init__
Bio.HMM.DynamicProgramming.AbstractDPAlgorithms.backward_algorithm	Bio.HMM.DynamicProgramming.AbstractDPAlgorithms-class.html#backward_algorithm
Bio.HMM.DynamicProgramming.ScaledDPAlgorithms	Bio.HMM.DynamicProgramming.ScaledDPAlgorithms-class.html
Bio.HMM.DynamicProgramming.AbstractDPAlgorithms._foward_recursion	Bio.HMM.DynamicProgramming.AbstractDPAlgorithms-class.html#_foward_recursion
Bio.HMM.DynamicProgramming.ScaledDPAlgorithms._forward_recursion	Bio.HMM.DynamicProgramming.ScaledDPAlgorithms-class.html#_forward_recursion
Bio.HMM.DynamicProgramming.AbstractDPAlgorithms.backward_algorithm	Bio.HMM.DynamicProgramming.AbstractDPAlgorithms-class.html#backward_algorithm
Bio.HMM.DynamicProgramming.AbstractDPAlgorithms.forward_algorithm	Bio.HMM.DynamicProgramming.AbstractDPAlgorithms-class.html#forward_algorithm
Bio.HMM.DynamicProgramming.ScaledDPAlgorithms._backward_recursion	Bio.HMM.DynamicProgramming.ScaledDPAlgorithms-class.html#_backward_recursion
Bio.HMM.DynamicProgramming.ScaledDPAlgorithms._calculate_s_value	Bio.HMM.DynamicProgramming.ScaledDPAlgorithms-class.html#_calculate_s_value
Bio.HMM.DynamicProgramming.ScaledDPAlgorithms.__init__	Bio.HMM.DynamicProgramming.ScaledDPAlgorithms-class.html#__init__
Bio.HMM.MarkovModel.HiddenMarkovModel	Bio.HMM.MarkovModel.HiddenMarkovModel-class.html
Bio.HMM.MarkovModel.HiddenMarkovModel._calculate_from_transitions	Bio.HMM.MarkovModel.HiddenMarkovModel-class.html#_calculate_from_transitions
Bio.HMM.MarkovModel.HiddenMarkovModel.get_blank_transitions	Bio.HMM.MarkovModel.HiddenMarkovModel-class.html#get_blank_transitions
Bio.HMM.MarkovModel.HiddenMarkovModel.viterbi	Bio.HMM.MarkovModel.HiddenMarkovModel-class.html#viterbi
Bio.HMM.MarkovModel.HiddenMarkovModel.get_blank_emissions	Bio.HMM.MarkovModel.HiddenMarkovModel-class.html#get_blank_emissions
Bio.HMM.MarkovModel.HiddenMarkovModel._log_transform	Bio.HMM.MarkovModel.HiddenMarkovModel-class.html#_log_transform
Bio.HMM.MarkovModel.HiddenMarkovModel.__init__	Bio.HMM.MarkovModel.HiddenMarkovModel-class.html#__init__
Bio.HMM.MarkovModel.HiddenMarkovModel.transitions_from	Bio.HMM.MarkovModel.HiddenMarkovModel-class.html#transitions_from
Bio.HMM.MarkovModel.MarkovModelBuilder	Bio.HMM.MarkovModel.MarkovModelBuilder-class.html
Bio.HMM.MarkovModel.MarkovModelBuilder._all_pseudo	Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#_all_pseudo
Bio.HMM.MarkovModel.MarkovModelBuilder._all_blank	Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#_all_blank
Bio.HMM.MarkovModel.MarkovModelBuilder.allow_all_transitions	Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#allow_all_transitions
Bio.HMM.MarkovModel.MarkovModelBuilder.DEFAULT_PSEUDO	Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#DEFAULT_PSEUDO
Bio.HMM.MarkovModel.MarkovModelBuilder.set_transition_score	Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#set_transition_score
Bio.HMM.MarkovModel.MarkovModelBuilder.get_markov_model	Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#get_markov_model
Bio.HMM.MarkovModel.MarkovModelBuilder.destroy_transition	Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#destroy_transition
Bio.HMM.MarkovModel.MarkovModelBuilder.set_random_probabilities	Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#set_random_probabilities
Bio.HMM.MarkovModel.MarkovModelBuilder.set_transition_pseudocount	Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#set_transition_pseudocount
Bio.HMM.MarkovModel.MarkovModelBuilder.set_equal_probabilities	Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#set_equal_probabilities
Bio.HMM.MarkovModel.MarkovModelBuilder.allow_transition	Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#allow_transition
Bio.HMM.MarkovModel.MarkovModelBuilder.set_emission_pseudocount	Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#set_emission_pseudocount
Bio.HMM.MarkovModel.MarkovModelBuilder.__init__	Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#__init__
Bio.HMM.MarkovModel.MarkovModelBuilder.set_emission_score	Bio.HMM.MarkovModel.MarkovModelBuilder-class.html#set_emission_score
Bio.HMM.Trainer.AbstractTrainer	Bio.HMM.Trainer.AbstractTrainer-class.html
Bio.HMM.Trainer.AbstractTrainer.ml_estimator	Bio.HMM.Trainer.AbstractTrainer-class.html#ml_estimator
Bio.HMM.Trainer.AbstractTrainer.estimate_params	Bio.HMM.Trainer.AbstractTrainer-class.html#estimate_params
Bio.HMM.Trainer.AbstractTrainer.log_likelihood	Bio.HMM.Trainer.AbstractTrainer-class.html#log_likelihood
Bio.HMM.Trainer.AbstractTrainer.__init__	Bio.HMM.Trainer.AbstractTrainer-class.html#__init__
Bio.HMM.Trainer.BaumWelchTrainer	Bio.HMM.Trainer.BaumWelchTrainer-class.html
Bio.HMM.Trainer.AbstractTrainer.estimate_params	Bio.HMM.Trainer.AbstractTrainer-class.html#estimate_params
Bio.HMM.Trainer.AbstractTrainer.log_likelihood	Bio.HMM.Trainer.AbstractTrainer-class.html#log_likelihood
Bio.HMM.Trainer.AbstractTrainer.ml_estimator	Bio.HMM.Trainer.AbstractTrainer-class.html#ml_estimator
Bio.HMM.Trainer.BaumWelchTrainer.update_emissions	Bio.HMM.Trainer.BaumWelchTrainer-class.html#update_emissions
Bio.HMM.Trainer.BaumWelchTrainer.train	Bio.HMM.Trainer.BaumWelchTrainer-class.html#train
Bio.HMM.Trainer.BaumWelchTrainer.update_transitions	Bio.HMM.Trainer.BaumWelchTrainer-class.html#update_transitions
Bio.HMM.Trainer.BaumWelchTrainer.__init__	Bio.HMM.Trainer.BaumWelchTrainer-class.html#__init__
Bio.HMM.Trainer.KnownStateTrainer	Bio.HMM.Trainer.KnownStateTrainer-class.html
Bio.HMM.Trainer.KnownStateTrainer._count_emissions	Bio.HMM.Trainer.KnownStateTrainer-class.html#_count_emissions
Bio.HMM.Trainer.AbstractTrainer.estimate_params	Bio.HMM.Trainer.AbstractTrainer-class.html#estimate_params
Bio.HMM.Trainer.AbstractTrainer.log_likelihood	Bio.HMM.Trainer.AbstractTrainer-class.html#log_likelihood
Bio.HMM.Trainer.AbstractTrainer.ml_estimator	Bio.HMM.Trainer.AbstractTrainer-class.html#ml_estimator
Bio.HMM.Trainer.KnownStateTrainer.train	Bio.HMM.Trainer.KnownStateTrainer-class.html#train
Bio.HMM.Trainer.KnownStateTrainer.__init__	Bio.HMM.Trainer.KnownStateTrainer-class.html#__init__
Bio.HMM.Trainer.KnownStateTrainer._count_transitions	Bio.HMM.Trainer.KnownStateTrainer-class.html#_count_transitions
Bio.HMM.Trainer.TrainingSequence	Bio.HMM.Trainer.TrainingSequence-class.html
Bio.HMM.Trainer.TrainingSequence.__init__	Bio.HMM.Trainer.TrainingSequence-class.html#__init__
Bio.HotRand.HotCache	Bio.HotRand.HotCache-class.html
Bio.HotRand.HotCache.fill_hot_cache	Bio.HotRand.HotCache-class.html#fill_hot_cache
Bio.HotRand.HotCache.next_num	Bio.HotRand.HotCache-class.html#next_num
Bio.HotRand.HotCache.__init__	Bio.HotRand.HotCache-class.html#__init__
Bio.HotRand.HotRandom	Bio.HotRand.HotRandom-class.html
Bio.HotRand.HotRandom.hot_rand	Bio.HotRand.HotRandom-class.html#hot_rand
Bio.HotRand.HotRandom.__init__	Bio.HotRand.HotRandom-class.html#__init__
Bio.Index._InMemoryIndex	Bio.Index._InMemoryIndex-class.html
Bio.Index._InMemoryIndex.__version_key	Bio.Index._InMemoryIndex-class.html#__version_key
Bio.Index._InMemoryIndex.__init__	Bio.Index._InMemoryIndex-class.html#__init__
Bio.Index._InMemoryIndex._InMemoryIndex__version_key	Bio.Index._InMemoryIndex-class.html#_InMemoryIndex__version_key
Bio.Index._InMemoryIndex.__version	Bio.Index._InMemoryIndex-class.html#__version
Bio.Index._InMemoryIndex._InMemoryIndex__version	Bio.Index._InMemoryIndex-class.html#_InMemoryIndex__version
Bio.Index._InMemoryIndex.__del__	Bio.Index._InMemoryIndex-class.html#__del__
Bio.Index._InMemoryIndex.update	Bio.Index._InMemoryIndex-class.html#update
Bio.Index._InMemoryIndex.__setitem__	Bio.Index._InMemoryIndex-class.html#__setitem__
Bio.Index._InMemoryIndex.__delitem__	Bio.Index._InMemoryIndex-class.html#__delitem__
Bio.Index._InMemoryIndex.clear	Bio.Index._InMemoryIndex-class.html#clear
Bio.Index._InMemoryIndex._toobj	Bio.Index._InMemoryIndex-class.html#_toobj
Bio.Index._InMemoryIndex._tostr	Bio.Index._InMemoryIndex-class.html#_tostr
Bio.Index._ShelveIndex	Bio.Index._ShelveIndex-class.html
Bio.Index._ShelveIndex._ShelveIndex__version	Bio.Index._ShelveIndex-class.html#_ShelveIndex__version
Bio.Index._ShelveIndex.__version_key	Bio.Index._ShelveIndex-class.html#__version_key
Bio.Index._ShelveIndex.__init__	Bio.Index._ShelveIndex-class.html#__init__
Bio.Index._ShelveIndex._ShelveIndex__version_key	Bio.Index._ShelveIndex-class.html#_ShelveIndex__version_key
Bio.Index._ShelveIndex.__version	Bio.Index._ShelveIndex-class.html#__version
Bio.Index._ShelveIndex.__del__	Bio.Index._ShelveIndex-class.html#__del__
Bio.InterPro.InterProParser	Bio.InterPro.InterProParser-class.html
Bio.InterPro.InterProParser.feed	Bio.InterPro.InterProParser-class.html#feed
Bio.InterPro.InterProParser.start_table	Bio.InterPro.InterProParser-class.html#start_table
Bio.InterPro.InterProParser.start_li	Bio.InterPro.InterProParser-class.html#start_li
Bio.InterPro.InterProParser.start_ul	Bio.InterPro.InterProParser-class.html#start_ul
Bio.InterPro.InterProParser.start_h2	Bio.InterPro.InterProParser-class.html#start_h2
Bio.InterPro.InterProParser.end_li	Bio.InterPro.InterProParser-class.html#end_li
Bio.InterPro.InterProParser.handle_starttag	Bio.InterPro.InterProParser-class.html#handle_starttag
Bio.InterPro.InterProParser._flush_text	Bio.InterPro.InterProParser-class.html#_flush_text
Bio.InterPro.InterProParser.end_h2	Bio.InterPro.InterProParser-class.html#end_h2
Bio.InterPro.InterProParser.end_td	Bio.InterPro.InterProParser-class.html#end_td
Bio.InterPro.InterProParser.end_ul	Bio.InterPro.InterProParser-class.html#end_ul
Bio.InterPro.InterProParser.end_i	Bio.InterPro.InterProParser-class.html#end_i
Bio.InterPro.InterProParser.start_ol	Bio.InterPro.InterProParser-class.html#start_ol
Bio.InterPro.InterProParser.do_br	Bio.InterPro.InterProParser-class.html#do_br
Bio.InterPro.InterProParser.end_ol	Bio.InterPro.InterProParser-class.html#end_ol
Bio.InterPro.InterProParser.end_a	Bio.InterPro.InterProParser-class.html#end_a
Bio.InterPro.InterProParser.start_td	Bio.InterPro.InterProParser-class.html#start_td
Bio.InterPro.InterProParser.reset	Bio.InterPro.InterProParser-class.html#reset
Bio.InterPro.InterProParser.parse	Bio.InterPro.InterProParser-class.html#parse
Bio.InterPro.InterProParser.start_i	Bio.InterPro.InterProParser-class.html#start_i
Bio.InterPro.InterProParser.start_a	Bio.InterPro.InterProParser-class.html#start_a
Bio.InterPro.InterProParser.handle_data	Bio.InterPro.InterProParser-class.html#handle_data
Bio.InterPro.Record	Bio.InterPro.Record-class.html
Bio.InterPro.Record.__str__	Bio.InterPro.Record-class.html#__str__
Bio.KDTree.KDTree.KDTree	Bio.KDTree.KDTree.KDTree-class.html
Bio.KDTree.KDTree.KDTree.all_get_indices	Bio.KDTree.KDTree.KDTree-class.html#all_get_indices
Bio.KDTree.KDTree.KDTree.search	Bio.KDTree.KDTree.KDTree-class.html#search
Bio.KDTree.KDTree.KDTree.all_search	Bio.KDTree.KDTree.KDTree-class.html#all_search
Bio.KDTree.KDTree.KDTree.get_radii	Bio.KDTree.KDTree.KDTree-class.html#get_radii
Bio.KDTree.KDTree.KDTree.get_indices	Bio.KDTree.KDTree.KDTree-class.html#get_indices
Bio.KDTree.KDTree.KDTree.all_get_radii	Bio.KDTree.KDTree.KDTree-class.html#all_get_radii
Bio.KDTree.KDTree.KDTree.__init__	Bio.KDTree.KDTree.KDTree-class.html#__init__
Bio.KDTree.KDTree.KDTree.set_coords	Bio.KDTree.KDTree.KDTree-class.html#set_coords
Bio.KEGG.Compound.Record	Bio.KEGG.Compound.Record-class.html
Bio.KEGG.Compound.Record._dblinks	Bio.KEGG.Compound.Record-class.html#_dblinks
Bio.KEGG.Compound.Record._structures	Bio.KEGG.Compound.Record-class.html#_structures
Bio.KEGG.Compound.Record._enzyme	Bio.KEGG.Compound.Record-class.html#_enzyme
Bio.KEGG.Compound.Record.__str__	Bio.KEGG.Compound.Record-class.html#__str__
Bio.KEGG.Compound.Record._entry	Bio.KEGG.Compound.Record-class.html#_entry
Bio.KEGG.Compound.Record._pathway	Bio.KEGG.Compound.Record-class.html#_pathway
Bio.KEGG.Compound.Record._mass	Bio.KEGG.Compound.Record-class.html#_mass
Bio.KEGG.Compound.Record._name	Bio.KEGG.Compound.Record-class.html#_name
Bio.KEGG.Compound.Record.__init__	Bio.KEGG.Compound.Record-class.html#__init__
Bio.KEGG.Compound.Record._formula	Bio.KEGG.Compound.Record-class.html#_formula
Bio.KEGG.Enzyme.Record	Bio.KEGG.Enzyme.Record-class.html
Bio.KEGG.Enzyme.Record._effector	Bio.KEGG.Enzyme.Record-class.html#_effector
Bio.KEGG.Enzyme.Record._dblinks	Bio.KEGG.Enzyme.Record-class.html#_dblinks
Bio.KEGG.Enzyme.Record._structures	Bio.KEGG.Enzyme.Record-class.html#_structures
Bio.KEGG.Enzyme.Record._entry	Bio.KEGG.Enzyme.Record-class.html#_entry
Bio.KEGG.Enzyme.Record._inhibitor	Bio.KEGG.Enzyme.Record-class.html#_inhibitor
Bio.KEGG.Enzyme.Record.__str__	Bio.KEGG.Enzyme.Record-class.html#__str__
Bio.KEGG.Enzyme.Record._sysname	Bio.KEGG.Enzyme.Record-class.html#_sysname
Bio.KEGG.Enzyme.Record._genes	Bio.KEGG.Enzyme.Record-class.html#_genes
Bio.KEGG.Enzyme.Record._pathway	Bio.KEGG.Enzyme.Record-class.html#_pathway
Bio.KEGG.Enzyme.Record._substrate	Bio.KEGG.Enzyme.Record-class.html#_substrate
Bio.KEGG.Enzyme.Record._cofactor	Bio.KEGG.Enzyme.Record-class.html#_cofactor
Bio.KEGG.Enzyme.Record._product	Bio.KEGG.Enzyme.Record-class.html#_product
Bio.KEGG.Enzyme.Record._classname	Bio.KEGG.Enzyme.Record-class.html#_classname
Bio.KEGG.Enzyme.Record._disease	Bio.KEGG.Enzyme.Record-class.html#_disease
Bio.KEGG.Enzyme.Record._name	Bio.KEGG.Enzyme.Record-class.html#_name
Bio.KEGG.Enzyme.Record._comment	Bio.KEGG.Enzyme.Record-class.html#_comment
Bio.KEGG.Enzyme.Record.__init__	Bio.KEGG.Enzyme.Record-class.html#__init__
Bio.KEGG.Enzyme.Record._reaction	Bio.KEGG.Enzyme.Record-class.html#_reaction
Bio.LogisticRegression.LogisticRegression	Bio.LogisticRegression.LogisticRegression-class.html
Bio.LogisticRegression.LogisticRegression.__init__	Bio.LogisticRegression.LogisticRegression-class.html#__init__
Bio.MEME.Motif.Instance	Bio.MEME.Motif.Instance-class.html
Bio.MEME.Motif.Instance._motifname	Bio.MEME.Motif.Instance-class.html#_motifname
Bio.MEME.Motif.Instance._sequence	Bio.MEME.Motif.Instance-class.html#_sequence
Bio.MEME.Motif.Instance._strand	Bio.MEME.Motif.Instance-class.html#_strand
Bio.MEME.Motif.Instance._seqname	Bio.MEME.Motif.Instance-class.html#_seqname
Bio.MEME.Motif.Instance._pvalue	Bio.MEME.Motif.Instance-class.html#_pvalue
Bio.MEME.Motif.Instance._score	Bio.MEME.Motif.Instance-class.html#_score
Bio.MEME.Motif.Instance._length	Bio.MEME.Motif.Instance-class.html#_length
Bio.MEME.Motif.Instance._start	Bio.MEME.Motif.Instance-class.html#_start
Bio.MEME.Motif.Instance.__init__	Bio.MEME.Motif.Instance-class.html#__init__
Bio.MEME.Motif.MEMEMotif	Bio.MEME.Motif.MEMEMotif-class.html
Bio.MEME.Motif.MEMEMotif.add_to_logodds	Bio.MEME.Motif.MEMEMotif-class.html#add_to_logodds
Bio.MEME.Motif.MEMEMotif.add_to_pssm	Bio.MEME.Motif.MEMEMotif-class.html#add_to_pssm
Bio.MEME.Motif.Motif.add_instance	Bio.MEME.Motif.Motif-class.html#add_instance
Bio.MEME.Motif.Motif.make_consensus	Bio.MEME.Motif.Motif-class.html#make_consensus
Bio.MEME.Motif.MEMEMotif.compare_motifs	Bio.MEME.Motif.MEMEMotif-class.html#compare_motifs
Bio.MEME.Motif.Motif._alphabet	Bio.MEME.Motif.Motif-class.html#_alphabet
Bio.MEME.Motif.Motif.get_instance_by_name	Bio.MEME.Motif.Motif-class.html#get_instance_by_name
Bio.MEME.Motif.Motif._numoccurrences	Bio.MEME.Motif.Motif-class.html#_numoccurrences
Bio.MEME.Motif.Motif._consensus	Bio.MEME.Motif.Motif-class.html#_consensus
Bio.MEME.Motif.MEMEMotif.add_instance_from_values	Bio.MEME.Motif.MEMEMotif-class.html#add_instance_from_values
Bio.MEME.Motif.Motif._length	Bio.MEME.Motif.Motif-class.html#_length
Bio.MEME.Motif.MEMEMotif._evalue	Bio.MEME.Motif.MEMEMotif-class.html#_evalue
Bio.MEME.Motif.Motif._name	Bio.MEME.Motif.Motif-class.html#_name
Bio.MEME.Motif.MEMEMotif.__init__	Bio.MEME.Motif.MEMEMotif-class.html#__init__
Bio.MEME.Motif.Motif.make_pssm	Bio.MEME.Motif.Motif-class.html#make_pssm
Bio.MEME.Motif.Motif	Bio.MEME.Motif.Motif-class.html
Bio.MEME.Motif.Motif.add_instance	Bio.MEME.Motif.Motif-class.html#add_instance
Bio.MEME.Motif.Motif.make_consensus	Bio.MEME.Motif.Motif-class.html#make_consensus
Bio.MEME.Motif.Motif._numoccurrences	Bio.MEME.Motif.Motif-class.html#_numoccurrences
Bio.MEME.Motif.Motif._alphabet	Bio.MEME.Motif.Motif-class.html#_alphabet
Bio.MEME.Motif.Motif.get_instance_by_name	Bio.MEME.Motif.Motif-class.html#get_instance_by_name
Bio.MEME.Motif.Motif._consensus	Bio.MEME.Motif.Motif-class.html#_consensus
Bio.MEME.Motif.Motif._length	Bio.MEME.Motif.Motif-class.html#_length
Bio.MEME.Motif.Motif._name	Bio.MEME.Motif.Motif-class.html#_name
Bio.MEME.Motif.Motif.__init__	Bio.MEME.Motif.Motif-class.html#__init__
Bio.MEME.Motif.Motif.make_pssm	Bio.MEME.Motif.Motif-class.html#make_pssm
Bio.MEME.Parser.MASTParser	Bio.MEME.Parser.MASTParser-class.html
Bio.MEME.Parser.MASTParser.parse	Bio.MEME.Parser.MASTParser-class.html#parse
Bio.ParserSupport.AbstractParser.parse_file	Bio.ParserSupport.AbstractParser-class.html#parse_file
Bio.ParserSupport.AbstractParser.parse_str	Bio.ParserSupport.AbstractParser-class.html#parse_str
Bio.MEME.Parser.MASTParser.__init__	Bio.MEME.Parser.MASTParser-class.html#__init__
Bio.MEME.Parser.MASTRecord	Bio.MEME.Parser.MASTRecord-class.html
Bio.MEME.Parser.MASTRecord.get_motif_by_name	Bio.MEME.Parser.MASTRecord-class.html#get_motif_by_name
Bio.MEME.Parser.MASTRecord.get_motif_matches	Bio.MEME.Parser.MASTRecord-class.html#get_motif_matches
Bio.MEME.Parser.MASTRecord._add_match	Bio.MEME.Parser.MASTRecord-class.html#_add_match
Bio.MEME.Parser.MASTRecord.get_motif_matches_for_sequence	Bio.MEME.Parser.MASTRecord-class.html#get_motif_matches_for_sequence
Bio.MEME.Parser.MASTRecord._version	Bio.MEME.Parser.MASTRecord-class.html#_version
Bio.MEME.Parser.MASTRecord._alphabet	Bio.MEME.Parser.MASTRecord-class.html#_alphabet
Bio.MEME.Parser.MASTRecord._add_sequence	Bio.MEME.Parser.MASTRecord-class.html#_add_sequence
Bio.MEME.Parser.MASTRecord._add_motif	Bio.MEME.Parser.MASTRecord-class.html#_add_motif
Bio.MEME.Parser.MASTRecord._database	Bio.MEME.Parser.MASTRecord-class.html#_database
Bio.MEME.Parser.MASTRecord._add_diagram_for_sequence	Bio.MEME.Parser.MASTRecord-class.html#_add_diagram_for_sequence
Bio.MEME.Parser.MASTRecord.__init__	Bio.MEME.Parser.MASTRecord-class.html#__init__
Bio.MEME.Parser.MEMEParser	Bio.MEME.Parser.MEMEParser-class.html
Bio.MEME.Parser.MEMEParser.parse	Bio.MEME.Parser.MEMEParser-class.html#parse
Bio.ParserSupport.AbstractParser.parse_file	Bio.ParserSupport.AbstractParser-class.html#parse_file
Bio.ParserSupport.AbstractParser.parse_str	Bio.ParserSupport.AbstractParser-class.html#parse_str
Bio.MEME.Parser.MEMEParser.__init__	Bio.MEME.Parser.MEMEParser-class.html#__init__
Bio.MEME.Parser.MEMERecord	Bio.MEME.Parser.MEMERecord-class.html
Bio.MEME.Parser.MEMERecord.get_motif_by_name	Bio.MEME.Parser.MEMERecord-class.html#get_motif_by_name
Bio.MEME.Parser.MEMERecord.__init__	Bio.MEME.Parser.MEMERecord-class.html#__init__
Bio.MEME.Parser._MASTConsumer	Bio.MEME.Parser._MASTConsumer-class.html
Bio.MEME.Parser._MASTConsumer._parse_buffer	Bio.MEME.Parser._MASTConsumer-class.html#_parse_buffer
Bio.MEME.Parser._MASTConsumer._collapse_buffer	Bio.MEME.Parser._MASTConsumer-class.html#_collapse_buffer
Bio.MEME.Parser._MASTConsumer._version	Bio.MEME.Parser._MASTConsumer-class.html#_version
Bio.MEME.Parser._MASTConsumer._add_match_diagram	Bio.MEME.Parser._MASTConsumer-class.html#_add_match_diagram
Bio.MEME.Parser._MASTConsumer._add_diagram_from_buffer	Bio.MEME.Parser._MASTConsumer-class.html#_add_diagram_from_buffer
Bio.MEME.Parser._MASTConsumer._add_line_to_buffer	Bio.MEME.Parser._MASTConsumer-class.html#_add_line_to_buffer
Bio.MEME.Parser._MASTConsumer._add_motif_match	Bio.MEME.Parser._MASTConsumer-class.html#_add_motif_match
Bio.MEME.Parser._MASTConsumer._add_motif	Bio.MEME.Parser._MASTConsumer-class.html#_add_motif
Bio.MEME.Parser._MASTConsumer._database	Bio.MEME.Parser._MASTConsumer-class.html#_database
Bio.MEME.Parser._MASTConsumer.noevent	Bio.MEME.Parser._MASTConsumer-class.html#noevent
Bio.MEME.Parser._MASTConsumer._blank_buffer	Bio.MEME.Parser._MASTConsumer-class.html#_blank_buffer
Bio.MEME.Parser._MASTConsumer._set_current_seq	Bio.MEME.Parser._MASTConsumer-class.html#_set_current_seq
Bio.MEME.Parser._MASTConsumer.__init__	Bio.MEME.Parser._MASTConsumer-class.html#__init__
Bio.MEME.Parser._MASTConsumer._add_sequence_match_with_diagram	Bio.MEME.Parser._MASTConsumer-class.html#_add_sequence_match_with_diagram
Bio.MEME.Parser._MASTScanner	Bio.MEME.Parser._MASTScanner-class.html
Bio.MEME.Parser._MASTScanner.feed	Bio.MEME.Parser._MASTScanner-class.html#feed
Bio.MEME.Parser._MASTScanner._scan_annotated_matches	Bio.MEME.Parser._MASTScanner-class.html#_scan_annotated_matches
Bio.MEME.Parser._MASTScanner._scan_header	Bio.MEME.Parser._MASTScanner-class.html#_scan_header
Bio.MEME.Parser._MASTScanner._scan_matches	Bio.MEME.Parser._MASTScanner-class.html#_scan_matches
Bio.MEME.Parser._MEMEConsumer	Bio.MEME.Parser._MEMEConsumer-class.html
Bio.MEME.Parser._MEMEConsumer._datafile	Bio.MEME.Parser._MEMEConsumer-class.html#_datafile
Bio.MEME.Parser._MEMEConsumer._sequence_name	Bio.MEME.Parser._MEMEConsumer-class.html#_sequence_name
Bio.MEME.Parser._MEMEConsumer.add_to_pssm	Bio.MEME.Parser._MEMEConsumer-class.html#add_to_pssm
Bio.MEME.Parser._MEMEConsumer._commandline	Bio.MEME.Parser._MEMEConsumer-class.html#_commandline
Bio.MEME.Parser._MEMEConsumer.add_instance	Bio.MEME.Parser._MEMEConsumer-class.html#add_instance
Bio.MEME.Parser._MEMEConsumer._version	Bio.MEME.Parser._MEMEConsumer-class.html#_version
Bio.MEME.Parser._MEMEConsumer._alphabet	Bio.MEME.Parser._MEMEConsumer-class.html#_alphabet
Bio.MEME.Parser._MEMEConsumer.__init__	Bio.MEME.Parser._MEMEConsumer-class.html#__init__
Bio.MEME.Parser._MEMEConsumer.noevent	Bio.MEME.Parser._MEMEConsumer-class.html#noevent
Bio.MEME.Parser._MEMEConsumer.add_to_logodds	Bio.MEME.Parser._MEMEConsumer-class.html#add_to_logodds
Bio.MEME.Parser._MEMEConsumer.motif_name	Bio.MEME.Parser._MEMEConsumer-class.html#motif_name
Bio.MEME.Parser._MEMEConsumer._add_motif_with_info	Bio.MEME.Parser._MEMEConsumer-class.html#_add_motif_with_info
Bio.MEME.Parser._MEMEScanner	Bio.MEME.Parser._MEMEScanner-class.html
Bio.MEME.Parser._MEMEScanner.feed	Bio.MEME.Parser._MEMEScanner-class.html#feed
Bio.MEME.Parser._MEMEScanner._scan_header	Bio.MEME.Parser._MEMEScanner-class.html#_scan_header
Bio.MEME.Parser._MEMEScanner._scan_motifs	Bio.MEME.Parser._MEMEScanner-class.html#_scan_motifs
Bio.MarkovModel.MarkovModel	Bio.MarkovModel.MarkovModel-class.html
Bio.MarkovModel.MarkovModel.__str__	Bio.MarkovModel.MarkovModel-class.html#__str__
Bio.MarkovModel.MarkovModel.__init__	Bio.MarkovModel.MarkovModel-class.html#__init__
Bio.MaxEntropy.MaxEntropy	Bio.MaxEntropy.MaxEntropy-class.html
Bio.MaxEntropy.MaxEntropy.__init__	Bio.MaxEntropy.MaxEntropy-class.html#__init__
Bio.Medline.Record	Bio.Medline.Record-class.html
Bio.Medline.Record.__init__	Bio.Medline.Record-class.html#__init__
Bio.MissingExternalDependencyError	Bio.MissingExternalDependencyError-class.html
Bio.Motif.Applications._AlignAce.AlignAceCommandline	Bio.Motif.Applications._AlignAce.AlignAceCommandline-class.html
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Motif.Applications._AlignAce.AlignAceCommandline.__init__	Bio.Motif.Applications._AlignAce.AlignAceCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Motif.Applications._AlignAce.CompareAceCommandline	Bio.Motif.Applications._AlignAce.CompareAceCommandline-class.html
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Motif.Applications._AlignAce.CompareAceCommandline.__init__	Bio.Motif.Applications._AlignAce.CompareAceCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Motif.Parsers.AlignAce.AlignAceConsumer	Bio.Motif.Parsers.AlignAce.AlignAceConsumer-class.html
Bio.Motif.Parsers.AlignAce.AlignAceConsumer.motif	Bio.Motif.Parsers.AlignAce.AlignAceConsumer-class.html#motif
Bio.Motif.Parsers.AlignAce.AlignAceConsumer.motif_mask	Bio.Motif.Parsers.AlignAce.AlignAceConsumer-class.html#motif_mask
Bio.Motif.Parsers.AlignAce.AlignAceConsumer.parameters	Bio.Motif.Parsers.AlignAce.AlignAceConsumer-class.html#parameters
Bio.Motif.Parsers.AlignAce.AlignAceConsumer.sequence	Bio.Motif.Parsers.AlignAce.AlignAceConsumer-class.html#sequence
Bio.Motif.Parsers.AlignAce.AlignAceConsumer.motif_hit	Bio.Motif.Parsers.AlignAce.AlignAceConsumer-class.html#motif_hit
Bio.Motif.Parsers.AlignAce.AlignAceConsumer.command_line	Bio.Motif.Parsers.AlignAce.AlignAceConsumer-class.html#command_line
Bio.Motif.Parsers.AlignAce.AlignAceConsumer.motif_score	Bio.Motif.Parsers.AlignAce.AlignAceConsumer-class.html#motif_score
Bio.Motif.Parsers.AlignAce.AlignAceConsumer.version	Bio.Motif.Parsers.AlignAce.AlignAceConsumer-class.html#version
Bio.Motif.Parsers.AlignAce.AlignAceConsumer.sequences	Bio.Motif.Parsers.AlignAce.AlignAceConsumer-class.html#sequences
Bio.Motif.Parsers.AlignAce.AlignAceConsumer.noevent	Bio.Motif.Parsers.AlignAce.AlignAceConsumer-class.html#noevent
Bio.Motif.Parsers.AlignAce.AlignAceConsumer.parameter	Bio.Motif.Parsers.AlignAce.AlignAceConsumer-class.html#parameter
Bio.Motif.Parsers.AlignAce.AlignAceConsumer.__init__	Bio.Motif.Parsers.AlignAce.AlignAceConsumer-class.html#__init__
Bio.Motif.Parsers.AlignAce.AlignAceParser	Bio.Motif.Parsers.AlignAce.AlignAceParser-class.html
Bio.Motif.Parsers.AlignAce.AlignAceParser.parse	Bio.Motif.Parsers.AlignAce.AlignAceParser-class.html#parse
Bio.ParserSupport.AbstractParser.parse_file	Bio.ParserSupport.AbstractParser-class.html#parse_file
Bio.ParserSupport.AbstractParser.parse_str	Bio.ParserSupport.AbstractParser-class.html#parse_str
Bio.Motif.Parsers.AlignAce.AlignAceParser.__init__	Bio.Motif.Parsers.AlignAce.AlignAceParser-class.html#__init__
Bio.Motif.Parsers.AlignAce.AlignAceScanner	Bio.Motif.Parsers.AlignAce.AlignAceScanner-class.html
Bio.Motif.Parsers.AlignAce.AlignAceScanner.feed	Bio.Motif.Parsers.AlignAce.AlignAceScanner-class.html#feed
Bio.Motif.Parsers.AlignAce.CompareAceConsumer	Bio.Motif.Parsers.AlignAce.CompareAceConsumer-class.html
Bio.Motif.Parsers.AlignAce.CompareAceConsumer.motif_score	Bio.Motif.Parsers.AlignAce.CompareAceConsumer-class.html#motif_score
Bio.Motif.Parsers.AlignAce.CompareAceConsumer.__init__	Bio.Motif.Parsers.AlignAce.CompareAceConsumer-class.html#__init__
Bio.Motif.Parsers.AlignAce.CompareAceParser	Bio.Motif.Parsers.AlignAce.CompareAceParser-class.html
Bio.Motif.Parsers.AlignAce.CompareAceParser.parse	Bio.Motif.Parsers.AlignAce.CompareAceParser-class.html#parse
Bio.ParserSupport.AbstractParser.parse_file	Bio.ParserSupport.AbstractParser-class.html#parse_file
Bio.ParserSupport.AbstractParser.parse_str	Bio.ParserSupport.AbstractParser-class.html#parse_str
Bio.Motif.Parsers.AlignAce.CompareAceParser.__init__	Bio.Motif.Parsers.AlignAce.CompareAceParser-class.html#__init__
Bio.Motif.Parsers.AlignAce.CompareAceScanner	Bio.Motif.Parsers.AlignAce.CompareAceScanner-class.html
Bio.Motif.Parsers.AlignAce.CompareAceScanner.feed	Bio.Motif.Parsers.AlignAce.CompareAceScanner-class.html#feed
Bio.Motif.Parsers.MEME.MASTParser	Bio.Motif.Parsers.MEME.MASTParser-class.html
Bio.Motif.Parsers.MEME.MASTParser.parse	Bio.Motif.Parsers.MEME.MASTParser-class.html#parse
Bio.ParserSupport.AbstractParser.parse_file	Bio.ParserSupport.AbstractParser-class.html#parse_file
Bio.ParserSupport.AbstractParser.parse_str	Bio.ParserSupport.AbstractParser-class.html#parse_str
Bio.Motif.Parsers.MEME.MASTParser.__init__	Bio.Motif.Parsers.MEME.MASTParser-class.html#__init__
Bio.Motif.Parsers.MEME.MASTRecord	Bio.Motif.Parsers.MEME.MASTRecord-class.html
Bio.Motif.Parsers.MEME.MASTRecord.get_motif_by_name	Bio.Motif.Parsers.MEME.MASTRecord-class.html#get_motif_by_name
Bio.Motif.Parsers.MEME.MASTRecord.get_motif_matches	Bio.Motif.Parsers.MEME.MASTRecord-class.html#get_motif_matches
Bio.Motif.Parsers.MEME.MASTRecord._add_match	Bio.Motif.Parsers.MEME.MASTRecord-class.html#_add_match
Bio.Motif.Parsers.MEME.MASTRecord.get_motif_matches_for_sequence	Bio.Motif.Parsers.MEME.MASTRecord-class.html#get_motif_matches_for_sequence
Bio.Motif.Parsers.MEME.MASTRecord._version	Bio.Motif.Parsers.MEME.MASTRecord-class.html#_version
Bio.Motif.Parsers.MEME.MASTRecord._alphabet	Bio.Motif.Parsers.MEME.MASTRecord-class.html#_alphabet
Bio.Motif.Parsers.MEME.MASTRecord._add_sequence	Bio.Motif.Parsers.MEME.MASTRecord-class.html#_add_sequence
Bio.Motif.Parsers.MEME.MASTRecord._add_motif	Bio.Motif.Parsers.MEME.MASTRecord-class.html#_add_motif
Bio.Motif.Parsers.MEME.MASTRecord._database	Bio.Motif.Parsers.MEME.MASTRecord-class.html#_database
Bio.Motif.Parsers.MEME.MASTRecord._add_diagram_for_sequence	Bio.Motif.Parsers.MEME.MASTRecord-class.html#_add_diagram_for_sequence
Bio.Motif.Parsers.MEME.MASTRecord.__init__	Bio.Motif.Parsers.MEME.MASTRecord-class.html#__init__
Bio.Motif.Parsers.MEME.MEMEInstance	Bio.Motif.Parsers.MEME.MEMEInstance-class.html
Bio.Seq.Seq.transcribe	Bio.Seq.Seq-class.html#transcribe
Bio.Seq.Seq.__add__	Bio.Seq.Seq-class.html#__add__
Bio.Seq.Seq.lstrip	Bio.Seq.Seq-class.html#lstrip
Bio.Motif.Parsers.MEME.MEMEInstance._score	Bio.Motif.Parsers.MEME.MEMEInstance-class.html#_score
Bio.Seq.Seq.__str__	Bio.Seq.Seq-class.html#__str__
Bio.Motif.Parsers.MEME.MEMEInstance._seqname	Bio.Motif.Parsers.MEME.MEMEInstance-class.html#_seqname
Bio.Seq.Seq.__radd__	Bio.Seq.Seq-class.html#__radd__
Bio.Seq.Seq.endswith	Bio.Seq.Seq-class.html#endswith
Bio.Seq.Seq.strip	Bio.Seq.Seq-class.html#strip
Bio.Motif.Parsers.MEME.MEMEInstance._length	Bio.Motif.Parsers.MEME.MEMEInstance-class.html#_length
Bio.Motif.Parsers.MEME.MEMEInstance._motifname	Bio.Motif.Parsers.MEME.MEMEInstance-class.html#_motifname
Bio.Seq.Seq.find	Bio.Seq.Seq-class.html#find
Bio.Motif.Parsers.MEME.MEMEInstance.__init__	Bio.Motif.Parsers.MEME.MEMEInstance-class.html#__init__
Bio.Motif.Parsers.MEME.MEMEInstance._start	Bio.Motif.Parsers.MEME.MEMEInstance-class.html#_start
Bio.Seq.Seq.__contains__	Bio.Seq.Seq-class.html#__contains__
Bio.Seq.Seq.rsplit	Bio.Seq.Seq-class.html#rsplit
Bio.Seq.Seq.split	Bio.Seq.Seq-class.html#split
Bio.Seq.Seq.rstrip	Bio.Seq.Seq-class.html#rstrip
Bio.Seq.Seq._get_seq_str_and_check_alphabet	Bio.Seq.Seq-class.html#_get_seq_str_and_check_alphabet
Bio.Seq.Seq.translate	Bio.Seq.Seq-class.html#translate
Bio.Seq.Seq.__len__	Bio.Seq.Seq-class.html#__len__
Bio.Seq.Seq.startswith	Bio.Seq.Seq-class.html#startswith
Bio.Seq.Seq.__getitem__	Bio.Seq.Seq-class.html#__getitem__
Bio.Seq.Seq.complement	Bio.Seq.Seq-class.html#complement
Bio.Seq.Seq.tostring	Bio.Seq.Seq-class.html#tostring
Bio.Seq.Seq.tomutable	Bio.Seq.Seq-class.html#tomutable
Bio.Seq.Seq.data	Bio.Seq.Seq-class.html#data
Bio.Seq.Seq.count	Bio.Seq.Seq-class.html#count
Bio.Seq.Seq._set_data	Bio.Seq.Seq-class.html#_set_data
Bio.Seq.Seq.back_transcribe	Bio.Seq.Seq-class.html#back_transcribe
Bio.Seq.Seq.reverse_complement	Bio.Seq.Seq-class.html#reverse_complement
Bio.Motif.Parsers.MEME.MEMEInstance._strand	Bio.Motif.Parsers.MEME.MEMEInstance-class.html#_strand
Bio.Seq.Seq.rfind	Bio.Seq.Seq-class.html#rfind
Bio.Motif.Parsers.MEME.MEMEInstance._pvalue	Bio.Motif.Parsers.MEME.MEMEInstance-class.html#_pvalue
Bio.Seq.Seq.__repr__	Bio.Seq.Seq-class.html#__repr__
Bio.Motif.Parsers.MEME.MEMEMotif	Bio.Motif.Parsers.MEME.MEMEMotif-class.html
Bio.Motif._Motif.Motif.log_odds	Bio.Motif._Motif.Motif-class.html#log_odds
Bio.Motif.Parsers.MEME.MEMEMotif._evalue	Bio.Motif.Parsers.MEME.MEMEMotif-class.html#_evalue
Bio.Motif._Motif.Motif.__str__	Bio.Motif._Motif.Motif-class.html#__str__
Bio.Motif._Motif.Motif.exp_score	Bio.Motif._Motif.Motif-class.html#exp_score
Bio.Motif._Motif.Motif.set_mask	Bio.Motif._Motif.Motif-class.html#set_mask
Bio.Motif._Motif.Motif.dist_pearson	Bio.Motif._Motif.Motif-class.html#dist_pearson
Bio.Motif._Motif.Motif.ic	Bio.Motif._Motif.Motif-class.html#ic
Bio.Motif._Motif.Motif.dist_product_at	Bio.Motif._Motif.Motif-class.html#dist_product_at
Bio.Motif._Motif.Motif._write	Bio.Motif._Motif.Motif-class.html#_write
Bio.Motif.Parsers.MEME.MEMEMotif.__init__	Bio.Motif.Parsers.MEME.MEMEMotif-class.html#__init__
Bio.Motif._Motif.Motif._to_vertical_matrix	Bio.Motif._Motif.Motif-class.html#_to_vertical_matrix
Bio.Motif._Motif.Motif.dist_product	Bio.Motif._Motif.Motif-class.html#dist_product
Bio.Motif._Motif.Motif.min_score	Bio.Motif._Motif.Motif-class.html#min_score
Bio.Motif._Motif.Motif.anticonsensus	Bio.Motif._Motif.Motif-class.html#anticonsensus
Bio.Motif._Motif.Motif.reverse_complement	Bio.Motif._Motif.Motif-class.html#reverse_complement
Bio.Motif._Motif.Motif.add_instance	Bio.Motif._Motif.Motif-class.html#add_instance
Bio.Motif._Motif.Motif.make_instances_from_counts	Bio.Motif._Motif.Motif-class.html#make_instances_from_counts
Bio.Motif.Parsers.MEME.MEMEMotif._numoccurrences	Bio.Motif.Parsers.MEME.MEMEMotif-class.html#_numoccurrences
Bio.Motif._Motif.Motif.weblogo	Bio.Motif._Motif.Motif-class.html#weblogo
Bio.Motif._Motif.Motif.search_instances	Bio.Motif._Motif.Motif-class.html#search_instances
Bio.Motif.Parsers.MEME.MEMEMotif.get_instance_by_name	Bio.Motif.Parsers.MEME.MEMEMotif-class.html#get_instance_by_name
Bio.Motif._Motif.Motif._to_horizontal_matrix	Bio.Motif._Motif.Motif-class.html#_to_horizontal_matrix
Bio.Motif._Motif.Motif.__len__	Bio.Motif._Motif.Motif-class.html#__len__
Bio.Motif._Motif.Motif.search_pwm	Bio.Motif._Motif.Motif-class.html#search_pwm
Bio.Motif._Motif.Motif.__getitem__	Bio.Motif._Motif.Motif-class.html#__getitem__
Bio.Motif._Motif.Motif.format	Bio.Motif._Motif.Motif-class.html#format
Bio.Motif._Motif.Motif._check_length	Bio.Motif._Motif.Motif-class.html#_check_length
Bio.Motif._Motif.Motif._check_alphabet	Bio.Motif._Motif.Motif-class.html#_check_alphabet
Bio.Motif._Motif.Motif.make_counts_from_instances	Bio.Motif._Motif.Motif-class.html#make_counts_from_instances
Bio.Motif._Motif.Motif._to_jaspar_pfm	Bio.Motif._Motif.Motif-class.html#_to_jaspar_pfm
Bio.Motif.Parsers.MEME.MEMEMotif.add_instance_from_values	Bio.Motif.Parsers.MEME.MEMEMotif-class.html#add_instance_from_values
Bio.Motif._Motif.Motif._from_jaspar_sites	Bio.Motif._Motif.Motif-class.html#_from_jaspar_sites
Bio.Motif._Motif.Motif.pwm	Bio.Motif._Motif.Motif-class.html#pwm
Bio.Motif._Motif.Motif.max_score	Bio.Motif._Motif.Motif-class.html#max_score
Bio.Motif._Motif.Motif._from_horiz_matrix	Bio.Motif._Motif.Motif-class.html#_from_horiz_matrix
Bio.Motif._Motif.Motif.score_hit	Bio.Motif._Motif.Motif-class.html#score_hit
Bio.Motif._Motif.Motif._to_fasta	Bio.Motif._Motif.Motif-class.html#_to_fasta
Bio.Motif._Motif.Motif._from_vert_matrix	Bio.Motif._Motif.Motif-class.html#_from_vert_matrix
Bio.Motif._Motif.Motif.dist_dpq	Bio.Motif._Motif.Motif-class.html#dist_dpq
Bio.Motif._Motif.Motif._read	Bio.Motif._Motif.Motif-class.html#_read
Bio.Motif._Motif.Motif.dist_dpq_at	Bio.Motif._Motif.Motif-class.html#dist_dpq_at
Bio.Motif._Motif.Motif.dist_pearson_at	Bio.Motif._Motif.Motif-class.html#dist_pearson_at
Bio.Motif._Motif.Motif.consensus	Bio.Motif._Motif.Motif-class.html#consensus
Bio.Motif._Motif.Motif.scanPWM	Bio.Motif._Motif.Motif-class.html#scanPWM
Bio.Motif._Motif.Motif._to_transfac	Bio.Motif._Motif.Motif-class.html#_to_transfac
Bio.Motif._Motif.Motif._from_jaspar_pfm	Bio.Motif._Motif.Motif-class.html#_from_jaspar_pfm
Bio.Motif.Parsers.MEME.MEMEParser	Bio.Motif.Parsers.MEME.MEMEParser-class.html
Bio.Motif.Parsers.MEME.MEMEParser.parse	Bio.Motif.Parsers.MEME.MEMEParser-class.html#parse
Bio.ParserSupport.AbstractParser.parse_file	Bio.ParserSupport.AbstractParser-class.html#parse_file
Bio.ParserSupport.AbstractParser.parse_str	Bio.ParserSupport.AbstractParser-class.html#parse_str
Bio.Motif.Parsers.MEME.MEMEParser.__init__	Bio.Motif.Parsers.MEME.MEMEParser-class.html#__init__
Bio.Motif.Parsers.MEME.MEMERecord	Bio.Motif.Parsers.MEME.MEMERecord-class.html
Bio.Motif.Parsers.MEME.MEMERecord.get_motif_by_name	Bio.Motif.Parsers.MEME.MEMERecord-class.html#get_motif_by_name
Bio.Motif.Parsers.MEME.MEMERecord.__init__	Bio.Motif.Parsers.MEME.MEMERecord-class.html#__init__
Bio.Motif.Parsers.MEME._MASTConsumer	Bio.Motif.Parsers.MEME._MASTConsumer-class.html
Bio.Motif.Parsers.MEME._MASTConsumer._parse_buffer	Bio.Motif.Parsers.MEME._MASTConsumer-class.html#_parse_buffer
Bio.Motif.Parsers.MEME._MASTConsumer._collapse_buffer	Bio.Motif.Parsers.MEME._MASTConsumer-class.html#_collapse_buffer
Bio.Motif.Parsers.MEME._MASTConsumer._version	Bio.Motif.Parsers.MEME._MASTConsumer-class.html#_version
Bio.Motif.Parsers.MEME._MASTConsumer._add_match_diagram	Bio.Motif.Parsers.MEME._MASTConsumer-class.html#_add_match_diagram
Bio.Motif.Parsers.MEME._MASTConsumer._add_diagram_from_buffer	Bio.Motif.Parsers.MEME._MASTConsumer-class.html#_add_diagram_from_buffer
Bio.Motif.Parsers.MEME._MASTConsumer._add_line_to_buffer	Bio.Motif.Parsers.MEME._MASTConsumer-class.html#_add_line_to_buffer
Bio.Motif.Parsers.MEME._MASTConsumer._add_motif_match	Bio.Motif.Parsers.MEME._MASTConsumer-class.html#_add_motif_match
Bio.Motif.Parsers.MEME._MASTConsumer._add_motif	Bio.Motif.Parsers.MEME._MASTConsumer-class.html#_add_motif
Bio.Motif.Parsers.MEME._MASTConsumer._database	Bio.Motif.Parsers.MEME._MASTConsumer-class.html#_database
Bio.Motif.Parsers.MEME._MASTConsumer.noevent	Bio.Motif.Parsers.MEME._MASTConsumer-class.html#noevent
Bio.Motif.Parsers.MEME._MASTConsumer._blank_buffer	Bio.Motif.Parsers.MEME._MASTConsumer-class.html#_blank_buffer
Bio.Motif.Parsers.MEME._MASTConsumer._set_current_seq	Bio.Motif.Parsers.MEME._MASTConsumer-class.html#_set_current_seq
Bio.Motif.Parsers.MEME._MASTConsumer.__init__	Bio.Motif.Parsers.MEME._MASTConsumer-class.html#__init__
Bio.Motif.Parsers.MEME._MASTConsumer._add_sequence_match_with_diagram	Bio.Motif.Parsers.MEME._MASTConsumer-class.html#_add_sequence_match_with_diagram
Bio.Motif.Parsers.MEME._MASTScanner	Bio.Motif.Parsers.MEME._MASTScanner-class.html
Bio.Motif.Parsers.MEME._MASTScanner.feed	Bio.Motif.Parsers.MEME._MASTScanner-class.html#feed
Bio.Motif.Parsers.MEME._MASTScanner._scan_annotated_matches	Bio.Motif.Parsers.MEME._MASTScanner-class.html#_scan_annotated_matches
Bio.Motif.Parsers.MEME._MASTScanner._scan_header	Bio.Motif.Parsers.MEME._MASTScanner-class.html#_scan_header
Bio.Motif.Parsers.MEME._MASTScanner._scan_matches	Bio.Motif.Parsers.MEME._MASTScanner-class.html#_scan_matches
Bio.Motif.Parsers.MEME._MEMEConsumer	Bio.Motif.Parsers.MEME._MEMEConsumer-class.html
Bio.Motif.Parsers.MEME._MEMEConsumer._datafile	Bio.Motif.Parsers.MEME._MEMEConsumer-class.html#_datafile
Bio.Motif.Parsers.MEME._MEMEConsumer._sequence_name	Bio.Motif.Parsers.MEME._MEMEConsumer-class.html#_sequence_name
Bio.Motif.Parsers.MEME._MEMEConsumer.add_to_pssm	Bio.Motif.Parsers.MEME._MEMEConsumer-class.html#add_to_pssm
Bio.Motif.Parsers.MEME._MEMEConsumer._commandline	Bio.Motif.Parsers.MEME._MEMEConsumer-class.html#_commandline
Bio.Motif.Parsers.MEME._MEMEConsumer.add_instance	Bio.Motif.Parsers.MEME._MEMEConsumer-class.html#add_instance
Bio.Motif.Parsers.MEME._MEMEConsumer._version	Bio.Motif.Parsers.MEME._MEMEConsumer-class.html#_version
Bio.Motif.Parsers.MEME._MEMEConsumer._alphabet	Bio.Motif.Parsers.MEME._MEMEConsumer-class.html#_alphabet
Bio.Motif.Parsers.MEME._MEMEConsumer.__init__	Bio.Motif.Parsers.MEME._MEMEConsumer-class.html#__init__
Bio.Motif.Parsers.MEME._MEMEConsumer.noevent	Bio.Motif.Parsers.MEME._MEMEConsumer-class.html#noevent
Bio.Motif.Parsers.MEME._MEMEConsumer.add_to_logodds	Bio.Motif.Parsers.MEME._MEMEConsumer-class.html#add_to_logodds
Bio.Motif.Parsers.MEME._MEMEConsumer.motif_name	Bio.Motif.Parsers.MEME._MEMEConsumer-class.html#motif_name
Bio.Motif.Parsers.MEME._MEMEConsumer._add_motif_with_info	Bio.Motif.Parsers.MEME._MEMEConsumer-class.html#_add_motif_with_info
Bio.Motif.Parsers.MEME._MEMEScanner	Bio.Motif.Parsers.MEME._MEMEScanner-class.html
Bio.Motif.Parsers.MEME._MEMEScanner.feed	Bio.Motif.Parsers.MEME._MEMEScanner-class.html#feed
Bio.Motif.Parsers.MEME._MEMEScanner._scan_header	Bio.Motif.Parsers.MEME._MEMEScanner-class.html#_scan_header
Bio.Motif.Parsers.MEME._MEMEScanner._scan_motifs	Bio.Motif.Parsers.MEME._MEMEScanner-class.html#_scan_motifs
Bio.Motif.Thresholds.ScoreDistribution	Bio.Motif.Thresholds.ScoreDistribution-class.html
Bio.Motif.Thresholds.ScoreDistribution.threshold_patser	Bio.Motif.Thresholds.ScoreDistribution-class.html#threshold_patser
Bio.Motif.Thresholds.ScoreDistribution.threshold_fnr	Bio.Motif.Thresholds.ScoreDistribution-class.html#threshold_fnr
Bio.Motif.Thresholds.ScoreDistribution._index_diff	Bio.Motif.Thresholds.ScoreDistribution-class.html#_index_diff
Bio.Motif.Thresholds.ScoreDistribution.modify	Bio.Motif.Thresholds.ScoreDistribution-class.html#modify
Bio.Motif.Thresholds.ScoreDistribution._add	Bio.Motif.Thresholds.ScoreDistribution-class.html#_add
Bio.Motif.Thresholds.ScoreDistribution.__init__	Bio.Motif.Thresholds.ScoreDistribution-class.html#__init__
Bio.Motif.Thresholds.ScoreDistribution.threshold_fpr	Bio.Motif.Thresholds.ScoreDistribution-class.html#threshold_fpr
Bio.Motif.Thresholds.ScoreDistribution.threshold_balanced	Bio.Motif.Thresholds.ScoreDistribution-class.html#threshold_balanced
Bio.Motif._Motif.Motif	Bio.Motif._Motif.Motif-class.html
Bio.Motif._Motif.Motif.dist_dpq_at	Bio.Motif._Motif.Motif-class.html#dist_dpq_at
Bio.Motif._Motif.Motif.__str__	Bio.Motif._Motif.Motif-class.html#__str__
Bio.Motif._Motif.Motif.search_pwm	Bio.Motif._Motif.Motif-class.html#search_pwm
Bio.Motif._Motif.Motif.dist_pearson	Bio.Motif._Motif.Motif-class.html#dist_pearson
Bio.Motif._Motif.Motif.ic	Bio.Motif._Motif.Motif-class.html#ic
Bio.Motif._Motif.Motif.dist_product_at	Bio.Motif._Motif.Motif-class.html#dist_product_at
Bio.Motif._Motif.Motif._from_jaspar_sites	Bio.Motif._Motif.Motif-class.html#_from_jaspar_sites
Bio.Motif._Motif.Motif.__init__	Bio.Motif._Motif.Motif-class.html#__init__
Bio.Motif._Motif.Motif._to_vertical_matrix	Bio.Motif._Motif.Motif-class.html#_to_vertical_matrix
Bio.Motif._Motif.Motif.consensus	Bio.Motif._Motif.Motif-class.html#consensus
Bio.Motif._Motif.Motif.min_score	Bio.Motif._Motif.Motif-class.html#min_score
Bio.Motif._Motif.Motif.anticonsensus	Bio.Motif._Motif.Motif-class.html#anticonsensus
Bio.Motif._Motif.Motif.reverse_complement	Bio.Motif._Motif.Motif-class.html#reverse_complement
Bio.Motif._Motif.Motif.add_instance	Bio.Motif._Motif.Motif-class.html#add_instance
Bio.Motif._Motif.Motif.format	Bio.Motif._Motif.Motif-class.html#format
Bio.Motif._Motif.Motif._from_jaspar_pfm	Bio.Motif._Motif.Motif-class.html#_from_jaspar_pfm
Bio.Motif._Motif.Motif.weblogo	Bio.Motif._Motif.Motif-class.html#weblogo
Bio.Motif._Motif.Motif.search_instances	Bio.Motif._Motif.Motif-class.html#search_instances
Bio.Motif._Motif.Motif._from_vert_matrix	Bio.Motif._Motif.Motif-class.html#_from_vert_matrix
Bio.Motif._Motif.Motif._to_horizontal_matrix	Bio.Motif._Motif.Motif-class.html#_to_horizontal_matrix
Bio.Motif._Motif.Motif.__len__	Bio.Motif._Motif.Motif-class.html#__len__
Bio.Motif._Motif.Motif.set_mask	Bio.Motif._Motif.Motif-class.html#set_mask
Bio.Motif._Motif.Motif.__getitem__	Bio.Motif._Motif.Motif-class.html#__getitem__
Bio.Motif._Motif.Motif.make_instances_from_counts	Bio.Motif._Motif.Motif-class.html#make_instances_from_counts
Bio.Motif._Motif.Motif._check_length	Bio.Motif._Motif.Motif-class.html#_check_length
Bio.Motif._Motif.Motif._check_alphabet	Bio.Motif._Motif.Motif-class.html#_check_alphabet
Bio.Motif._Motif.Motif.make_counts_from_instances	Bio.Motif._Motif.Motif-class.html#make_counts_from_instances
Bio.Motif._Motif.Motif._to_jaspar_pfm	Bio.Motif._Motif.Motif-class.html#_to_jaspar_pfm
Bio.Motif._Motif.Motif._to_transfac	Bio.Motif._Motif.Motif-class.html#_to_transfac
Bio.Motif._Motif.Motif._write	Bio.Motif._Motif.Motif-class.html#_write
Bio.Motif._Motif.Motif.pwm	Bio.Motif._Motif.Motif-class.html#pwm
Bio.Motif._Motif.Motif.max_score	Bio.Motif._Motif.Motif-class.html#max_score
Bio.Motif._Motif.Motif._from_horiz_matrix	Bio.Motif._Motif.Motif-class.html#_from_horiz_matrix
Bio.Motif._Motif.Motif.score_hit	Bio.Motif._Motif.Motif-class.html#score_hit
Bio.Motif._Motif.Motif.dist_dpq	Bio.Motif._Motif.Motif-class.html#dist_dpq
Bio.Motif._Motif.Motif._read	Bio.Motif._Motif.Motif-class.html#_read
Bio.Motif._Motif.Motif.log_odds	Bio.Motif._Motif.Motif-class.html#log_odds
Bio.Motif._Motif.Motif.dist_pearson_at	Bio.Motif._Motif.Motif-class.html#dist_pearson_at
Bio.Motif._Motif.Motif.dist_product	Bio.Motif._Motif.Motif-class.html#dist_product
Bio.Motif._Motif.Motif.scanPWM	Bio.Motif._Motif.Motif-class.html#scanPWM
Bio.Motif._Motif.Motif._to_fasta	Bio.Motif._Motif.Motif-class.html#_to_fasta
Bio.Motif._Motif.Motif.exp_score	Bio.Motif._Motif.Motif-class.html#exp_score
Bio.NMR.xpktools.Peaklist	Bio.NMR.xpktools.Peaklist-class.html
Bio.NMR.xpktools.Peaklist.residue_dict	Bio.NMR.xpktools.Peaklist-class.html#residue_dict
Bio.NMR.xpktools.Peaklist.write_header	Bio.NMR.xpktools.Peaklist-class.html#write_header
Bio.NMR.xpktools.Peaklist.__init__	Bio.NMR.xpktools.Peaklist-class.html#__init__
Bio.NMR.xpktools.XpkEntry	Bio.NMR.xpktools.XpkEntry-class.html
Bio.NMR.xpktools.XpkEntry.__init__	Bio.NMR.xpktools.XpkEntry-class.html#__init__
Bio.NaiveBayes.NaiveBayes	Bio.NaiveBayes.NaiveBayes-class.html
Bio.NaiveBayes.NaiveBayes.__init__	Bio.NaiveBayes.NaiveBayes-class.html#__init__
Bio.Ndb.NdbParser	Bio.Ndb.NdbParser-class.html
Bio.Ndb.NdbParser.feed	Bio.Ndb.NdbParser-class.html#feed
Bio.Ndb.NdbParser.start_li	Bio.Ndb.NdbParser-class.html#start_li
Bio.Ndb.NdbParser.start_ul	Bio.Ndb.NdbParser-class.html#start_ul
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Bio.Ndb.NdbParser.end_h1	Bio.Ndb.NdbParser-class.html#end_h1
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Bio.Ndb.NdbParser._parse_chain	Bio.Ndb.NdbParser-class.html#_parse_chain
Bio.Ndb.NdbParser.end_ul	Bio.Ndb.NdbParser-class.html#end_ul
Bio.Ndb.NdbParser.end_i	Bio.Ndb.NdbParser-class.html#end_i
Bio.Ndb.NdbParser.do_br	Bio.Ndb.NdbParser-class.html#do_br
Bio.Ndb.NdbParser.start_h2	Bio.Ndb.NdbParser-class.html#start_h2
Bio.Ndb.NdbParser.start_h1	Bio.Ndb.NdbParser-class.html#start_h1
Bio.Ndb.NdbParser.start_sub	Bio.Ndb.NdbParser-class.html#start_sub
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Bio.Ndb.NdbParser.parse	Bio.Ndb.NdbParser-class.html#parse
Bio.Ndb.NdbParser.start_i	Bio.Ndb.NdbParser-class.html#start_i
Bio.Ndb.NdbParser.handle_data	Bio.Ndb.NdbParser-class.html#handle_data
Bio.Ndb.Record	Bio.Ndb.Record-class.html
Bio.Ndb.Record.__str__	Bio.Ndb.Record-class.html#__str__
Bio.Ndb.Record.__init__	Bio.Ndb.Record-class.html#__init__
Bio.NetCatch.ExtractUrls	Bio.NetCatch.ExtractUrls-class.html
Bio.NetCatch.ExtractUrls.feed	Bio.NetCatch.ExtractUrls-class.html#feed
Bio.NetCatch.ExtractUrls.__str__	Bio.NetCatch.ExtractUrls-class.html#__str__
Bio.NetCatch.ExtractUrls.extract_urls	Bio.NetCatch.ExtractUrls-class.html#extract_urls
Bio.NetCatch.ExtractUrls.__init__	Bio.NetCatch.ExtractUrls-class.html#__init__
Bio.NetCatch.ExtractUrls.end_a	Bio.NetCatch.ExtractUrls-class.html#end_a
Bio.NetCatch.ExtractUrls.reset	Bio.NetCatch.ExtractUrls-class.html#reset
Bio.NetCatch.ExtractUrls.start_a	Bio.NetCatch.ExtractUrls-class.html#start_a
Bio.NetCatch.ExtractUrls.handle_data	Bio.NetCatch.ExtractUrls-class.html#handle_data
Bio.NetCatch.NetCatch	Bio.NetCatch.NetCatch-class.html
Bio.NetCatch.NetCatch.get_urls_by_range	Bio.NetCatch.NetCatch-class.html#get_urls_by_range
Bio.NetCatch.NetCatch.add_url	Bio.NetCatch.NetCatch-class.html#add_url
Bio.NetCatch.NetCatch.get_all_urls	Bio.NetCatch.NetCatch-class.html#get_all_urls
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Bio.NetCatch.NetCatch._build_path	Bio.NetCatch.NetCatch-class.html#_build_path
Bio.NetCatch.NetCatch.get_urls_by_index	Bio.NetCatch.NetCatch-class.html#get_urls_by_index
Bio.NetCatch.NetCatch.import_dict	Bio.NetCatch.NetCatch-class.html#import_dict
Bio.NetCatch.NetCatch.get_urls_by_label	Bio.NetCatch.NetCatch-class.html#get_urls_by_label
Bio.NetCatch.NetCatch.__init__	Bio.NetCatch.NetCatch-class.html#__init__
Bio.NetCatch.Url	Bio.NetCatch.Url-class.html
Bio.NetCatch.Url.__init__	Bio.NetCatch.Url-class.html#__init__
Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer	Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer-class.html
Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer.set_weight	Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer-class.html#set_weight
Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer.__str__	Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer-class.html#__str__
Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer.__init__	Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer-class.html#__init__
Bio.NeuralNetwork.BackPropagation.Layer.HiddenLayer	Bio.NeuralNetwork.BackPropagation.Layer.HiddenLayer-class.html
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Bio.NeuralNetwork.BackPropagation.Layer.HiddenLayer.backpropagate	Bio.NeuralNetwork.BackPropagation.Layer.HiddenLayer-class.html#backpropagate
Bio.NeuralNetwork.BackPropagation.Layer.HiddenLayer.update	Bio.NeuralNetwork.BackPropagation.Layer.HiddenLayer-class.html#update
Bio.NeuralNetwork.BackPropagation.Layer.HiddenLayer.__init__	Bio.NeuralNetwork.BackPropagation.Layer.HiddenLayer-class.html#__init__
Bio.NeuralNetwork.BackPropagation.Layer.InputLayer	Bio.NeuralNetwork.BackPropagation.Layer.InputLayer-class.html
Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer.set_weight	Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer-class.html#set_weight
Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer.__str__	Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer-class.html#__str__
Bio.NeuralNetwork.BackPropagation.Layer.InputLayer.backpropagate	Bio.NeuralNetwork.BackPropagation.Layer.InputLayer-class.html#backpropagate
Bio.NeuralNetwork.BackPropagation.Layer.InputLayer.update	Bio.NeuralNetwork.BackPropagation.Layer.InputLayer-class.html#update
Bio.NeuralNetwork.BackPropagation.Layer.InputLayer.__init__	Bio.NeuralNetwork.BackPropagation.Layer.InputLayer-class.html#__init__
Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer	Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer-class.html
Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer.__str__	Bio.NeuralNetwork.BackPropagation.Layer.AbstractLayer-class.html#__str__
Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer.backpropagate	Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer-class.html#backpropagate
Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer.update	Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer-class.html#update
Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer.set_weight	Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer-class.html#set_weight
Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer.get_error	Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer-class.html#get_error
Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer.__init__	Bio.NeuralNetwork.BackPropagation.Layer.OutputLayer-class.html#__init__
Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork	Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork-class.html
Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork.predict	Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork-class.html#predict
Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork.train	Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork-class.html#train
Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork.__init__	Bio.NeuralNetwork.BackPropagation.Network.BasicNetwork-class.html#__init__
Bio.NeuralNetwork.Gene.Motif.MotifCoder	Bio.NeuralNetwork.Gene.Motif.MotifCoder-class.html
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Bio.NeuralNetwork.Gene.Motif.MotifCoder.__init__	Bio.NeuralNetwork.Gene.Motif.MotifCoder-class.html#__init__
Bio.NeuralNetwork.Gene.Motif.MotifFinder	Bio.NeuralNetwork.Gene.Motif.MotifFinder-class.html
Bio.NeuralNetwork.Gene.Motif.MotifFinder.__init__	Bio.NeuralNetwork.Gene.Motif.MotifFinder-class.html#__init__
Bio.NeuralNetwork.Gene.Motif.MotifFinder._get_motif_dict	Bio.NeuralNetwork.Gene.Motif.MotifFinder-class.html#_get_motif_dict
Bio.NeuralNetwork.Gene.Motif.MotifFinder.find_differences	Bio.NeuralNetwork.Gene.Motif.MotifFinder-class.html#find_differences
Bio.NeuralNetwork.Gene.Motif.MotifFinder.find	Bio.NeuralNetwork.Gene.Motif.MotifFinder-class.html#find
Bio.NeuralNetwork.Gene.Motif.MotifFinder._add_motif	Bio.NeuralNetwork.Gene.Motif.MotifFinder-class.html#_add_motif
Bio.NeuralNetwork.Gene.Pattern.PatternIO	Bio.NeuralNetwork.Gene.Pattern.PatternIO-class.html
Bio.NeuralNetwork.Gene.Pattern.PatternIO.read	Bio.NeuralNetwork.Gene.Pattern.PatternIO-class.html#read
Bio.NeuralNetwork.Gene.Pattern.PatternIO.write	Bio.NeuralNetwork.Gene.Pattern.PatternIO-class.html#write
Bio.NeuralNetwork.Gene.Pattern.PatternIO.write_seq	Bio.NeuralNetwork.Gene.Pattern.PatternIO-class.html#write_seq
Bio.NeuralNetwork.Gene.Pattern.PatternIO.__init__	Bio.NeuralNetwork.Gene.Pattern.PatternIO-class.html#__init__
Bio.NeuralNetwork.Gene.Pattern.PatternRepository	Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html
Bio.NeuralNetwork.Gene.Pattern.PatternRepository.count	Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html#count
Bio.NeuralNetwork.Gene.Pattern.PatternRepository.get_top_percentage	Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html#get_top_percentage
Bio.NeuralNetwork.Gene.Pattern.PatternRepository.get_all	Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html#get_all
Bio.NeuralNetwork.Gene.Pattern.PatternRepository.get_random	Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html#get_random
Bio.NeuralNetwork.Gene.Pattern.PatternRepository.get_top	Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html#get_top
Bio.NeuralNetwork.Gene.Pattern.PatternRepository.get_differing	Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html#get_differing
Bio.NeuralNetwork.Gene.Pattern.PatternRepository.remove_polyA	Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html#remove_polyA
Bio.NeuralNetwork.Gene.Pattern.PatternRepository.__init__	Bio.NeuralNetwork.Gene.Pattern.PatternRepository-class.html#__init__
Bio.NeuralNetwork.Gene.Schema.DifferentialSchemaFitness	Bio.NeuralNetwork.Gene.Schema.DifferentialSchemaFitness-class.html
Bio.NeuralNetwork.Gene.Schema.DifferentialSchemaFitness.calculate_fitness	Bio.NeuralNetwork.Gene.Schema.DifferentialSchemaFitness-class.html#calculate_fitness
Bio.NeuralNetwork.Gene.Schema.DifferentialSchemaFitness.__init__	Bio.NeuralNetwork.Gene.Schema.DifferentialSchemaFitness-class.html#__init__
Bio.NeuralNetwork.Gene.Schema.GeneticAlgorithmFinder	Bio.NeuralNetwork.Gene.Schema.GeneticAlgorithmFinder-class.html
Bio.NeuralNetwork.Gene.Schema.GeneticAlgorithmFinder.find_schemas	Bio.NeuralNetwork.Gene.Schema.GeneticAlgorithmFinder-class.html#find_schemas
Bio.NeuralNetwork.Gene.Schema.GeneticAlgorithmFinder._set_up_genetic_algorithm	Bio.NeuralNetwork.Gene.Schema.GeneticAlgorithmFinder-class.html#_set_up_genetic_algorithm
Bio.NeuralNetwork.Gene.Schema.GeneticAlgorithmFinder.__init__	Bio.NeuralNetwork.Gene.Schema.GeneticAlgorithmFinder-class.html#__init__
Bio.NeuralNetwork.Gene.Schema.MostCountSchemaFitness	Bio.NeuralNetwork.Gene.Schema.MostCountSchemaFitness-class.html
Bio.NeuralNetwork.Gene.Schema.MostCountSchemaFitness.calculate_fitness	Bio.NeuralNetwork.Gene.Schema.MostCountSchemaFitness-class.html#calculate_fitness
Bio.NeuralNetwork.Gene.Schema.MostCountSchemaFitness.__init__	Bio.NeuralNetwork.Gene.Schema.MostCountSchemaFitness-class.html#__init__
Bio.NeuralNetwork.Gene.Schema.RandomMotifGenerator	Bio.NeuralNetwork.Gene.Schema.RandomMotifGenerator-class.html
Bio.NeuralNetwork.Gene.Schema.RandomMotifGenerator.random_motif	Bio.NeuralNetwork.Gene.Schema.RandomMotifGenerator-class.html#random_motif
Bio.NeuralNetwork.Gene.Schema.RandomMotifGenerator.__init__	Bio.NeuralNetwork.Gene.Schema.RandomMotifGenerator-class.html#__init__
Bio.NeuralNetwork.Gene.Schema.Schema	Bio.NeuralNetwork.Gene.Schema.Schema-class.html
Bio.NeuralNetwork.Gene.Schema.Schema.encode_motif	Bio.NeuralNetwork.Gene.Schema.Schema-class.html#encode_motif
Bio.NeuralNetwork.Gene.Schema.Schema.num_ambiguous	Bio.NeuralNetwork.Gene.Schema.Schema-class.html#num_ambiguous
Bio.NeuralNetwork.Gene.Schema.Schema.find_matches	Bio.NeuralNetwork.Gene.Schema.Schema-class.html#find_matches
Bio.NeuralNetwork.Gene.Schema.Schema.all_unambiguous	Bio.NeuralNetwork.Gene.Schema.Schema-class.html#all_unambiguous
Bio.NeuralNetwork.Gene.Schema.Schema.find_ambiguous	Bio.NeuralNetwork.Gene.Schema.Schema-class.html#find_ambiguous
Bio.NeuralNetwork.Gene.Schema.Schema.num_matches	Bio.NeuralNetwork.Gene.Schema.Schema-class.html#num_matches
Bio.NeuralNetwork.Gene.Schema.Schema.__init__	Bio.NeuralNetwork.Gene.Schema.Schema-class.html#__init__
Bio.NeuralNetwork.Gene.Schema.SchemaCoder	Bio.NeuralNetwork.Gene.Schema.SchemaCoder-class.html
Bio.NeuralNetwork.Gene.Schema.SchemaCoder.representation	Bio.NeuralNetwork.Gene.Schema.SchemaCoder-class.html#representation
Bio.NeuralNetwork.Gene.Schema.SchemaCoder.__init__	Bio.NeuralNetwork.Gene.Schema.SchemaCoder-class.html#__init__
Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet	Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet.alphabet_matches	Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet-class.html#alphabet_matches
Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet.letters	Bio.NeuralNetwork.Gene.Schema.SchemaDNAAlphabet-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.Alphabet.size	Bio.Alphabet.Alphabet-class.html#size
Bio.NeuralNetwork.Gene.Schema.SchemaFactory	Bio.NeuralNetwork.Gene.Schema.SchemaFactory-class.html
Bio.NeuralNetwork.Gene.Schema.SchemaFactory._schema_from_motif	Bio.NeuralNetwork.Gene.Schema.SchemaFactory-class.html#_schema_from_motif
Bio.NeuralNetwork.Gene.Schema.SchemaFactory.from_motifs	Bio.NeuralNetwork.Gene.Schema.SchemaFactory-class.html#from_motifs
Bio.NeuralNetwork.Gene.Schema.SchemaFactory.from_signatures	Bio.NeuralNetwork.Gene.Schema.SchemaFactory-class.html#from_signatures
Bio.NeuralNetwork.Gene.Schema.SchemaFactory._get_unique_schema	Bio.NeuralNetwork.Gene.Schema.SchemaFactory-class.html#_get_unique_schema
Bio.NeuralNetwork.Gene.Schema.SchemaFactory._get_num_motifs	Bio.NeuralNetwork.Gene.Schema.SchemaFactory-class.html#_get_num_motifs
Bio.NeuralNetwork.Gene.Schema.SchemaFactory.__init__	Bio.NeuralNetwork.Gene.Schema.SchemaFactory-class.html#__init__
Bio.NeuralNetwork.Gene.Schema.SchemaFinder	Bio.NeuralNetwork.Gene.Schema.SchemaFinder-class.html
Bio.NeuralNetwork.Gene.Schema.SchemaFinder.find_differences	Bio.NeuralNetwork.Gene.Schema.SchemaFinder-class.html#find_differences
Bio.NeuralNetwork.Gene.Schema.SchemaFinder.find	Bio.NeuralNetwork.Gene.Schema.SchemaFinder-class.html#find
Bio.NeuralNetwork.Gene.Schema.SchemaFinder.__init__	Bio.NeuralNetwork.Gene.Schema.SchemaFinder-class.html#__init__
Bio.NeuralNetwork.Gene.Schema.SimpleFinisher	Bio.NeuralNetwork.Gene.Schema.SimpleFinisher-class.html
Bio.NeuralNetwork.Gene.Schema.SimpleFinisher.is_finished	Bio.NeuralNetwork.Gene.Schema.SimpleFinisher-class.html#is_finished
Bio.NeuralNetwork.Gene.Schema.SimpleFinisher.__init__	Bio.NeuralNetwork.Gene.Schema.SimpleFinisher-class.html#__init__
Bio.NeuralNetwork.Gene.Signature.SignatureCoder	Bio.NeuralNetwork.Gene.Signature.SignatureCoder-class.html
Bio.NeuralNetwork.Gene.Signature.SignatureCoder.representation	Bio.NeuralNetwork.Gene.Signature.SignatureCoder-class.html#representation
Bio.NeuralNetwork.Gene.Signature.SignatureCoder.__init__	Bio.NeuralNetwork.Gene.Signature.SignatureCoder-class.html#__init__
Bio.NeuralNetwork.Gene.Signature.SignatureFinder	Bio.NeuralNetwork.Gene.Signature.SignatureFinder-class.html
Bio.NeuralNetwork.Gene.Signature.SignatureFinder.__init__	Bio.NeuralNetwork.Gene.Signature.SignatureFinder-class.html#__init__
Bio.NeuralNetwork.Gene.Signature.SignatureFinder._add_sig	Bio.NeuralNetwork.Gene.Signature.SignatureFinder-class.html#_add_sig
Bio.NeuralNetwork.Gene.Signature.SignatureFinder.find	Bio.NeuralNetwork.Gene.Signature.SignatureFinder-class.html#find
Bio.NeuralNetwork.Gene.Signature.SignatureFinder._get_signature_dict	Bio.NeuralNetwork.Gene.Signature.SignatureFinder-class.html#_get_signature_dict
Bio.NeuralNetwork.StopTraining.ValidationIncreaseStop	Bio.NeuralNetwork.StopTraining.ValidationIncreaseStop-class.html
Bio.NeuralNetwork.StopTraining.ValidationIncreaseStop.stopping_criteria	Bio.NeuralNetwork.StopTraining.ValidationIncreaseStop-class.html#stopping_criteria
Bio.NeuralNetwork.StopTraining.ValidationIncreaseStop.__init__	Bio.NeuralNetwork.StopTraining.ValidationIncreaseStop-class.html#__init__
Bio.NeuralNetwork.Training.ExampleManager	Bio.NeuralNetwork.Training.ExampleManager-class.html
Bio.NeuralNetwork.Training.ExampleManager.add_examples	Bio.NeuralNetwork.Training.ExampleManager-class.html#add_examples
Bio.NeuralNetwork.Training.ExampleManager.__init__	Bio.NeuralNetwork.Training.ExampleManager-class.html#__init__
Bio.NeuralNetwork.Training.TrainingExample	Bio.NeuralNetwork.Training.TrainingExample-class.html
Bio.NeuralNetwork.Training.TrainingExample.__init__	Bio.NeuralNetwork.Training.TrainingExample-class.html#__init__
Bio.Nexus.Nexus.Block	Bio.Nexus.Nexus.Block-class.html
Bio.Nexus.Nexus.Block.__init__	Bio.Nexus.Nexus.Block-class.html#__init__
Bio.Nexus.Nexus.CharBuffer	Bio.Nexus.Nexus.CharBuffer-class.html
Bio.Nexus.Nexus.CharBuffer.peek	Bio.Nexus.Nexus.CharBuffer-class.html#peek
Bio.Nexus.Nexus.CharBuffer.next_nonwhitespace	Bio.Nexus.Nexus.CharBuffer-class.html#next_nonwhitespace
Bio.Nexus.Nexus.CharBuffer.skip_whitespace	Bio.Nexus.Nexus.CharBuffer-class.html#skip_whitespace
Bio.Nexus.Nexus.CharBuffer.rest	Bio.Nexus.Nexus.CharBuffer-class.html#rest
Bio.Nexus.Nexus.CharBuffer.next	Bio.Nexus.Nexus.CharBuffer-class.html#next
Bio.Nexus.Nexus.CharBuffer.next_word	Bio.Nexus.Nexus.CharBuffer-class.html#next_word
Bio.Nexus.Nexus.CharBuffer.peek_nonwhitespace	Bio.Nexus.Nexus.CharBuffer-class.html#peek_nonwhitespace
Bio.Nexus.Nexus.CharBuffer.peek_word	Bio.Nexus.Nexus.CharBuffer-class.html#peek_word
Bio.Nexus.Nexus.CharBuffer.next_until	Bio.Nexus.Nexus.CharBuffer-class.html#next_until
Bio.Nexus.Nexus.CharBuffer.__init__	Bio.Nexus.Nexus.CharBuffer-class.html#__init__
Bio.Nexus.Nexus.Commandline	Bio.Nexus.Nexus.Commandline-class.html
Bio.Nexus.Nexus.Commandline.__init__	Bio.Nexus.Nexus.Commandline-class.html#__init__
Bio.Nexus.Nexus.Nexus	Bio.Nexus.Nexus.Nexus-class.html
Bio.Nexus.Nexus.Nexus.write_nexus_data	Bio.Nexus.Nexus.Nexus-class.html#write_nexus_data
Bio.Nexus.Nexus.Nexus._taxlabels	Bio.Nexus.Nexus.Nexus-class.html#_taxlabels
Bio.Nexus.Nexus.Nexus._options	Bio.Nexus.Nexus.Nexus-class.html#_options
Bio.Nexus.Nexus.Nexus._eliminate	Bio.Nexus.Nexus.Nexus-class.html#_eliminate
Bio.Nexus.Nexus.Nexus.constant	Bio.Nexus.Nexus.Nexus-class.html#constant
Bio.Nexus.Nexus.Nexus.terminal_gap_to_missing	Bio.Nexus.Nexus.Nexus-class.html#terminal_gap_to_missing
Bio.Nexus.Nexus.Nexus._codonposset	Bio.Nexus.Nexus.Nexus-class.html#_codonposset
Bio.Nexus.Nexus.Nexus._resolve	Bio.Nexus.Nexus.Nexus-class.html#_resolve
Bio.Nexus.Nexus.Nexus._charset	Bio.Nexus.Nexus.Nexus-class.html#_charset
Bio.Nexus.Nexus.Nexus._statelabels	Bio.Nexus.Nexus.Nexus-class.html#_statelabels
Bio.Nexus.Nexus.Nexus._taxpartition	Bio.Nexus.Nexus.Nexus-class.html#_taxpartition
Bio.Nexus.Nexus.Nexus._utree	Bio.Nexus.Nexus.Nexus-class.html#_utree
Bio.Nexus.Nexus.Nexus.insert_gap	Bio.Nexus.Nexus.Nexus-class.html#insert_gap
Bio.Nexus.Nexus.Nexus._tree	Bio.Nexus.Nexus.Nexus-class.html#_tree
Bio.Nexus.Nexus.Nexus.__init__	Bio.Nexus.Nexus.Nexus-class.html#__init__
Bio.Nexus.Nexus.Nexus._charstatelabels	Bio.Nexus.Nexus.Nexus-class.html#_charstatelabels
Bio.Nexus.Nexus.Nexus._parse_nexus_block	Bio.Nexus.Nexus.Nexus-class.html#_parse_nexus_block
Bio.Nexus.Nexus.Nexus.append_sets	Bio.Nexus.Nexus.Nexus-class.html#append_sets
Bio.Nexus.Nexus.Nexus._treepartition	Bio.Nexus.Nexus.Nexus-class.html#_treepartition
Bio.Nexus.Nexus.Nexus._changeset	Bio.Nexus.Nexus.Nexus-class.html#_changeset
Bio.Nexus.Nexus.Nexus._treeset	Bio.Nexus.Nexus.Nexus-class.html#_treeset
Bio.Nexus.Nexus.Nexus._format	Bio.Nexus.Nexus.Nexus-class.html#_format
Bio.Nexus.Nexus.Nexus.invert	Bio.Nexus.Nexus.Nexus-class.html#invert
Bio.Nexus.Nexus.Nexus.add_sequence	Bio.Nexus.Nexus.Nexus-class.html#add_sequence
Bio.Nexus.Nexus.Nexus._taxset	Bio.Nexus.Nexus.Nexus-class.html#_taxset
Bio.Nexus.Nexus.Nexus.export_fasta	Bio.Nexus.Nexus.Nexus-class.html#export_fasta
Bio.Nexus.Nexus.Nexus.write_nexus_data_partitions	Bio.Nexus.Nexus.Nexus-class.html#write_nexus_data_partitions
Bio.Nexus.Nexus.Nexus.gaponly	Bio.Nexus.Nexus.Nexus-class.html#gaponly
Bio.Nexus.Nexus.Nexus._get_nexus_block	Bio.Nexus.Nexus.Nexus-class.html#_get_nexus_block
Bio.Nexus.Nexus.Nexus._codeset	Bio.Nexus.Nexus.Nexus-class.html#_codeset
Bio.Nexus.Nexus.Nexus._translate	Bio.Nexus.Nexus.Nexus-class.html#_translate
Bio.Nexus.Nexus.Nexus.read	Bio.Nexus.Nexus.Nexus-class.html#read
Bio.Nexus.Nexus.Nexus._matrix	Bio.Nexus.Nexus.Nexus-class.html#_matrix
Bio.Nexus.Nexus.Nexus.cstatus	Bio.Nexus.Nexus.Nexus-class.html#cstatus
Bio.Nexus.Nexus.Nexus._name_n_vector	Bio.Nexus.Nexus.Nexus-class.html#_name_n_vector
Bio.Nexus.Nexus.Nexus._parse_list	Bio.Nexus.Nexus.Nexus-class.html#_parse_list
Bio.Nexus.Nexus.Nexus.export_phylip	Bio.Nexus.Nexus.Nexus-class.html#export_phylip
Bio.Nexus.Nexus.Nexus.original_taxon_order	Bio.Nexus.Nexus.Nexus-class.html#original_taxon_order
Bio.Nexus.Nexus.Nexus._stateset	Bio.Nexus.Nexus.Nexus-class.html#_stateset
Bio.Nexus.Nexus.Nexus.weighted_stepmatrix	Bio.Nexus.Nexus.Nexus-class.html#weighted_stepmatrix
Bio.Nexus.Nexus.Nexus._unknown_nexus_block	Bio.Nexus.Nexus.Nexus-class.html#_unknown_nexus_block
Bio.Nexus.Nexus.Nexus._apply_block_structure	Bio.Nexus.Nexus.Nexus-class.html#_apply_block_structure
Bio.Nexus.Nexus.Nexus._dimensions	Bio.Nexus.Nexus.Nexus-class.html#_dimensions
Bio.Nexus.Nexus.Nexus._adjust_charlabels	Bio.Nexus.Nexus.Nexus-class.html#_adjust_charlabels
Bio.Nexus.Nexus.Nexus.bootstrap	Bio.Nexus.Nexus.Nexus-class.html#bootstrap
Bio.Nexus.Nexus.Nexus._charpartition	Bio.Nexus.Nexus.Nexus-class.html#_charpartition
Bio.Nexus.Nexus.Nexus.get_original_taxon_order	Bio.Nexus.Nexus.Nexus-class.html#get_original_taxon_order
Bio.Nexus.Nexus.Nexus._get_indices	Bio.Nexus.Nexus.Nexus-class.html#_get_indices
Bio.Nexus.Nexus.Nexus._charlabels	Bio.Nexus.Nexus.Nexus-class.html#_charlabels
Bio.Nexus.Nexus.Nexus._check_taxlabels	Bio.Nexus.Nexus.Nexus-class.html#_check_taxlabels
Bio.Nexus.Nexus.Nexus.crop_matrix	Bio.Nexus.Nexus.Nexus-class.html#crop_matrix
Bio.Nexus.Nexus.Nexus._title	Bio.Nexus.Nexus.Nexus-class.html#_title
Bio.Nexus.Nexus.Nexus._set	Bio.Nexus.Nexus.Nexus-class.html#_set
Bio.Nexus.Nexus.Nexus.set_original_taxon_order	Bio.Nexus.Nexus.Nexus-class.html#set_original_taxon_order
Bio.Nexus.Nexus.NexusError	Bio.Nexus.Nexus.NexusError-class.html
Bio.Nexus.Nexus.StepMatrix	Bio.Nexus.Nexus.StepMatrix-class.html
Bio.Nexus.Nexus.StepMatrix.set	Bio.Nexus.Nexus.StepMatrix-class.html#set
Bio.Nexus.Nexus.StepMatrix.sum	Bio.Nexus.Nexus.StepMatrix-class.html#sum
Bio.Nexus.Nexus.StepMatrix.weighting	Bio.Nexus.Nexus.StepMatrix-class.html#weighting
Bio.Nexus.Nexus.StepMatrix.add	Bio.Nexus.Nexus.StepMatrix-class.html#add
Bio.Nexus.Nexus.StepMatrix.__init__	Bio.Nexus.Nexus.StepMatrix-class.html#__init__
Bio.Nexus.Nexus.StepMatrix.transformation	Bio.Nexus.Nexus.StepMatrix-class.html#transformation
Bio.Nexus.Nexus.StepMatrix.smprint	Bio.Nexus.Nexus.StepMatrix-class.html#smprint
Bio.Nexus.Nodes.Chain	Bio.Nexus.Nodes.Chain-class.html
Bio.Nexus.Nodes.Chain.is_parent_of	Bio.Nexus.Nodes.Chain-class.html#is_parent_of
Bio.Nexus.Nodes.Chain.collapse	Bio.Nexus.Nodes.Chain-class.html#collapse
Bio.Nexus.Nodes.Chain.trace	Bio.Nexus.Nodes.Chain-class.html#trace
Bio.Nexus.Nodes.Chain.all_ids	Bio.Nexus.Nodes.Chain-class.html#all_ids
Bio.Nexus.Nodes.Chain.add	Bio.Nexus.Nodes.Chain-class.html#add
Bio.Nexus.Nodes.Chain.kill	Bio.Nexus.Nodes.Chain-class.html#kill
Bio.Nexus.Nodes.Chain._get_id	Bio.Nexus.Nodes.Chain-class.html#_get_id
Bio.Nexus.Nodes.Chain.link	Bio.Nexus.Nodes.Chain-class.html#link
Bio.Nexus.Nodes.Chain.unlink	Bio.Nexus.Nodes.Chain-class.html#unlink
Bio.Nexus.Nodes.Chain.__init__	Bio.Nexus.Nodes.Chain-class.html#__init__
Bio.Nexus.Nodes.ChainException	Bio.Nexus.Nodes.ChainException-class.html
Bio.Nexus.Nodes.Node	Bio.Nexus.Nodes.Node-class.html
Bio.Nexus.Nodes.Node.get_prev	Bio.Nexus.Nodes.Node-class.html#get_prev
Bio.Nexus.Nodes.Node.remove_succ	Bio.Nexus.Nodes.Node-class.html#remove_succ
Bio.Nexus.Nodes.Node.get_data	Bio.Nexus.Nodes.Node-class.html#get_data
Bio.Nexus.Nodes.Node.get_id	Bio.Nexus.Nodes.Node-class.html#get_id
Bio.Nexus.Nodes.Node.get_succ	Bio.Nexus.Nodes.Node-class.html#get_succ
Bio.Nexus.Nodes.Node.set_prev	Bio.Nexus.Nodes.Node-class.html#set_prev
Bio.Nexus.Nodes.Node.set_succ	Bio.Nexus.Nodes.Node-class.html#set_succ
Bio.Nexus.Nodes.Node.add_succ	Bio.Nexus.Nodes.Node-class.html#add_succ
Bio.Nexus.Nodes.Node.set_id	Bio.Nexus.Nodes.Node-class.html#set_id
Bio.Nexus.Nodes.Node.set_data	Bio.Nexus.Nodes.Node-class.html#set_data
Bio.Nexus.Nodes.Node.__init__	Bio.Nexus.Nodes.Node-class.html#__init__
Bio.Nexus.Nodes.NodeException	Bio.Nexus.Nodes.NodeException-class.html
Bio.Nexus.Trees.NodeData	Bio.Nexus.Trees.NodeData-class.html
Bio.Nexus.Trees.NodeData.__init__	Bio.Nexus.Trees.NodeData-class.html#__init__
Bio.Nexus.Trees.Tree	Bio.Nexus.Trees.Tree-class.html
Bio.Nexus.Trees.Tree.is_monophyletic	Bio.Nexus.Trees.Tree-class.html#is_monophyletic
Bio.Nexus.Trees.Tree.merge_with_support	Bio.Nexus.Trees.Tree-class.html#merge_with_support
Bio.Nexus.Trees.Tree.__str__	Bio.Nexus.Trees.Tree-class.html#__str__
Bio.Nexus.Trees.Tree.is_internal	Bio.Nexus.Trees.Tree-class.html#is_internal
Bio.Nexus.Nodes.Chain.all_ids	Bio.Nexus.Nodes.Chain-class.html#all_ids
Bio.Nexus.Trees.Tree.set_subtree	Bio.Nexus.Trees.Tree-class.html#set_subtree
Bio.Nexus.Trees.Tree.convert_absolute_support	Bio.Nexus.Trees.Tree-class.html#convert_absolute_support
Bio.Nexus.Trees.Tree.common_ancestor	Bio.Nexus.Trees.Tree-class.html#common_ancestor
Bio.Nexus.Trees.Tree.randomize	Bio.Nexus.Trees.Tree-class.html#randomize
Bio.Nexus.Trees.Tree.__init__	Bio.Nexus.Trees.Tree-class.html#__init__
Bio.Nexus.Nodes.Chain.unlink	Bio.Nexus.Nodes.Chain-class.html#unlink
Bio.Nexus.Trees.Tree._add_subtree	Bio.Nexus.Trees.Tree-class.html#_add_subtree
Bio.Nexus.Trees.Tree.root_with_outgroup	Bio.Nexus.Trees.Tree-class.html#root_with_outgroup
Bio.Nexus.Nodes.Chain.add	Bio.Nexus.Nodes.Chain-class.html#add
Bio.Nexus.Trees.Tree.split	Bio.Nexus.Trees.Tree-class.html#split
Bio.Nexus.Trees.Tree.is_bifurcating	Bio.Nexus.Trees.Tree-class.html#is_bifurcating
Bio.Nexus.Trees.Tree.node	Bio.Nexus.Trees.Tree-class.html#node
Bio.Nexus.Nodes.Chain.is_parent_of	Bio.Nexus.Nodes.Chain-class.html#is_parent_of
Bio.Nexus.Trees.Tree.count_terminals	Bio.Nexus.Trees.Tree-class.html#count_terminals
Bio.Nexus.Nodes.Chain.collapse	Bio.Nexus.Nodes.Chain-class.html#collapse
Bio.Nexus.Nodes.Chain.trace	Bio.Nexus.Nodes.Chain-class.html#trace
Bio.Nexus.Trees.Tree.is_identical	Bio.Nexus.Trees.Tree-class.html#is_identical
Bio.Nexus.Trees.Tree.get_terminals	Bio.Nexus.Trees.Tree-class.html#get_terminals
Bio.Nexus.Nodes.Chain.link	Bio.Nexus.Nodes.Chain-class.html#link
Bio.Nexus.Trees.Tree.get_taxa	Bio.Nexus.Trees.Tree-class.html#get_taxa
Bio.Nexus.Trees.Tree.sum_branchlength	Bio.Nexus.Trees.Tree-class.html#sum_branchlength
Bio.Nexus.Trees.Tree._get_values	Bio.Nexus.Trees.Tree-class.html#_get_values
Bio.Nexus.Trees.Tree.collapse_genera	Bio.Nexus.Trees.Tree-class.html#collapse_genera
Bio.Nexus.Trees.Tree.is_preterminal	Bio.Nexus.Trees.Tree-class.html#is_preterminal
Bio.Nexus.Trees.Tree.prune	Bio.Nexus.Trees.Tree-class.html#prune
Bio.Nexus.Trees.Tree.is_terminal	Bio.Nexus.Trees.Tree-class.html#is_terminal
Bio.Nexus.Trees.Tree.distance	Bio.Nexus.Trees.Tree-class.html#distance
Bio.Nexus.Trees.Tree.has_support	Bio.Nexus.Trees.Tree-class.html#has_support
Bio.Nexus.Trees.Tree.search_taxon	Bio.Nexus.Trees.Tree-class.html#search_taxon
Bio.Nexus.Trees.Tree._add_nodedata	Bio.Nexus.Trees.Tree-class.html#_add_nodedata
Bio.Nexus.Trees.Tree.branchlength2support	Bio.Nexus.Trees.Tree-class.html#branchlength2support
Bio.Nexus.Trees.Tree.is_compatible	Bio.Nexus.Trees.Tree-class.html#is_compatible
Bio.Nexus.Trees.Tree._walk	Bio.Nexus.Trees.Tree-class.html#_walk
Bio.Nexus.Trees.Tree.to_string	Bio.Nexus.Trees.Tree-class.html#to_string
Bio.Nexus.Trees.Tree.unroot	Bio.Nexus.Trees.Tree-class.html#unroot
Bio.Nexus.Nodes.Chain._get_id	Bio.Nexus.Nodes.Chain-class.html#_get_id
Bio.Nexus.Nodes.Chain.kill	Bio.Nexus.Nodes.Chain-class.html#kill
Bio.Nexus.Trees.Tree._parse	Bio.Nexus.Trees.Tree-class.html#_parse
Bio.Nexus.Trees.Tree.display	Bio.Nexus.Trees.Tree-class.html#display
Bio.Nexus.Trees.TreeError	Bio.Nexus.Trees.TreeError-class.html
Bio.PDB.AbstractPropertyMap.AbstractAtomPropertyMap	Bio.PDB.AbstractPropertyMap.AbstractAtomPropertyMap-class.html
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__getitem__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__getitem__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__iter__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__iter__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#has_key
Bio.PDB.AbstractPropertyMap.AbstractAtomPropertyMap._translate_id	Bio.PDB.AbstractPropertyMap.AbstractAtomPropertyMap-class.html#_translate_id
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__len__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__len__
Bio.PDB.AbstractPropertyMap.AbstractAtomPropertyMap.__init__	Bio.PDB.AbstractPropertyMap.AbstractAtomPropertyMap-class.html#__init__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__getitem__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__getitem__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__iter__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__iter__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#has_key
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap._translate_id	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#_translate_id
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__len__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__len__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__init__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__init__
Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap	Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap-class.html
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__getitem__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__getitem__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__iter__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__iter__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#has_key
Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap._translate_id	Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap-class.html#_translate_id
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__len__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__len__
Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap.__init__	Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap-class.html#__init__
Bio.PDB.Atom.Atom	Bio.PDB.Atom.Atom-class.html
Bio.PDB.Atom.Atom.get_serial_number	Bio.PDB.Atom.Atom-class.html#get_serial_number
Bio.PDB.Atom.Atom.set_bfactor	Bio.PDB.Atom.Atom-class.html#set_bfactor
Bio.PDB.Atom.Atom.get_vector	Bio.PDB.Atom.Atom-class.html#get_vector
Bio.PDB.Atom.Atom.set_serial_number	Bio.PDB.Atom.Atom-class.html#set_serial_number
Bio.PDB.Atom.Atom.__init__	Bio.PDB.Atom.Atom-class.html#__init__
Bio.PDB.Atom.Atom.get_altloc	Bio.PDB.Atom.Atom-class.html#get_altloc
Bio.PDB.Atom.Atom.get_occupancy	Bio.PDB.Atom.Atom-class.html#get_occupancy
Bio.PDB.Atom.Atom.set_occupancy	Bio.PDB.Atom.Atom-class.html#set_occupancy
Bio.PDB.Atom.Atom.transform	Bio.PDB.Atom.Atom-class.html#transform
Bio.PDB.Atom.Atom.get_coord	Bio.PDB.Atom.Atom-class.html#get_coord
Bio.PDB.Atom.Atom.detach_parent	Bio.PDB.Atom.Atom-class.html#detach_parent
Bio.PDB.Atom.Atom.set_parent	Bio.PDB.Atom.Atom-class.html#set_parent
Bio.PDB.Atom.Atom.__repr__	Bio.PDB.Atom.Atom-class.html#__repr__
Bio.PDB.Atom.Atom.get_level	Bio.PDB.Atom.Atom-class.html#get_level
Bio.PDB.Atom.Atom.get_full_id	Bio.PDB.Atom.Atom-class.html#get_full_id
Bio.PDB.Atom.Atom.flag_disorder	Bio.PDB.Atom.Atom-class.html#flag_disorder
Bio.PDB.Atom.Atom.set_anisou	Bio.PDB.Atom.Atom-class.html#set_anisou
Bio.PDB.Atom.Atom.get_parent	Bio.PDB.Atom.Atom-class.html#get_parent
Bio.PDB.Atom.Atom.is_disordered	Bio.PDB.Atom.Atom-class.html#is_disordered
Bio.PDB.Atom.Atom.get_id	Bio.PDB.Atom.Atom-class.html#get_id
Bio.PDB.Atom.Atom.set_sigatm	Bio.PDB.Atom.Atom-class.html#set_sigatm
Bio.PDB.Atom.Atom.get_sigatm	Bio.PDB.Atom.Atom-class.html#get_sigatm
Bio.PDB.Atom.Atom.set_altloc	Bio.PDB.Atom.Atom-class.html#set_altloc
Bio.PDB.Atom.Atom.get_anisou	Bio.PDB.Atom.Atom-class.html#get_anisou
Bio.PDB.Atom.Atom.set_coord	Bio.PDB.Atom.Atom-class.html#set_coord
Bio.PDB.Atom.Atom.get_name	Bio.PDB.Atom.Atom-class.html#get_name
Bio.PDB.Atom.Atom.get_siguij	Bio.PDB.Atom.Atom-class.html#get_siguij
Bio.PDB.Atom.Atom.get_bfactor	Bio.PDB.Atom.Atom-class.html#get_bfactor
Bio.PDB.Atom.Atom.__sub__	Bio.PDB.Atom.Atom-class.html#__sub__
Bio.PDB.Atom.Atom.set_siguij	Bio.PDB.Atom.Atom-class.html#set_siguij
Bio.PDB.Atom.Atom.get_fullname	Bio.PDB.Atom.Atom-class.html#get_fullname
Bio.PDB.Atom.DisorderedAtom	Bio.PDB.Atom.DisorderedAtom-class.html
Bio.PDB.Atom.DisorderedAtom.disordered_add	Bio.PDB.Atom.DisorderedAtom-class.html#disordered_add
Bio.PDB.Entity.DisorderedEntityWrapper.disordered_select	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#disordered_select
Bio.PDB.Entity.DisorderedEntityWrapper.get_id	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#get_id
Bio.PDB.Entity.DisorderedEntityWrapper.is_disordered	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#is_disordered
Bio.PDB.Entity.DisorderedEntityWrapper.__getattr__	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#__getattr__
Bio.PDB.Entity.DisorderedEntityWrapper.__setitem__	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#__setitem__
Bio.PDB.Entity.DisorderedEntityWrapper.disordered_has_id	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#disordered_has_id
Bio.PDB.Atom.DisorderedAtom.__repr__	Bio.PDB.Atom.DisorderedAtom-class.html#__repr__
Bio.PDB.Entity.DisorderedEntityWrapper.disordered_get_list	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#disordered_get_list
Bio.PDB.Entity.DisorderedEntityWrapper.get_parent	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#get_parent
Bio.PDB.Entity.DisorderedEntityWrapper.disordered_get	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#disordered_get
Bio.PDB.Entity.DisorderedEntityWrapper.disordered_get_id_list	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#disordered_get_id_list
Bio.PDB.Entity.DisorderedEntityWrapper.set_parent	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#set_parent
Bio.PDB.Atom.DisorderedAtom.__init__	Bio.PDB.Atom.DisorderedAtom-class.html#__init__
Bio.PDB.Entity.DisorderedEntityWrapper.detach_parent	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#detach_parent
Bio.PDB.Chain.Chain	Bio.PDB.Chain.Chain-class.html
Bio.PDB.Chain.Chain.__delitem__	Bio.PDB.Chain.Chain-class.html#__delitem__
Bio.PDB.Entity.Entity.get_level	Bio.PDB.Entity.Entity-class.html#get_level
Bio.PDB.Entity.Entity.get_full_id	Bio.PDB.Entity.Entity-class.html#get_full_id
Bio.PDB.Entity.Entity.get_iterator	Bio.PDB.Entity.Entity-class.html#get_iterator
Bio.PDB.Chain.Chain.__getitem__	Bio.PDB.Chain.Chain-class.html#__getitem__
Bio.PDB.Chain.Chain.has_id	Bio.PDB.Chain.Chain-class.html#has_id
Bio.PDB.Entity.Entity.get_parent	Bio.PDB.Entity.Entity-class.html#get_parent
Bio.PDB.Entity.Entity.__len__	Bio.PDB.Entity.Entity-class.html#__len__
Bio.PDB.Entity.Entity.get_id	Bio.PDB.Entity.Entity-class.html#get_id
Bio.PDB.Chain.Chain.get_atoms	Bio.PDB.Chain.Chain-class.html#get_atoms
Bio.PDB.Entity.Entity.get_list	Bio.PDB.Entity.Entity-class.html#get_list
Bio.PDB.Chain.Chain.get_unpacked_list	Bio.PDB.Chain.Chain-class.html#get_unpacked_list
Bio.PDB.Entity.Entity.__iter__	Bio.PDB.Entity.Entity-class.html#__iter__
Bio.PDB.Entity.Entity.add	Bio.PDB.Entity.Entity-class.html#add
Bio.PDB.Chain.Chain._translate_id	Bio.PDB.Chain.Chain-class.html#_translate_id
Bio.PDB.Chain.Chain.__repr__	Bio.PDB.Chain.Chain-class.html#__repr__
Bio.PDB.Entity.Entity.detach_child	Bio.PDB.Entity.Entity-class.html#detach_child
Bio.PDB.Chain.Chain._sort	Bio.PDB.Chain.Chain-class.html#_sort
Bio.PDB.Entity.Entity.set_parent	Bio.PDB.Entity.Entity-class.html#set_parent
Bio.PDB.Chain.Chain.__init__	Bio.PDB.Chain.Chain-class.html#__init__
Bio.PDB.Entity.Entity.detach_parent	Bio.PDB.Entity.Entity-class.html#detach_parent
Bio.PDB.DSSP'.DSSP	Bio.PDB.DSSP%27.DSSP-class.html
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__getitem__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__getitem__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__iter__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__iter__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#has_key
Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap._translate_id	Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap-class.html#_translate_id
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__len__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__len__
Bio.PDB.DSSP'.DSSP.__init__	Bio.PDB.DSSP%27.DSSP-class.html#__init__
Bio.PDB.Dice.ChainSelector	Bio.PDB.Dice.ChainSelector-class.html
Bio.PDB.Dice.ChainSelector.accept_residue	Bio.PDB.Dice.ChainSelector-class.html#accept_residue
Bio.PDB.Dice.ChainSelector.accept_model	Bio.PDB.Dice.ChainSelector-class.html#accept_model
Bio.PDB.Dice.ChainSelector.accept_atom	Bio.PDB.Dice.ChainSelector-class.html#accept_atom
Bio.PDB.Dice.ChainSelector.accept_chain	Bio.PDB.Dice.ChainSelector-class.html#accept_chain
Bio.PDB.Dice.ChainSelector.__init__	Bio.PDB.Dice.ChainSelector-class.html#__init__
Bio.PDB.Entity.DisorderedEntityWrapper	Bio.PDB.Entity.DisorderedEntityWrapper-class.html
Bio.PDB.Entity.DisorderedEntityWrapper.get_parent	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#get_parent
Bio.PDB.Entity.DisorderedEntityWrapper.disordered_select	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#disordered_select
Bio.PDB.Entity.DisorderedEntityWrapper.__setitem__	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#__setitem__
Bio.PDB.Entity.DisorderedEntityWrapper.__getattr__	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#__getattr__
Bio.PDB.Entity.DisorderedEntityWrapper.is_disordered	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#is_disordered
Bio.PDB.Entity.DisorderedEntityWrapper.get_id	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#get_id
Bio.PDB.Entity.DisorderedEntityWrapper.disordered_has_id	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#disordered_has_id
Bio.PDB.Entity.DisorderedEntityWrapper.detach_parent	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#detach_parent
Bio.PDB.Entity.DisorderedEntityWrapper.disordered_get_list	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#disordered_get_list
Bio.PDB.Entity.DisorderedEntityWrapper.disordered_add	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#disordered_add
Bio.PDB.Entity.DisorderedEntityWrapper.disordered_get	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#disordered_get
Bio.PDB.Entity.DisorderedEntityWrapper.disordered_get_id_list	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#disordered_get_id_list
Bio.PDB.Entity.DisorderedEntityWrapper.set_parent	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#set_parent
Bio.PDB.Entity.DisorderedEntityWrapper.__init__	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#__init__
Bio.PDB.Entity.Entity	Bio.PDB.Entity.Entity-class.html
Bio.PDB.Entity.Entity.get_level	Bio.PDB.Entity.Entity-class.html#get_level
Bio.PDB.Entity.Entity.get_full_id	Bio.PDB.Entity.Entity-class.html#get_full_id
Bio.PDB.Entity.Entity.has_id	Bio.PDB.Entity.Entity-class.html#has_id
Bio.PDB.Entity.Entity.__getitem__	Bio.PDB.Entity.Entity-class.html#__getitem__
Bio.PDB.Entity.Entity.get_parent	Bio.PDB.Entity.Entity-class.html#get_parent
Bio.PDB.Entity.Entity.__iter__	Bio.PDB.Entity.Entity-class.html#__iter__
Bio.PDB.Entity.Entity.set_parent	Bio.PDB.Entity.Entity-class.html#set_parent
Bio.PDB.Entity.Entity.get_id	Bio.PDB.Entity.Entity-class.html#get_id
Bio.PDB.Entity.Entity.add	Bio.PDB.Entity.Entity-class.html#add
Bio.PDB.Entity.Entity.__len__	Bio.PDB.Entity.Entity-class.html#__len__
Bio.PDB.Entity.Entity.detach_child	Bio.PDB.Entity.Entity-class.html#detach_child
Bio.PDB.Entity.Entity.get_list	Bio.PDB.Entity.Entity-class.html#get_list
Bio.PDB.Entity.Entity.get_iterator	Bio.PDB.Entity.Entity-class.html#get_iterator
Bio.PDB.Entity.Entity.__init__	Bio.PDB.Entity.Entity-class.html#__init__
Bio.PDB.Entity.Entity.detach_parent	Bio.PDB.Entity.Entity-class.html#detach_parent
Bio.PDB.FragmentMapper'.Fragment	Bio.PDB.FragmentMapper%27.Fragment-class.html
Bio.PDB.FragmentMapper'.Fragment.get_coords	Bio.PDB.FragmentMapper%27.Fragment-class.html#get_coords
Bio.PDB.FragmentMapper'.Fragment.add_residue	Bio.PDB.FragmentMapper%27.Fragment-class.html#add_residue
Bio.PDB.FragmentMapper'.Fragment.get_id	Bio.PDB.FragmentMapper%27.Fragment-class.html#get_id
Bio.PDB.FragmentMapper'.Fragment.__init__	Bio.PDB.FragmentMapper%27.Fragment-class.html#__init__
Bio.PDB.FragmentMapper'.Fragment.get_resname_list	Bio.PDB.FragmentMapper%27.Fragment-class.html#get_resname_list
Bio.PDB.FragmentMapper'.Fragment.__sub__	Bio.PDB.FragmentMapper%27.Fragment-class.html#__sub__
Bio.PDB.FragmentMapper'.Fragment.__len__	Bio.PDB.FragmentMapper%27.Fragment-class.html#__len__
Bio.PDB.FragmentMapper'.Fragment.__repr__	Bio.PDB.FragmentMapper%27.Fragment-class.html#__repr__
Bio.PDB.FragmentMapper'.FragmentMapper	Bio.PDB.FragmentMapper%27.FragmentMapper-class.html
Bio.PDB.FragmentMapper'.FragmentMapper.has_key	Bio.PDB.FragmentMapper%27.FragmentMapper-class.html#has_key
Bio.PDB.FragmentMapper'.FragmentMapper.__init__	Bio.PDB.FragmentMapper%27.FragmentMapper-class.html#__init__
Bio.PDB.FragmentMapper'.FragmentMapper.__getitem__	Bio.PDB.FragmentMapper%27.FragmentMapper-class.html#__getitem__
Bio.PDB.FragmentMapper'.FragmentMapper._map	Bio.PDB.FragmentMapper%27.FragmentMapper-class.html#_map
Bio.PDB.HSExposure.ExposureCN	Bio.PDB.HSExposure.ExposureCN-class.html
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__getitem__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__getitem__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__iter__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__iter__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#has_key
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap._translate_id	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#_translate_id
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__len__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__len__
Bio.PDB.HSExposure.ExposureCN.__init__	Bio.PDB.HSExposure.ExposureCN-class.html#__init__
Bio.PDB.HSExposure.HSExposureCA	Bio.PDB.HSExposure.HSExposureCA-class.html
Bio.PDB.HSExposure._AbstractHSExposure._get_gly_cb_vector	Bio.PDB.HSExposure._AbstractHSExposure-class.html#_get_gly_cb_vector
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__getitem__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__getitem__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#keys
Bio.PDB.HSExposure.HSExposureCA._get_cb	Bio.PDB.HSExposure.HSExposureCA-class.html#_get_cb
Bio.PDB.HSExposure.HSExposureCA.pcb_vectors_pymol	Bio.PDB.HSExposure.HSExposureCA-class.html#pcb_vectors_pymol
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__iter__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__iter__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#has_key
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap._translate_id	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#_translate_id
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__len__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__len__
Bio.PDB.HSExposure.HSExposureCA.__init__	Bio.PDB.HSExposure.HSExposureCA-class.html#__init__
Bio.PDB.HSExposure.HSExposureCB	Bio.PDB.HSExposure.HSExposureCB-class.html
Bio.PDB.HSExposure._AbstractHSExposure._get_gly_cb_vector	Bio.PDB.HSExposure._AbstractHSExposure-class.html#_get_gly_cb_vector
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__getitem__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__getitem__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#keys
Bio.PDB.HSExposure.HSExposureCB._get_cb	Bio.PDB.HSExposure.HSExposureCB-class.html#_get_cb
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__iter__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__iter__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#has_key
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap._translate_id	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#_translate_id
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__len__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__len__
Bio.PDB.HSExposure.HSExposureCB.__init__	Bio.PDB.HSExposure.HSExposureCB-class.html#__init__
Bio.PDB.HSExposure._AbstractHSExposure	Bio.PDB.HSExposure._AbstractHSExposure-class.html
Bio.PDB.HSExposure._AbstractHSExposure._get_gly_cb_vector	Bio.PDB.HSExposure._AbstractHSExposure-class.html#_get_gly_cb_vector
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__getitem__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__getitem__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__iter__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__iter__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#has_key
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap._translate_id	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#_translate_id
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__len__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__len__
Bio.PDB.HSExposure._AbstractHSExposure.__init__	Bio.PDB.HSExposure._AbstractHSExposure-class.html#__init__
Bio.PDB.MMCIF2Dict.MMCIF2Dict	Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html
Bio.PDB.MMCIF2Dict.MMCIF2Dict.SIMPLE	Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html#SIMPLE
Bio.PDB.MMCIF2Dict.MMCIF2Dict.SEMICOLONS	Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html#SEMICOLONS
Bio.PDB.MMCIF2Dict.MMCIF2Dict.DATA	Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html#DATA
Bio.PDB.MMCIF2Dict.MMCIF2Dict.__init__	Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html#__init__
Bio.PDB.MMCIF2Dict.MMCIF2Dict.__getitem__	Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html#__getitem__
Bio.PDB.MMCIF2Dict.MMCIF2Dict._make_mmcif_dict	Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html#_make_mmcif_dict
Bio.PDB.MMCIF2Dict.MMCIF2Dict.QUOTED	Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html#QUOTED
Bio.PDB.MMCIF2Dict.MMCIF2Dict.NAME	Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html#NAME
Bio.PDB.MMCIF2Dict.MMCIF2Dict.DOUBLEQUOTED	Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html#DOUBLEQUOTED
Bio.PDB.MMCIF2Dict.MMCIF2Dict.LOOP	Bio.PDB.MMCIF2Dict.MMCIF2Dict-class.html#LOOP
Bio.PDB.MMCIFParser.MMCIFParser	Bio.PDB.MMCIFParser.MMCIFParser-class.html
Bio.PDB.MMCIFParser.MMCIFParser.get_structure	Bio.PDB.MMCIFParser.MMCIFParser-class.html#get_structure
Bio.PDB.MMCIFParser.MMCIFParser._get_icode	Bio.PDB.MMCIFParser.MMCIFParser-class.html#_get_icode
Bio.PDB.MMCIFParser.MMCIFParser._build_structure	Bio.PDB.MMCIFParser.MMCIFParser-class.html#_build_structure
Bio.PDB.Model.Model	Bio.PDB.Model.Model-class.html
Bio.PDB.Entity.Entity.get_level	Bio.PDB.Entity.Entity-class.html#get_level
Bio.PDB.Entity.Entity.get_full_id	Bio.PDB.Entity.Entity-class.html#get_full_id
Bio.PDB.Entity.Entity.has_id	Bio.PDB.Entity.Entity-class.html#has_id
Bio.PDB.Model.Model._sort	Bio.PDB.Model.Model-class.html#_sort
Bio.PDB.Model.Model.get_residues	Bio.PDB.Model.Model-class.html#get_residues
Bio.PDB.Entity.Entity.__getitem__	Bio.PDB.Entity.Entity-class.html#__getitem__
Bio.PDB.Entity.Entity.get_id	Bio.PDB.Entity.Entity-class.html#get_id
Bio.PDB.Model.Model.get_atoms	Bio.PDB.Model.Model-class.html#get_atoms
Bio.PDB.Entity.Entity.get_list	Bio.PDB.Entity.Entity-class.html#get_list
Bio.PDB.Entity.Entity.__len__	Bio.PDB.Entity.Entity-class.html#__len__
Bio.PDB.Entity.Entity.__iter__	Bio.PDB.Entity.Entity-class.html#__iter__
Bio.PDB.Entity.Entity.add	Bio.PDB.Entity.Entity-class.html#add
Bio.PDB.Model.Model.__repr__	Bio.PDB.Model.Model-class.html#__repr__
Bio.PDB.Entity.Entity.detach_child	Bio.PDB.Entity.Entity-class.html#detach_child
Bio.PDB.Entity.Entity.get_parent	Bio.PDB.Entity.Entity-class.html#get_parent
Bio.PDB.Entity.Entity.get_iterator	Bio.PDB.Entity.Entity-class.html#get_iterator
Bio.PDB.Entity.Entity.set_parent	Bio.PDB.Entity.Entity-class.html#set_parent
Bio.PDB.Model.Model.__init__	Bio.PDB.Model.Model-class.html#__init__
Bio.PDB.Entity.Entity.detach_parent	Bio.PDB.Entity.Entity-class.html#detach_parent
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Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__getitem__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__getitem__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__iter__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__iter__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#has_key
Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap._translate_id	Bio.PDB.AbstractPropertyMap.AbstractResiduePropertyMap-class.html#_translate_id
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__len__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__len__
Bio.PDB.NACCESS.NACCESS.__init__	Bio.PDB.NACCESS.NACCESS-class.html#__init__
Bio.PDB.NACCESS.NACCESS_atomic	Bio.PDB.NACCESS.NACCESS_atomic-class.html
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__getitem__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__getitem__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__iter__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__iter__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#has_key
Bio.PDB.AbstractPropertyMap.AbstractAtomPropertyMap._translate_id	Bio.PDB.AbstractPropertyMap.AbstractAtomPropertyMap-class.html#_translate_id
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__len__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__len__
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Bio.PDB.NeighborSearch.NeighborSearch	Bio.PDB.NeighborSearch.NeighborSearch-class.html
Bio.PDB.NeighborSearch.NeighborSearch.search_all	Bio.PDB.NeighborSearch.NeighborSearch-class.html#search_all
Bio.PDB.NeighborSearch.NeighborSearch._get_unique_parent_pairs	Bio.PDB.NeighborSearch.NeighborSearch-class.html#_get_unique_parent_pairs
Bio.PDB.NeighborSearch.NeighborSearch.search	Bio.PDB.NeighborSearch.NeighborSearch-class.html#search
Bio.PDB.NeighborSearch.NeighborSearch.__init__	Bio.PDB.NeighborSearch.NeighborSearch-class.html#__init__
Bio.PDB.PDBExceptions.PDBConstructionException	Bio.PDB.PDBExceptions.PDBConstructionException-class.html
Bio.PDB.PDBExceptions.PDBConstructionWarning	Bio.PDB.PDBExceptions.PDBConstructionWarning-class.html
Bio.PDB.PDBExceptions.PDBException	Bio.PDB.PDBExceptions.PDBException-class.html
Bio.PDB.PDBIO'.PDBIO	Bio.PDB.PDBIO%27.PDBIO-class.html
Bio.PDB.PDBIO'.PDBIO.save	Bio.PDB.PDBIO%27.PDBIO-class.html#save
Bio.PDB.PDBIO'.PDBIO.__init__	Bio.PDB.PDBIO%27.PDBIO-class.html#__init__
Bio.PDB.PDBIO'.PDBIO._get_atom_line	Bio.PDB.PDBIO%27.PDBIO-class.html#_get_atom_line
Bio.PDB.PDBIO'.PDBIO.set_structure	Bio.PDB.PDBIO%27.PDBIO-class.html#set_structure
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Bio.PDB.PDBIO'.Select.accept_residue	Bio.PDB.PDBIO%27.Select-class.html#accept_residue
Bio.PDB.PDBIO'.Select.accept_model	Bio.PDB.PDBIO%27.Select-class.html#accept_model
Bio.PDB.PDBIO'.Select.accept_atom	Bio.PDB.PDBIO%27.Select-class.html#accept_atom
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Bio.PDB.PDBIO'.Select.accept_chain	Bio.PDB.PDBIO%27.Select-class.html#accept_chain
Bio.PDB.PDBList'.PDBList	Bio.PDB.PDBList%27.PDBList-class.html
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Bio.PDB.PDBList'.PDBList.update_pdb	Bio.PDB.PDBList%27.PDBList-class.html#update_pdb
Bio.PDB.PDBList'.PDBList.get_all_entries	Bio.PDB.PDBList%27.PDBList-class.html#get_all_entries
Bio.PDB.PDBList'.PDBList.retrieve_pdb_file	Bio.PDB.PDBList%27.PDBList-class.html#retrieve_pdb_file
Bio.PDB.PDBList'.PDBList.get_seqres_file	Bio.PDB.PDBList%27.PDBList-class.html#get_seqres_file
Bio.PDB.PDBList'.PDBList.download_obsolete_entries	Bio.PDB.PDBList%27.PDBList-class.html#download_obsolete_entries
Bio.PDB.PDBList'.PDBList.get_status_list	Bio.PDB.PDBList%27.PDBList-class.html#get_status_list
Bio.PDB.PDBList'.PDBList.download_entire_pdb	Bio.PDB.PDBList%27.PDBList-class.html#download_entire_pdb
Bio.PDB.PDBList'.PDBList.alternative_download_url	Bio.PDB.PDBList%27.PDBList-class.html#alternative_download_url
Bio.PDB.PDBList'.PDBList.PDB_REF	Bio.PDB.PDBList%27.PDBList-class.html#PDB_REF
Bio.PDB.PDBList'.PDBList.get_all_obsolete	Bio.PDB.PDBList%27.PDBList-class.html#get_all_obsolete
Bio.PDB.PDBList'.PDBList.__init__	Bio.PDB.PDBList%27.PDBList-class.html#__init__
Bio.PDB.PDBParser'.PDBParser	Bio.PDB.PDBParser%27.PDBParser-class.html
Bio.PDB.PDBParser'.PDBParser.get_structure	Bio.PDB.PDBParser%27.PDBParser-class.html#get_structure
Bio.PDB.PDBParser'.PDBParser.__init__	Bio.PDB.PDBParser%27.PDBParser-class.html#__init__
Bio.PDB.PDBParser'.PDBParser._parse_coordinates	Bio.PDB.PDBParser%27.PDBParser-class.html#_parse_coordinates
Bio.PDB.PDBParser'.PDBParser.get_trailer	Bio.PDB.PDBParser%27.PDBParser-class.html#get_trailer
Bio.PDB.PDBParser'.PDBParser._handle_PDB_exception	Bio.PDB.PDBParser%27.PDBParser-class.html#_handle_PDB_exception
Bio.PDB.PDBParser'.PDBParser._parse	Bio.PDB.PDBParser%27.PDBParser-class.html#_parse
Bio.PDB.PDBParser'.PDBParser._get_header	Bio.PDB.PDBParser%27.PDBParser-class.html#_get_header
Bio.PDB.PDBParser'.PDBParser.get_header	Bio.PDB.PDBParser%27.PDBParser-class.html#get_header
Bio.PDB.PSEA.PSEA	Bio.PDB.PSEA.PSEA-class.html
Bio.PDB.PSEA.PSEA.__init__	Bio.PDB.PSEA.PSEA-class.html#__init__
Bio.PDB.PSEA.PSEA.get_seq	Bio.PDB.PSEA.PSEA-class.html#get_seq
Bio.PDB.Polypeptide.CaPPBuilder	Bio.PDB.Polypeptide.CaPPBuilder-class.html
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Bio.PDB.Polypeptide._PPBuilder.build_peptides	Bio.PDB.Polypeptide._PPBuilder-class.html#build_peptides
Bio.PDB.Polypeptide._PPBuilder._accept	Bio.PDB.Polypeptide._PPBuilder-class.html#_accept
Bio.PDB.Polypeptide.CaPPBuilder.__init__	Bio.PDB.Polypeptide.CaPPBuilder-class.html#__init__
Bio.PDB.Polypeptide.PPBuilder	Bio.PDB.Polypeptide.PPBuilder-class.html
Bio.PDB.Polypeptide._PPBuilder._accept	Bio.PDB.Polypeptide._PPBuilder-class.html#_accept
Bio.PDB.Polypeptide.PPBuilder._is_connected	Bio.PDB.Polypeptide.PPBuilder-class.html#_is_connected
Bio.PDB.Polypeptide._PPBuilder.build_peptides	Bio.PDB.Polypeptide._PPBuilder-class.html#build_peptides
Bio.PDB.Polypeptide.PPBuilder._test_dist	Bio.PDB.Polypeptide.PPBuilder-class.html#_test_dist
Bio.PDB.Polypeptide.PPBuilder.__init__	Bio.PDB.Polypeptide.PPBuilder-class.html#__init__
Bio.PDB.Polypeptide.Polypeptide	Bio.PDB.Polypeptide.Polypeptide-class.html
Bio.PDB.Polypeptide.Polypeptide.get_theta_list	Bio.PDB.Polypeptide.Polypeptide-class.html#get_theta_list
Bio.PDB.Polypeptide.Polypeptide.get_phi_psi_list	Bio.PDB.Polypeptide.Polypeptide-class.html#get_phi_psi_list
Bio.PDB.Polypeptide.Polypeptide.get_sequence	Bio.PDB.Polypeptide.Polypeptide-class.html#get_sequence
Bio.PDB.Polypeptide.Polypeptide.get_ca_list	Bio.PDB.Polypeptide.Polypeptide-class.html#get_ca_list
Bio.PDB.Polypeptide.Polypeptide.get_tau_list	Bio.PDB.Polypeptide.Polypeptide-class.html#get_tau_list
Bio.PDB.Polypeptide.Polypeptide.__repr__	Bio.PDB.Polypeptide.Polypeptide-class.html#__repr__
Bio.PDB.Polypeptide._PPBuilder	Bio.PDB.Polypeptide._PPBuilder-class.html
Bio.PDB.Polypeptide._PPBuilder.build_peptides	Bio.PDB.Polypeptide._PPBuilder-class.html#build_peptides
Bio.PDB.Polypeptide._PPBuilder._accept	Bio.PDB.Polypeptide._PPBuilder-class.html#_accept
Bio.PDB.Polypeptide._PPBuilder.__init__	Bio.PDB.Polypeptide._PPBuilder-class.html#__init__
Bio.PDB.Residue.DisorderedResidue	Bio.PDB.Residue.DisorderedResidue-class.html
Bio.PDB.Residue.DisorderedResidue.sort	Bio.PDB.Residue.DisorderedResidue-class.html#sort
Bio.PDB.Residue.DisorderedResidue.disordered_add	Bio.PDB.Residue.DisorderedResidue-class.html#disordered_add
Bio.PDB.Entity.DisorderedEntityWrapper.disordered_select	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#disordered_select
Bio.PDB.Entity.DisorderedEntityWrapper.get_id	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#get_id
Bio.PDB.Entity.DisorderedEntityWrapper.__setitem__	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#__setitem__
Bio.PDB.Entity.DisorderedEntityWrapper.__getattr__	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#__getattr__
Bio.PDB.Entity.DisorderedEntityWrapper.is_disordered	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#is_disordered
Bio.PDB.Residue.DisorderedResidue.add	Bio.PDB.Residue.DisorderedResidue-class.html#add
Bio.PDB.Entity.DisorderedEntityWrapper.disordered_has_id	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#disordered_has_id
Bio.PDB.Residue.DisorderedResidue.__repr__	Bio.PDB.Residue.DisorderedResidue-class.html#__repr__
Bio.PDB.Entity.DisorderedEntityWrapper.disordered_get_list	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#disordered_get_list
Bio.PDB.Entity.DisorderedEntityWrapper.get_parent	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#get_parent
Bio.PDB.Entity.DisorderedEntityWrapper.disordered_get	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#disordered_get
Bio.PDB.Entity.DisorderedEntityWrapper.disordered_get_id_list	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#disordered_get_id_list
Bio.PDB.Entity.DisorderedEntityWrapper.set_parent	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#set_parent
Bio.PDB.Residue.DisorderedResidue.__init__	Bio.PDB.Residue.DisorderedResidue-class.html#__init__
Bio.PDB.Entity.DisorderedEntityWrapper.detach_parent	Bio.PDB.Entity.DisorderedEntityWrapper-class.html#detach_parent
Bio.PDB.Residue.Residue	Bio.PDB.Residue.Residue-class.html
Bio.PDB.Residue.Residue.get_resname	Bio.PDB.Residue.Residue-class.html#get_resname
Bio.PDB.Entity.Entity.has_id	Bio.PDB.Entity.Entity-class.html#has_id
Bio.PDB.Residue.Residue.flag_disordered	Bio.PDB.Residue.Residue-class.html#flag_disordered
Bio.PDB.Residue.Residue.__init__	Bio.PDB.Residue.Residue-class.html#__init__
Bio.PDB.Entity.Entity.get_list	Bio.PDB.Entity.Entity-class.html#get_list
Bio.PDB.Residue.Residue.add	Bio.PDB.Residue.Residue-class.html#add
Bio.PDB.Entity.Entity.detach_parent	Bio.PDB.Entity.Entity-class.html#detach_parent
Bio.PDB.Entity.Entity.set_parent	Bio.PDB.Entity.Entity-class.html#set_parent
Bio.PDB.Entity.Entity.__len__	Bio.PDB.Entity.Entity-class.html#__len__
Bio.PDB.Residue.Residue.sort	Bio.PDB.Residue.Residue-class.html#sort
Bio.PDB.Entity.Entity.get_level	Bio.PDB.Entity.Entity-class.html#get_level
Bio.PDB.Entity.Entity.get_full_id	Bio.PDB.Entity.Entity-class.html#get_full_id
Bio.PDB.Entity.Entity.__getitem__	Bio.PDB.Entity.Entity-class.html#__getitem__
Bio.PDB.Entity.Entity.get_parent	Bio.PDB.Entity.Entity-class.html#get_parent
Bio.PDB.Residue.Residue.is_disordered	Bio.PDB.Residue.Residue-class.html#is_disordered
Bio.PDB.Entity.Entity.get_id	Bio.PDB.Entity.Entity-class.html#get_id
Bio.PDB.Entity.Entity.get_iterator	Bio.PDB.Entity.Entity-class.html#get_iterator
Bio.PDB.Residue.Residue._sort	Bio.PDB.Residue.Residue-class.html#_sort
Bio.PDB.Residue.Residue.get_segid	Bio.PDB.Residue.Residue-class.html#get_segid
Bio.PDB.Entity.Entity.__iter__	Bio.PDB.Entity.Entity-class.html#__iter__
Bio.PDB.Residue.Residue.get_unpacked_list	Bio.PDB.Residue.Residue-class.html#get_unpacked_list
Bio.PDB.Residue.Residue.__repr__	Bio.PDB.Residue.Residue-class.html#__repr__
Bio.PDB.Entity.Entity.detach_child	Bio.PDB.Entity.Entity-class.html#detach_child
Bio.PDB.ResidueDepth'.ResidueDepth	Bio.PDB.ResidueDepth%27.ResidueDepth-class.html
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__getitem__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__getitem__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.keys	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#keys
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__iter__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__iter__
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.has_key	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#has_key
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap._translate_id	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#_translate_id
Bio.PDB.AbstractPropertyMap.AbstractPropertyMap.__len__	Bio.PDB.AbstractPropertyMap.AbstractPropertyMap-class.html#__len__
Bio.PDB.ResidueDepth'.ResidueDepth.__init__	Bio.PDB.ResidueDepth%27.ResidueDepth-class.html#__init__
Bio.PDB.Structure.Structure	Bio.PDB.Structure.Structure-class.html
Bio.PDB.Entity.Entity.get_level	Bio.PDB.Entity.Entity-class.html#get_level
Bio.PDB.Structure.Structure.get_chains	Bio.PDB.Structure.Structure-class.html#get_chains
Bio.PDB.Entity.Entity.get_iterator	Bio.PDB.Entity.Entity-class.html#get_iterator
Bio.PDB.Entity.Entity.has_id	Bio.PDB.Entity.Entity-class.html#has_id
Bio.PDB.Structure.Structure._sort	Bio.PDB.Structure.Structure-class.html#_sort
Bio.PDB.Structure.Structure.get_residues	Bio.PDB.Structure.Structure-class.html#get_residues
Bio.PDB.Entity.Entity.__getitem__	Bio.PDB.Entity.Entity-class.html#__getitem__
Bio.PDB.Entity.Entity.get_id	Bio.PDB.Entity.Entity-class.html#get_id
Bio.PDB.Structure.Structure.get_atoms	Bio.PDB.Structure.Structure-class.html#get_atoms
Bio.PDB.Entity.Entity.get_list	Bio.PDB.Entity.Entity-class.html#get_list
Bio.PDB.Entity.Entity.__len__	Bio.PDB.Entity.Entity-class.html#__len__
Bio.PDB.Entity.Entity.__iter__	Bio.PDB.Entity.Entity-class.html#__iter__
Bio.PDB.Entity.Entity.get_full_id	Bio.PDB.Entity.Entity-class.html#get_full_id
Bio.PDB.Structure.Structure.__repr__	Bio.PDB.Structure.Structure-class.html#__repr__
Bio.PDB.Entity.Entity.detach_child	Bio.PDB.Entity.Entity-class.html#detach_child
Bio.PDB.Entity.Entity.get_parent	Bio.PDB.Entity.Entity-class.html#get_parent
Bio.PDB.Entity.Entity.add	Bio.PDB.Entity.Entity-class.html#add
Bio.PDB.Entity.Entity.set_parent	Bio.PDB.Entity.Entity-class.html#set_parent
Bio.PDB.Structure.Structure.__init__	Bio.PDB.Structure.Structure-class.html#__init__
Bio.PDB.Entity.Entity.detach_parent	Bio.PDB.Entity.Entity-class.html#detach_parent
Bio.PDB.StructureAlignment'.StructureAlignment	Bio.PDB.StructureAlignment%27.StructureAlignment-class.html
Bio.PDB.StructureAlignment'.StructureAlignment.__init__	Bio.PDB.StructureAlignment%27.StructureAlignment-class.html#__init__
Bio.PDB.StructureAlignment'.StructureAlignment._test_equivalence	Bio.PDB.StructureAlignment%27.StructureAlignment-class.html#_test_equivalence
Bio.PDB.StructureAlignment'.StructureAlignment.get_iterator	Bio.PDB.StructureAlignment%27.StructureAlignment-class.html#get_iterator
Bio.PDB.StructureAlignment'.StructureAlignment.get_maps	Bio.PDB.StructureAlignment%27.StructureAlignment-class.html#get_maps
Bio.PDB.StructureBuilder.StructureBuilder	Bio.PDB.StructureBuilder.StructureBuilder-class.html
Bio.PDB.StructureBuilder.StructureBuilder.set_header	Bio.PDB.StructureBuilder.StructureBuilder-class.html#set_header
Bio.PDB.StructureBuilder.StructureBuilder.init_atom	Bio.PDB.StructureBuilder.StructureBuilder-class.html#init_atom
Bio.PDB.StructureBuilder.StructureBuilder.set_symmetry	Bio.PDB.StructureBuilder.StructureBuilder-class.html#set_symmetry
Bio.PDB.StructureBuilder.StructureBuilder.set_anisou	Bio.PDB.StructureBuilder.StructureBuilder-class.html#set_anisou
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Bio.PDB.StructureBuilder.StructureBuilder.set_line_counter	Bio.PDB.StructureBuilder.StructureBuilder-class.html#set_line_counter
Bio.PDB.StructureBuilder.StructureBuilder.get_structure	Bio.PDB.StructureBuilder.StructureBuilder-class.html#get_structure
Bio.PDB.StructureBuilder.StructureBuilder.init_seg	Bio.PDB.StructureBuilder.StructureBuilder-class.html#init_seg
Bio.PDB.StructureBuilder.StructureBuilder.__init__	Bio.PDB.StructureBuilder.StructureBuilder-class.html#__init__
Bio.PDB.StructureBuilder.StructureBuilder.init_model	Bio.PDB.StructureBuilder.StructureBuilder-class.html#init_model
Bio.PDB.StructureBuilder.StructureBuilder.set_sigatm	Bio.PDB.StructureBuilder.StructureBuilder-class.html#set_sigatm
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Bio.PDB.Superimposer'.Superimposer	Bio.PDB.Superimposer%27.Superimposer-class.html
Bio.PDB.Superimposer'.Superimposer.apply	Bio.PDB.Superimposer%27.Superimposer-class.html#apply
Bio.PDB.Superimposer'.Superimposer.set_atoms	Bio.PDB.Superimposer%27.Superimposer-class.html#set_atoms
Bio.PDB.Superimposer'.Superimposer.__init__	Bio.PDB.Superimposer%27.Superimposer-class.html#__init__
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Bio.PDB.Vector'.Vector.get_array	Bio.PDB.Vector%27.Vector-class.html#get_array
Bio.PDB.Vector'.Vector.__init__	Bio.PDB.Vector%27.Vector-class.html#__init__
Bio.PDB.Vector'.Vector.__setitem__	Bio.PDB.Vector%27.Vector-class.html#__setitem__
Bio.PDB.Vector'.Vector.right_multiply	Bio.PDB.Vector%27.Vector-class.html#right_multiply
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Bio.PDB.Vector'.Vector.__add__	Bio.PDB.Vector%27.Vector-class.html#__add__
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Bio.PDB.Vector'.Vector.copy	Bio.PDB.Vector%27.Vector-class.html#copy
Bio.PDB.Vector'.Vector.norm	Bio.PDB.Vector%27.Vector-class.html#norm
Bio.PDB.Vector'.Vector.__mul__	Bio.PDB.Vector%27.Vector-class.html#__mul__
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Bio.ParserSupport.AbstractConsumer.__getattr__	Bio.ParserSupport.AbstractConsumer-class.html#__getattr__
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Bio.ParserSupport.AbstractParser	Bio.ParserSupport.AbstractParser-class.html
Bio.ParserSupport.AbstractParser.parse	Bio.ParserSupport.AbstractParser-class.html#parse
Bio.ParserSupport.AbstractParser.parse_file	Bio.ParserSupport.AbstractParser-class.html#parse_file
Bio.ParserSupport.AbstractParser.parse_str	Bio.ParserSupport.AbstractParser-class.html#parse_str
Bio.ParserSupport.EventGenerator	Bio.ParserSupport.EventGenerator-class.html
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Bio.ParserSupport.EventGenerator.characters	Bio.ParserSupport.EventGenerator-class.html#characters
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Bio.ParserSupport.SGMLStrippingConsumer	Bio.ParserSupport.SGMLStrippingConsumer-class.html
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Bio.ParserSupport.TaggingConsumer	Bio.ParserSupport.TaggingConsumer-class.html
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Bio.ParserSupport.TaggingConsumer.unhandled	Bio.ParserSupport.TaggingConsumer-class.html#unhandled
Bio.ParserSupport.TaggingConsumer.__init__	Bio.ParserSupport.TaggingConsumer-class.html#__init__
Bio.Parsers.spark.GenericASTBuilder	Bio.Parsers.spark.GenericASTBuilder-class.html
Bio.Parsers.spark.GenericParser.collectRules	Bio.Parsers.spark.GenericParser-class.html#collectRules
Bio.Parsers.spark.GenericParser.parse	Bio.Parsers.spark.GenericParser-class.html#parse
Bio.Parsers.spark.GenericParser.resolve	Bio.Parsers.spark.GenericParser-class.html#resolve
Bio.Parsers.spark.GenericASTBuilder.buildASTNode	Bio.Parsers.spark.GenericASTBuilder-class.html#buildASTNode
Bio.Parsers.spark.GenericParser.augment	Bio.Parsers.spark.GenericParser-class.html#augment
Bio.Parsers.spark.GenericParser.buildTree	Bio.Parsers.spark.GenericParser-class.html#buildTree
Bio.Parsers.spark.GenericParser.addRule	Bio.Parsers.spark.GenericParser-class.html#addRule
Bio.Parsers.spark.GenericParser.error	Bio.Parsers.spark.GenericParser-class.html#error
Bio.Parsers.spark.GenericParser.buildState	Bio.Parsers.spark.GenericParser-class.html#buildState
Bio.Parsers.spark.GenericASTBuilder.terminal	Bio.Parsers.spark.GenericASTBuilder-class.html#terminal
Bio.Parsers.spark.GenericParser.typestring	Bio.Parsers.spark.GenericParser-class.html#typestring
Bio.Parsers.spark.GenericASTBuilder.__init__	Bio.Parsers.spark.GenericASTBuilder-class.html#__init__
Bio.Parsers.spark.GenericParser.ambiguity	Bio.Parsers.spark.GenericParser-class.html#ambiguity
Bio.Parsers.spark.GenericParser._EOF	Bio.Parsers.spark.GenericParser-class.html#_EOF
Bio.Parsers.spark.GenericASTBuilder.preprocess	Bio.Parsers.spark.GenericASTBuilder-class.html#preprocess
Bio.Parsers.spark.GenericParser.makeFIRST	Bio.Parsers.spark.GenericParser-class.html#makeFIRST
Bio.Parsers.spark.GenericParser._START	Bio.Parsers.spark.GenericParser-class.html#_START
Bio.Parsers.spark.GenericParser.buildTree_r	Bio.Parsers.spark.GenericParser-class.html#buildTree_r
Bio.Parsers.spark.GenericASTBuilder.nonterminal	Bio.Parsers.spark.GenericASTBuilder-class.html#nonterminal
Bio.Parsers.spark.GenericASTMatcher	Bio.Parsers.spark.GenericASTMatcher-class.html
Bio.Parsers.spark.GenericParser.collectRules	Bio.Parsers.spark.GenericParser-class.html#collectRules
Bio.Parsers.spark.GenericASTMatcher.resolve	Bio.Parsers.spark.GenericASTMatcher-class.html#resolve
Bio.Parsers.spark.GenericParser.augment	Bio.Parsers.spark.GenericParser-class.html#augment
Bio.Parsers.spark.GenericParser.buildTree	Bio.Parsers.spark.GenericParser-class.html#buildTree
Bio.Parsers.spark.GenericParser.addRule	Bio.Parsers.spark.GenericParser-class.html#addRule
Bio.Parsers.spark.GenericParser.buildTree_r	Bio.Parsers.spark.GenericParser-class.html#buildTree_r
Bio.Parsers.spark.GenericParser._START	Bio.Parsers.spark.GenericParser-class.html#_START
Bio.Parsers.spark.GenericParser.buildState	Bio.Parsers.spark.GenericParser-class.html#buildState
Bio.Parsers.spark.GenericParser.parse	Bio.Parsers.spark.GenericParser-class.html#parse
Bio.Parsers.spark.GenericParser.typestring	Bio.Parsers.spark.GenericParser-class.html#typestring
Bio.Parsers.spark.GenericASTMatcher.foundMatch	Bio.Parsers.spark.GenericASTMatcher-class.html#foundMatch
Bio.Parsers.spark.GenericParser.ambiguity	Bio.Parsers.spark.GenericParser-class.html#ambiguity
Bio.Parsers.spark.GenericParser._EOF	Bio.Parsers.spark.GenericParser-class.html#_EOF
Bio.Parsers.spark.GenericASTMatcher.preprocess	Bio.Parsers.spark.GenericASTMatcher-class.html#preprocess
Bio.Parsers.spark.GenericParser.makeFIRST	Bio.Parsers.spark.GenericParser-class.html#makeFIRST
Bio.Parsers.spark.GenericASTMatcher.match	Bio.Parsers.spark.GenericASTMatcher-class.html#match
Bio.Parsers.spark.GenericParser.error	Bio.Parsers.spark.GenericParser-class.html#error
Bio.Parsers.spark.GenericASTMatcher.__init__	Bio.Parsers.spark.GenericASTMatcher-class.html#__init__
Bio.Parsers.spark.GenericASTMatcher.match_r	Bio.Parsers.spark.GenericASTMatcher-class.html#match_r
Bio.Parsers.spark.GenericASTTraversal	Bio.Parsers.spark.GenericASTTraversal-class.html
Bio.Parsers.spark.GenericASTTraversal.preorder	Bio.Parsers.spark.GenericASTTraversal-class.html#preorder
Bio.Parsers.spark.GenericASTTraversal.prune	Bio.Parsers.spark.GenericASTTraversal-class.html#prune
Bio.Parsers.spark.GenericASTTraversal.default	Bio.Parsers.spark.GenericASTTraversal-class.html#default
Bio.Parsers.spark.GenericASTTraversal.typestring	Bio.Parsers.spark.GenericASTTraversal-class.html#typestring
Bio.Parsers.spark.GenericASTTraversal.__init__	Bio.Parsers.spark.GenericASTTraversal-class.html#__init__
Bio.Parsers.spark.GenericASTTraversal.postorder	Bio.Parsers.spark.GenericASTTraversal-class.html#postorder
Bio.Parsers.spark.GenericASTTraversalPruningException	Bio.Parsers.spark.GenericASTTraversalPruningException-class.html
Bio.Parsers.spark.GenericParser	Bio.Parsers.spark.GenericParser-class.html
Bio.Parsers.spark.GenericParser.resolve	Bio.Parsers.spark.GenericParser-class.html#resolve
Bio.Parsers.spark.GenericParser.augment	Bio.Parsers.spark.GenericParser-class.html#augment
Bio.Parsers.spark.GenericParser.typestring	Bio.Parsers.spark.GenericParser-class.html#typestring
Bio.Parsers.spark.GenericParser.addRule	Bio.Parsers.spark.GenericParser-class.html#addRule
Bio.Parsers.spark.GenericParser._EOF	Bio.Parsers.spark.GenericParser-class.html#_EOF
Bio.Parsers.spark.GenericParser.buildState	Bio.Parsers.spark.GenericParser-class.html#buildState
Bio.Parsers.spark.GenericParser.parse	Bio.Parsers.spark.GenericParser-class.html#parse
Bio.Parsers.spark.GenericParser.buildTree	Bio.Parsers.spark.GenericParser-class.html#buildTree
Bio.Parsers.spark.GenericParser._START	Bio.Parsers.spark.GenericParser-class.html#_START
Bio.Parsers.spark.GenericParser.ambiguity	Bio.Parsers.spark.GenericParser-class.html#ambiguity
Bio.Parsers.spark.GenericParser.error	Bio.Parsers.spark.GenericParser-class.html#error
Bio.Parsers.spark.GenericParser.preprocess	Bio.Parsers.spark.GenericParser-class.html#preprocess
Bio.Parsers.spark.GenericParser.makeFIRST	Bio.Parsers.spark.GenericParser-class.html#makeFIRST
Bio.Parsers.spark.GenericParser.collectRules	Bio.Parsers.spark.GenericParser-class.html#collectRules
Bio.Parsers.spark.GenericParser.buildTree_r	Bio.Parsers.spark.GenericParser-class.html#buildTree_r
Bio.Parsers.spark.GenericParser.__init__	Bio.Parsers.spark.GenericParser-class.html#__init__
Bio.Parsers.spark.GenericScanner	Bio.Parsers.spark.GenericScanner-class.html
Bio.Parsers.spark.GenericScanner.error	Bio.Parsers.spark.GenericScanner-class.html#error
Bio.Parsers.spark.GenericScanner.makeRE	Bio.Parsers.spark.GenericScanner-class.html#makeRE
Bio.Parsers.spark.GenericScanner.reflect	Bio.Parsers.spark.GenericScanner-class.html#reflect
Bio.Parsers.spark.GenericScanner.t_default	Bio.Parsers.spark.GenericScanner-class.html#t_default
Bio.Parsers.spark.GenericScanner.tokenize	Bio.Parsers.spark.GenericScanner-class.html#tokenize
Bio.Parsers.spark.GenericScanner.__init__	Bio.Parsers.spark.GenericScanner-class.html#__init__
Bio.Pathway.Interaction	Bio.Pathway.Interaction-class.html
Bio.Pathway.Interaction.__hash__	Bio.Pathway.Interaction-class.html#__hash__
Bio.Pathway.Interaction.__str__	Bio.Pathway.Interaction-class.html#__str__
Bio.Pathway.Interaction.__init_	Bio.Pathway.Interaction-class.html#__init_
Bio.Pathway.Interaction.__repr__	Bio.Pathway.Interaction-class.html#__repr__
Bio.Pathway.Network	Bio.Pathway.Network-class.html
Bio.Pathway.Network.__repr__	Bio.Pathway.Network-class.html#__repr__
Bio.Pathway.Network.source_interactions	Bio.Pathway.Network-class.html#source_interactions
Bio.Pathway.Network.interactions	Bio.Pathway.Network-class.html#interactions
Bio.Pathway.Network.__str__	Bio.Pathway.Network-class.html#__str__
Bio.Pathway.Network.source	Bio.Pathway.Network-class.html#source
Bio.Pathway.Network.add_interaction	Bio.Pathway.Network-class.html#add_interaction
Bio.Pathway.Network.sink	Bio.Pathway.Network-class.html#sink
Bio.Pathway.Network.sink_interactions	Bio.Pathway.Network-class.html#sink_interactions
Bio.Pathway.Network.species	Bio.Pathway.Network-class.html#species
Bio.Pathway.Network.__init__	Bio.Pathway.Network-class.html#__init__
Bio.Pathway.Network.add_species	Bio.Pathway.Network-class.html#add_species
Bio.Pathway.Reaction	Bio.Pathway.Reaction-class.html
Bio.Pathway.Reaction.__ne__	Bio.Pathway.Reaction-class.html#__ne__
Bio.Pathway.Reaction.reverse	Bio.Pathway.Reaction-class.html#reverse
Bio.Pathway.Reaction.__str__	Bio.Pathway.Reaction-class.html#__str__
Bio.Pathway.Reaction.__repr__	Bio.Pathway.Reaction-class.html#__repr__
Bio.Pathway.Reaction.__hash__	Bio.Pathway.Reaction-class.html#__hash__
Bio.Pathway.Reaction.__eq__	Bio.Pathway.Reaction-class.html#__eq__
Bio.Pathway.Reaction.species	Bio.Pathway.Reaction-class.html#species
Bio.Pathway.Reaction.__init__	Bio.Pathway.Reaction-class.html#__init__
Bio.Pathway.Rep.Graph.Graph	Bio.Pathway.Rep.Graph.Graph-class.html
Bio.Pathway.Rep.Graph.Graph.__ne__	Bio.Pathway.Rep.Graph.Graph-class.html#__ne__
Bio.Pathway.Rep.Graph.Graph.add_edge	Bio.Pathway.Rep.Graph.Graph-class.html#add_edge
Bio.Pathway.Rep.Graph.Graph.add_node	Bio.Pathway.Rep.Graph.Graph-class.html#add_node
Bio.Pathway.Rep.Graph.Graph.__str__	Bio.Pathway.Rep.Graph.Graph-class.html#__str__
Bio.Pathway.Rep.Graph.Graph.labels	Bio.Pathway.Rep.Graph.Graph-class.html#labels
Bio.Pathway.Rep.Graph.Graph.child_edges	Bio.Pathway.Rep.Graph.Graph-class.html#child_edges
Bio.Pathway.Rep.Graph.Graph.edges	Bio.Pathway.Rep.Graph.Graph-class.html#edges
Bio.Pathway.Rep.Graph.Graph.parents	Bio.Pathway.Rep.Graph.Graph-class.html#parents
Bio.Pathway.Rep.Graph.Graph.__repr__	Bio.Pathway.Rep.Graph.Graph-class.html#__repr__
Bio.Pathway.Rep.Graph.Graph.remove_node	Bio.Pathway.Rep.Graph.Graph-class.html#remove_node
Bio.Pathway.Rep.Graph.Graph.nodes	Bio.Pathway.Rep.Graph.Graph-class.html#nodes
Bio.Pathway.Rep.Graph.Graph.parent_edges	Bio.Pathway.Rep.Graph.Graph-class.html#parent_edges
Bio.Pathway.Rep.Graph.Graph.__eq__	Bio.Pathway.Rep.Graph.Graph-class.html#__eq__
Bio.Pathway.Rep.Graph.Graph.children	Bio.Pathway.Rep.Graph.Graph-class.html#children
Bio.Pathway.Rep.Graph.Graph.__init__	Bio.Pathway.Rep.Graph.Graph-class.html#__init__
Bio.Pathway.Rep.Graph.Graph.remove_edge	Bio.Pathway.Rep.Graph.Graph-class.html#remove_edge
Bio.Pathway.Rep.HashSet.HashSet	Bio.Pathway.Rep.HashSet.HashSet-class.html
Bio.Pathway.Rep.HashSet.HashSet.__ne__	Bio.Pathway.Rep.HashSet.HashSet-class.html#__ne__
Bio.Pathway.Rep.HashSet.HashSet.intersection	Bio.Pathway.Rep.HashSet.HashSet-class.html#intersection
Bio.Pathway.Rep.HashSet.HashSet.cartesian	Bio.Pathway.Rep.HashSet.HashSet-class.html#cartesian
Bio.Pathway.Rep.HashSet.HashSet.__contains__	Bio.Pathway.Rep.HashSet.HashSet-class.html#__contains__
Bio.Pathway.Rep.HashSet.HashSet.union	Bio.Pathway.Rep.HashSet.HashSet-class.html#union
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Bio.Pathway.Rep.HashSet.HashSet.contains	Bio.Pathway.Rep.HashSet.HashSet-class.html#contains
Bio.Pathway.Rep.HashSet.HashSet.list	Bio.Pathway.Rep.HashSet.HashSet-class.html#list
Bio.Pathway.Rep.HashSet.HashSet.remove	Bio.Pathway.Rep.HashSet.HashSet-class.html#remove
Bio.Pathway.Rep.HashSet.HashSet.add	Bio.Pathway.Rep.HashSet.HashSet-class.html#add
Bio.Pathway.Rep.HashSet.HashSet.__len__	Bio.Pathway.Rep.HashSet.HashSet-class.html#__len__
Bio.Pathway.Rep.HashSet.HashSet.__init__	Bio.Pathway.Rep.HashSet.HashSet-class.html#__init__
Bio.Pathway.Rep.HashSet.HashSet.difference	Bio.Pathway.Rep.HashSet.HashSet-class.html#difference
Bio.Pathway.Rep.HashSet.HashSet.__eq__	Bio.Pathway.Rep.HashSet.HashSet-class.html#__eq__
Bio.Pathway.Rep.HashSet.HashSet.empty	Bio.Pathway.Rep.HashSet.HashSet-class.html#empty
Bio.Pathway.Rep.HashSet.HashSet.__repr__	Bio.Pathway.Rep.HashSet.HashSet-class.html#__repr__
Bio.Pathway.Rep.MultiGraph.MultiGraph	Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html
Bio.Pathway.Rep.MultiGraph.MultiGraph.__ne__	Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#__ne__
Bio.Pathway.Rep.MultiGraph.MultiGraph.add_edge	Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#add_edge
Bio.Pathway.Rep.MultiGraph.MultiGraph.add_node	Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#add_node
Bio.Pathway.Rep.MultiGraph.MultiGraph.__str__	Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#__str__
Bio.Pathway.Rep.MultiGraph.MultiGraph.labels	Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#labels
Bio.Pathway.Rep.MultiGraph.MultiGraph.child_edges	Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#child_edges
Bio.Pathway.Rep.MultiGraph.MultiGraph.edges	Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#edges
Bio.Pathway.Rep.MultiGraph.MultiGraph.parents	Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#parents
Bio.Pathway.Rep.MultiGraph.MultiGraph.__repr__	Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#__repr__
Bio.Pathway.Rep.MultiGraph.MultiGraph.remove_node	Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#remove_node
Bio.Pathway.Rep.MultiGraph.MultiGraph.nodes	Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#nodes
Bio.Pathway.Rep.MultiGraph.MultiGraph.parent_edges	Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#parent_edges
Bio.Pathway.Rep.MultiGraph.MultiGraph.__eq__	Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#__eq__
Bio.Pathway.Rep.MultiGraph.MultiGraph.children	Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#children
Bio.Pathway.Rep.MultiGraph.MultiGraph.__init__	Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#__init__
Bio.Pathway.Rep.MultiGraph.MultiGraph.remove_edge	Bio.Pathway.Rep.MultiGraph.MultiGraph-class.html#remove_edge
Bio.Pathway.System	Bio.Pathway.System-class.html
Bio.Pathway.System.remove_reaction	Bio.Pathway.System-class.html#remove_reaction
Bio.Pathway.System.stochiometry	Bio.Pathway.System-class.html#stochiometry
Bio.Pathway.System.reactions	Bio.Pathway.System-class.html#reactions
Bio.Pathway.System.add_reaction	Bio.Pathway.System-class.html#add_reaction
Bio.Pathway.System.__str__	Bio.Pathway.System-class.html#__str__
Bio.Pathway.System.__repr__	Bio.Pathway.System-class.html#__repr__
Bio.Pathway.System.species	Bio.Pathway.System-class.html#species
Bio.Pathway.System.__init__	Bio.Pathway.System-class.html#__init__
Bio.PopGen.Async.Async	Bio.PopGen.Async.Async-class.html
Bio.PopGen.Async.Async.run_program	Bio.PopGen.Async.Async-class.html#run_program
Bio.PopGen.Async.Async.get_result	Bio.PopGen.Async.Async-class.html#get_result
Bio.PopGen.Async.Async.__init__	Bio.PopGen.Async.Async-class.html#__init__
Bio.PopGen.Async.DirectoryRetriever	Bio.PopGen.Async.DirectoryRetriever-class.html
Bio.PopGen.Async.DirectoryRetriever.get_file	Bio.PopGen.Async.DirectoryRetriever-class.html#get_file
Bio.PopGen.Async.DirectoryRetriever.__init__	Bio.PopGen.Async.DirectoryRetriever-class.html#__init__
Bio.PopGen.Async.FileRetriever.get_File_list	Bio.PopGen.Async.FileRetriever-class.html#get_File_list
Bio.PopGen.Async.FileRetriever	Bio.PopGen.Async.FileRetriever-class.html
Bio.PopGen.Async.FileRetriever.get_file	Bio.PopGen.Async.FileRetriever-class.html#get_file
Bio.PopGen.Async.FileRetriever.__init__	Bio.PopGen.Async.FileRetriever-class.html#__init__
Bio.PopGen.Async.FileRetriever.get_File_list	Bio.PopGen.Async.FileRetriever-class.html#get_File_list
Bio.PopGen.Async.Local.Local	Bio.PopGen.Async.Local.Local-class.html
Bio.PopGen.Async.Async.run_program	Bio.PopGen.Async.Async-class.html#run_program
Bio.PopGen.Async.Async.get_result	Bio.PopGen.Async.Async-class.html#get_result
Bio.PopGen.Async.Local.Local.__init__	Bio.PopGen.Async.Local.Local-class.html#__init__
Bio.PopGen.Async.Local.Local.start_work	Bio.PopGen.Async.Local.Local-class.html#start_work
Bio.PopGen.Async.Local.Local._run_program	Bio.PopGen.Async.Local.Local-class.html#_run_program
Bio.PopGen.FDist.Async.FDistAsync	Bio.PopGen.FDist.Async.FDistAsync-class.html
Bio.PopGen.FDist.Controller.FDistController.run_fdist	Bio.PopGen.FDist.Controller.FDistController-class.html#run_fdist
Bio.PopGen.FDist.Controller.FDistController._generate_intfile	Bio.PopGen.FDist.Controller.FDistController-class.html#_generate_intfile
Bio.PopGen.FDist.Controller.FDistController.run_datacal	Bio.PopGen.FDist.Controller.FDistController-class.html#run_datacal
Bio.PopGen.FDist.Controller.FDistController.run_cplot	Bio.PopGen.FDist.Controller.FDistController-class.html#run_cplot
Bio.PopGen.FDist.Controller.FDistController._get_path	Bio.PopGen.FDist.Controller.FDistController-class.html#_get_path
Bio.PopGen.FDist.Controller.FDistController.run_fdist_force_fst	Bio.PopGen.FDist.Controller.FDistController-class.html#run_fdist_force_fst
Bio.PopGen.FDist.Controller.FDistController._get_temp_file	Bio.PopGen.FDist.Controller.FDistController-class.html#_get_temp_file
Bio.PopGen.FDist.Controller.FDistController.run_pv	Bio.PopGen.FDist.Controller.FDistController-class.html#run_pv
Bio.PopGen.FDist.Async.FDistAsync.run_job	Bio.PopGen.FDist.Async.FDistAsync-class.html#run_job
Bio.PopGen.FDist.Async.FDistAsync.__init__	Bio.PopGen.FDist.Async.FDistAsync-class.html#__init__
Bio.PopGen.FDist.Async.SplitFDist	Bio.PopGen.FDist.Async.SplitFDist-class.html
Bio.PopGen.FDist.Async.SplitFDist.release	Bio.PopGen.FDist.Async.SplitFDist-class.html#release
Bio.PopGen.FDist.Async.SplitFDist.run_fdist	Bio.PopGen.FDist.Async.SplitFDist-class.html#run_fdist
Bio.PopGen.FDist.Async.SplitFDist.acquire	Bio.PopGen.FDist.Async.SplitFDist-class.html#acquire
Bio.PopGen.FDist.Async.SplitFDist.monitor	Bio.PopGen.FDist.Async.SplitFDist-class.html#monitor
Bio.PopGen.FDist.Async.SplitFDist.__init__	Bio.PopGen.FDist.Async.SplitFDist-class.html#__init__
Bio.PopGen.FDist.Controller.FDistController	Bio.PopGen.FDist.Controller.FDistController-class.html
Bio.PopGen.FDist.Controller.FDistController.run_fdist	Bio.PopGen.FDist.Controller.FDistController-class.html#run_fdist
Bio.PopGen.FDist.Controller.FDistController._generate_intfile	Bio.PopGen.FDist.Controller.FDistController-class.html#_generate_intfile
Bio.PopGen.FDist.Controller.FDistController.run_datacal	Bio.PopGen.FDist.Controller.FDistController-class.html#run_datacal
Bio.PopGen.FDist.Controller.FDistController.run_cplot	Bio.PopGen.FDist.Controller.FDistController-class.html#run_cplot
Bio.PopGen.FDist.Controller.FDistController._get_path	Bio.PopGen.FDist.Controller.FDistController-class.html#_get_path
Bio.PopGen.FDist.Controller.FDistController.run_fdist_force_fst	Bio.PopGen.FDist.Controller.FDistController-class.html#run_fdist_force_fst
Bio.PopGen.FDist.Controller.FDistController._get_temp_file	Bio.PopGen.FDist.Controller.FDistController-class.html#_get_temp_file
Bio.PopGen.FDist.Controller.FDistController.run_pv	Bio.PopGen.FDist.Controller.FDistController-class.html#run_pv
Bio.PopGen.FDist.Controller.FDistController.__init__	Bio.PopGen.FDist.Controller.FDistController-class.html#__init__
Bio.PopGen.FDist.Record	Bio.PopGen.FDist.Record-class.html
Bio.PopGen.FDist.Record.__str__	Bio.PopGen.FDist.Record-class.html#__str__
Bio.PopGen.FDist.Record.__init__	Bio.PopGen.FDist.Record-class.html#__init__
Bio.PopGen.FDist.RecordParser	Bio.PopGen.FDist.RecordParser-class.html
Bio.PopGen.FDist.RecordParser.parse	Bio.PopGen.FDist.RecordParser-class.html#parse
Bio.ParserSupport.AbstractParser.parse_file	Bio.ParserSupport.AbstractParser-class.html#parse_file
Bio.ParserSupport.AbstractParser.parse_str	Bio.ParserSupport.AbstractParser-class.html#parse_str
Bio.PopGen.FDist.RecordParser.__init__	Bio.PopGen.FDist.RecordParser-class.html#__init__
Bio.PopGen.FDist._RecordConsumer	Bio.PopGen.FDist._RecordConsumer-class.html
Bio.PopGen.FDist._RecordConsumer.start_record	Bio.PopGen.FDist._RecordConsumer-class.html#start_record
Bio.PopGen.FDist._RecordConsumer.num_pops	Bio.PopGen.FDist._RecordConsumer-class.html#num_pops
Bio.PopGen.FDist._RecordConsumer.data_org	Bio.PopGen.FDist._RecordConsumer-class.html#data_org
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Bio.PopGen.FDist._RecordConsumer.num_loci	Bio.PopGen.FDist._RecordConsumer-class.html#num_loci
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Bio.PopGen.FDist._RecordConsumer.new_locus	Bio.PopGen.FDist._RecordConsumer-class.html#new_locus
Bio.PopGen.FDist._RecordConsumer.__init__	Bio.PopGen.FDist._RecordConsumer-class.html#__init__
Bio.PopGen.FDist._Scanner	Bio.PopGen.FDist._Scanner-class.html
Bio.PopGen.FDist._Scanner.feed	Bio.PopGen.FDist._Scanner-class.html#feed
Bio.PopGen.GenePop.Controller.GenePopController	Bio.PopGen.GenePop.Controller.GenePopController-class.html
Bio.PopGen.GenePop.Controller.GenePopController._run_genepop	Bio.PopGen.GenePop.Controller.GenePopController-class.html#_run_genepop
Bio.PopGen.GenePop.Controller.GenePopController.create_contingency_tables	Bio.PopGen.GenePop.Controller.GenePopController-class.html#create_contingency_tables
Bio.PopGen.GenePop.Controller.GenePopController.test_pop_hw_prob	Bio.PopGen.GenePop.Controller.GenePopController-class.html#test_pop_hw_prob
Bio.PopGen.GenePop.Controller.GenePopController.__init__	Bio.PopGen.GenePop.Controller.GenePopController-class.html#__init__
Bio.PopGen.GenePop.Controller.GenePopController.calc_rho_all	Bio.PopGen.GenePop.Controller.GenePopController-class.html#calc_rho_all
Bio.PopGen.GenePop.Controller.GenePopController._remove_garbage	Bio.PopGen.GenePop.Controller.GenePopController-class.html#_remove_garbage
Bio.PopGen.GenePop.Controller.GenePopController.calc_diversities_fis_with_size	Bio.PopGen.GenePop.Controller.GenePopController-class.html#calc_diversities_fis_with_size
Bio.PopGen.GenePop.Controller.GenePopController.test_genic_diff_all	Bio.PopGen.GenePop.Controller.GenePopController-class.html#test_genic_diff_all
Bio.PopGen.GenePop.Controller.GenePopController.calc_rho_pair	Bio.PopGen.GenePop.Controller.GenePopController-class.html#calc_rho_pair
Bio.PopGen.GenePop.Controller.GenePopController._test_global_hz_both	Bio.PopGen.GenePop.Controller.GenePopController-class.html#_test_global_hz_both
Bio.PopGen.GenePop.Controller.GenePopController.test_pop_hz_excess	Bio.PopGen.GenePop.Controller.GenePopController-class.html#test_pop_hz_excess
Bio.PopGen.GenePop.Controller.GenePopController._calc_diversities_fis	Bio.PopGen.GenePop.Controller.GenePopController-class.html#_calc_diversities_fis
Bio.PopGen.GenePop.Controller.GenePopController._calc_ibd	Bio.PopGen.GenePop.Controller.GenePopController-class.html#_calc_ibd
Bio.PopGen.GenePop.Controller.GenePopController.test_pop_hz_deficiency	Bio.PopGen.GenePop.Controller.GenePopController-class.html#test_pop_hz_deficiency
Bio.PopGen.GenePop.Controller.GenePopController._get_opts	Bio.PopGen.GenePop.Controller.GenePopController-class.html#_get_opts
Bio.PopGen.GenePop.Controller.GenePopController.test_global_hz_deficiency	Bio.PopGen.GenePop.Controller.GenePopController-class.html#test_global_hz_deficiency
Bio.PopGen.GenePop.Controller.GenePopController.calc_ibd_diplo	Bio.PopGen.GenePop.Controller.GenePopController-class.html#calc_ibd_diplo
Bio.PopGen.GenePop.Controller.GenePopController.estimate_nm	Bio.PopGen.GenePop.Controller.GenePopController-class.html#estimate_nm
Bio.PopGen.GenePop.Controller.GenePopController.calc_ibd_haplo	Bio.PopGen.GenePop.Controller.GenePopController-class.html#calc_ibd_haplo
Bio.PopGen.GenePop.Controller.GenePopController.test_genotypic_diff_pair	Bio.PopGen.GenePop.Controller.GenePopController-class.html#test_genotypic_diff_pair
Bio.PopGen.GenePop.Controller.GenePopController.test_genotypic_diff_all	Bio.PopGen.GenePop.Controller.GenePopController-class.html#test_genotypic_diff_all
Bio.PopGen.GenePop.Controller.GenePopController.test_global_hz_excess	Bio.PopGen.GenePop.Controller.GenePopController-class.html#test_global_hz_excess
Bio.PopGen.GenePop.Controller.GenePopController.test_ld	Bio.PopGen.GenePop.Controller.GenePopController-class.html#test_ld
Bio.PopGen.GenePop.Controller.GenePopController.calc_fst_all	Bio.PopGen.GenePop.Controller.GenePopController-class.html#calc_fst_all
Bio.PopGen.GenePop.Controller.GenePopController.calc_fst_pair	Bio.PopGen.GenePop.Controller.GenePopController-class.html#calc_fst_pair
Bio.PopGen.GenePop.Controller.GenePopController.calc_allele_genotype_freqs	Bio.PopGen.GenePop.Controller.GenePopController-class.html#calc_allele_genotype_freqs
Bio.PopGen.GenePop.Controller.GenePopController._test_pop_hz_both	Bio.PopGen.GenePop.Controller.GenePopController-class.html#_test_pop_hz_both
Bio.PopGen.GenePop.Controller.GenePopController.test_genic_diff_pair	Bio.PopGen.GenePop.Controller.GenePopController-class.html#test_genic_diff_pair
Bio.PopGen.GenePop.Controller.GenePopController.calc_diversities_fis_with_identity	Bio.PopGen.GenePop.Controller.GenePopController-class.html#calc_diversities_fis_with_identity
Bio.PopGen.GenePop.Controller._FileIterator	Bio.PopGen.GenePop.Controller._FileIterator-class.html
Bio.PopGen.GenePop.Controller._FileIterator.__del__	Bio.PopGen.GenePop.Controller._FileIterator-class.html#__del__
Bio.PopGen.GenePop.Controller._FileIterator.__iter__	Bio.PopGen.GenePop.Controller._FileIterator-class.html#__iter__
Bio.PopGen.GenePop.Controller._FileIterator.__init__	Bio.PopGen.GenePop.Controller._FileIterator-class.html#__init__
Bio.PopGen.GenePop.Controller._FileIterator.next	Bio.PopGen.GenePop.Controller._FileIterator-class.html#next
Bio.PopGen.GenePop.Controller._GenePopCommandline	Bio.PopGen.GenePop.Controller._GenePopCommandline-class.html
Bio.PopGen.GenePop.Controller._GenePopCommandline.set_input	Bio.PopGen.GenePop.Controller._GenePopCommandline-class.html#set_input
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
Bio.PopGen.GenePop.Controller._GenePopCommandline.set_menu	Bio.PopGen.GenePop.Controller._GenePopCommandline-class.html#set_menu
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__repr__	Bio.Application.AbstractCommandline-class.html#__repr__
Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.PopGen.GenePop.Controller._GenePopCommandline.__init__	Bio.PopGen.GenePop.Controller._GenePopCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.PopGen.GenePop.EasyController.EasyController	Bio.PopGen.GenePop.EasyController.EasyController-class.html
Bio.PopGen.GenePop.EasyController.EasyController.get_basic_info	Bio.PopGen.GenePop.EasyController.EasyController-class.html#get_basic_info
Bio.PopGen.GenePop.EasyController.EasyController.get_avg_fis	Bio.PopGen.GenePop.EasyController.EasyController-class.html#get_avg_fis
Bio.PopGen.GenePop.EasyController.EasyController.get_f_stats	Bio.PopGen.GenePop.EasyController.EasyController-class.html#get_f_stats
Bio.PopGen.GenePop.EasyController.EasyController.get_heterozygosity_info	Bio.PopGen.GenePop.EasyController.EasyController-class.html#get_heterozygosity_info
Bio.PopGen.GenePop.EasyController.EasyController.test_ld_all_pair	Bio.PopGen.GenePop.EasyController.EasyController-class.html#test_ld_all_pair
Bio.PopGen.GenePop.EasyController.EasyController.calc_ibd	Bio.PopGen.GenePop.EasyController.EasyController-class.html#calc_ibd
Bio.PopGen.GenePop.EasyController.EasyController.get_genotype_count	Bio.PopGen.GenePop.EasyController.EasyController-class.html#get_genotype_count
Bio.PopGen.GenePop.EasyController.EasyController.get_allele_frequency	Bio.PopGen.GenePop.EasyController.EasyController-class.html#get_allele_frequency
Bio.PopGen.GenePop.EasyController.EasyController.get_alleles_all_pops	Bio.PopGen.GenePop.EasyController.EasyController-class.html#get_alleles_all_pops
Bio.PopGen.GenePop.EasyController.EasyController.test_hw_global	Bio.PopGen.GenePop.EasyController.EasyController-class.html#test_hw_global
Bio.PopGen.GenePop.EasyController.EasyController.get_fis	Bio.PopGen.GenePop.EasyController.EasyController-class.html#get_fis
Bio.PopGen.GenePop.EasyController.EasyController.get_avg_fst_pair	Bio.PopGen.GenePop.EasyController.EasyController-class.html#get_avg_fst_pair
Bio.PopGen.GenePop.EasyController.EasyController.get_avg_fst_pair_locus	Bio.PopGen.GenePop.EasyController.EasyController-class.html#get_avg_fst_pair_locus
Bio.PopGen.GenePop.EasyController.EasyController.estimate_nm	Bio.PopGen.GenePop.EasyController.EasyController-class.html#estimate_nm
Bio.PopGen.GenePop.EasyController.EasyController.get_multilocus_f_stats	Bio.PopGen.GenePop.EasyController.EasyController-class.html#get_multilocus_f_stats
Bio.PopGen.GenePop.EasyController.EasyController.get_alleles	Bio.PopGen.GenePop.EasyController.EasyController-class.html#get_alleles
Bio.PopGen.GenePop.EasyController.EasyController.__init__	Bio.PopGen.GenePop.EasyController.EasyController-class.html#__init__
Bio.PopGen.GenePop.EasyController.EasyController.test_hw_pop	Bio.PopGen.GenePop.EasyController.EasyController-class.html#test_hw_pop
Bio.PopGen.GenePop.Record	Bio.PopGen.GenePop.Record-class.html
Bio.PopGen.GenePop.Record.split_in_pops	Bio.PopGen.GenePop.Record-class.html#split_in_pops
Bio.PopGen.GenePop.Record.split_in_loci	Bio.PopGen.GenePop.Record-class.html#split_in_loci
Bio.PopGen.GenePop.Record.remove_locus_by_position	Bio.PopGen.GenePop.Record-class.html#remove_locus_by_position
Bio.PopGen.GenePop.Record.remove_population	Bio.PopGen.GenePop.Record-class.html#remove_population
Bio.PopGen.GenePop.Record.__str__	Bio.PopGen.GenePop.Record-class.html#__str__
Bio.PopGen.GenePop.Record.remove_locus_by_name	Bio.PopGen.GenePop.Record-class.html#remove_locus_by_name
Bio.PopGen.GenePop.Record.__init__	Bio.PopGen.GenePop.Record-class.html#__init__
Bio.PopGen.GenePop.RecordParser	Bio.PopGen.GenePop.RecordParser-class.html
Bio.PopGen.GenePop.RecordParser.parse	Bio.PopGen.GenePop.RecordParser-class.html#parse
Bio.ParserSupport.AbstractParser.parse_file	Bio.ParserSupport.AbstractParser-class.html#parse_file
Bio.ParserSupport.AbstractParser.parse_str	Bio.ParserSupport.AbstractParser-class.html#parse_str
Bio.PopGen.GenePop.RecordParser.__init__	Bio.PopGen.GenePop.RecordParser-class.html#__init__
Bio.PopGen.GenePop._RecordConsumer	Bio.PopGen.GenePop._RecordConsumer-class.html
Bio.PopGen.GenePop._RecordConsumer.comment	Bio.PopGen.GenePop._RecordConsumer-class.html#comment
Bio.PopGen.GenePop._RecordConsumer.marker_len	Bio.PopGen.GenePop._RecordConsumer-class.html#marker_len
Bio.PopGen.GenePop._RecordConsumer.individual	Bio.PopGen.GenePop._RecordConsumer-class.html#individual
Bio.PopGen.GenePop._RecordConsumer.loci_name	Bio.PopGen.GenePop._RecordConsumer-class.html#loci_name
Bio.ParserSupport.AbstractConsumer._unhandled	Bio.ParserSupport.AbstractConsumer-class.html#_unhandled
Bio.PopGen.GenePop._RecordConsumer.end_record	Bio.PopGen.GenePop._RecordConsumer-class.html#end_record
Bio.PopGen.GenePop._RecordConsumer.start_pop	Bio.PopGen.GenePop._RecordConsumer-class.html#start_pop
Bio.ParserSupport.AbstractConsumer._unhandled_section	Bio.ParserSupport.AbstractConsumer-class.html#_unhandled_section
Bio.PopGen.GenePop._RecordConsumer.start_record	Bio.PopGen.GenePop._RecordConsumer-class.html#start_record
Bio.PopGen.GenePop._RecordConsumer.__init__	Bio.PopGen.GenePop._RecordConsumer-class.html#__init__
Bio.ParserSupport.AbstractConsumer.__getattr__	Bio.ParserSupport.AbstractConsumer-class.html#__getattr__
Bio.PopGen.GenePop._Scanner	Bio.PopGen.GenePop._Scanner-class.html
Bio.PopGen.GenePop._Scanner.feed	Bio.PopGen.GenePop._Scanner-class.html#feed
Bio.PopGen.SimCoal.Async.SimCoalCache	Bio.PopGen.SimCoal.Async.SimCoalCache-class.html
Bio.PopGen.SimCoal.Async.SimCoalCache.runJob	Bio.PopGen.SimCoal.Async.SimCoalCache-class.html#runJob
Bio.PopGen.SimCoal.Cache.SimCoalCache.listSimulations	Bio.PopGen.SimCoal.Cache.SimCoalCache-class.html#listSimulations
Bio.PopGen.SimCoal.Cache.SimCoalCache.getSimulation	Bio.PopGen.SimCoal.Cache.SimCoalCache-class.html#getSimulation
Bio.PopGen.SimCoal.Cache.SimCoalCache.run_simcoal	Bio.PopGen.SimCoal.Cache.SimCoalCache-class.html#run_simcoal
Bio.PopGen.SimCoal.Async.SimCoalCache.__init__	Bio.PopGen.SimCoal.Async.SimCoalCache-class.html#__init__
Bio.PopGen.SimCoal.Cache.SimCoalCache	Bio.PopGen.SimCoal.Cache.SimCoalCache-class.html
Bio.PopGen.SimCoal.Cache.SimCoalCache.listSimulations	Bio.PopGen.SimCoal.Cache.SimCoalCache-class.html#listSimulations
Bio.PopGen.SimCoal.Cache.SimCoalCache.getSimulation	Bio.PopGen.SimCoal.Cache.SimCoalCache-class.html#getSimulation
Bio.PopGen.SimCoal.Cache.SimCoalCache.run_simcoal	Bio.PopGen.SimCoal.Cache.SimCoalCache-class.html#run_simcoal
Bio.PopGen.SimCoal.Cache.SimCoalCache.__init__	Bio.PopGen.SimCoal.Cache.SimCoalCache-class.html#__init__
Bio.PopGen.SimCoal.Controller.SimCoalController	Bio.PopGen.SimCoal.Controller.SimCoalController-class.html
Bio.PopGen.SimCoal.Controller.SimCoalController.run_simcoal	Bio.PopGen.SimCoal.Controller.SimCoalController-class.html#run_simcoal
Bio.PopGen.SimCoal.Controller.SimCoalController.__init__	Bio.PopGen.SimCoal.Controller.SimCoalController-class.html#__init__
Bio.PropertyManager.CreateDict	Bio.PropertyManager.CreateDict-class.html
Bio.PropertyManager.CreateDict.__getitem__	Bio.PropertyManager.CreateDict-class.html#__getitem__
Bio.PropertyManager.PropertyManager	Bio.PropertyManager.PropertyManager-class.html
Bio.PropertyManager.PropertyManager.resolve	Bio.PropertyManager.PropertyManager-class.html#resolve
Bio.PropertyManager.PropertyManager.resolve_class	Bio.PropertyManager.PropertyManager-class.html#resolve_class
Bio.PropertyManager.PropertyManager.__init__	Bio.PropertyManager.PropertyManager-class.html#__init__
Bio.Prosite.Dictionary	Bio.Prosite.Dictionary-class.html
Bio.Prosite.Dictionary.__init__	Bio.Prosite.Dictionary-class.html#__init__
Bio.Prosite.Dictionary.__len__	Bio.Prosite.Dictionary-class.html#__len__
Bio.Prosite.Dictionary.__getattr__	Bio.Prosite.Dictionary-class.html#__getattr__
Bio.Prosite.Dictionary.__getitem__	Bio.Prosite.Dictionary-class.html#__getitem__
Bio.Prosite.Dictionary.__filename_key	Bio.Prosite.Dictionary-class.html#__filename_key
Bio.Prosite.Pattern.Prosite	Bio.Prosite.Pattern.Prosite-class.html
Bio.Prosite.Pattern.Prosite.search	Bio.Prosite.Pattern.Prosite-class.html#search
Bio.Prosite.Pattern.Prosite.__getslice__	Bio.Prosite.Pattern.Prosite-class.html#__getslice__
Bio.Prosite.Pattern.Prosite.__getitem__	Bio.Prosite.Pattern.Prosite-class.html#__getitem__
Bio.Prosite.Pattern.Prosite.alphabet	Bio.Prosite.Pattern.Prosite-class.html#alphabet
Bio.Prosite.Pattern.Prosite.__str__	Bio.Prosite.Pattern.Prosite-class.html#__str__
Bio.Prosite.Pattern.Prosite.__getattr__	Bio.Prosite.Pattern.Prosite-class.html#__getattr__
Bio.Prosite.Pattern.Prosite.__len__	Bio.Prosite.Pattern.Prosite-class.html#__len__
Bio.Prosite.Pattern.Prosite.tostring	Bio.Prosite.Pattern.Prosite-class.html#tostring
Bio.Prosite.Pattern.Prosite.__repr__	Bio.Prosite.Pattern.Prosite-class.html#__repr__
Bio.Prosite.Pattern.Prosite.match	Bio.Prosite.Pattern.Prosite-class.html#match
Bio.Prosite.Pattern.Prosite.__init__	Bio.Prosite.Pattern.Prosite-class.html#__init__
Bio.Prosite.Pattern.PrositeAlphabet	Bio.Prosite.Pattern.PrositeAlphabet-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.Alphabet.Alphabet.letters	Bio.Alphabet.Alphabet-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
Bio.Alphabet.Alphabet.size	Bio.Alphabet.Alphabet-class.html#size
Bio.Prosite.Pattern.PrositeMatch	Bio.Prosite.Pattern.PrositeMatch-class.html
Bio.Prosite.Pattern.PrositeMatch.end	Bio.Prosite.Pattern.PrositeMatch-class.html#end
Bio.Prosite.Pattern.PrositeMatch.__getslice__	Bio.Prosite.Pattern.PrositeMatch-class.html#__getslice__
Bio.Prosite.Pattern.PrositeMatch.__getitem__	Bio.Prosite.Pattern.PrositeMatch-class.html#__getitem__
Bio.Prosite.Pattern.PrositeMatch.__str__	Bio.Prosite.Pattern.PrositeMatch-class.html#__str__
Bio.Prosite.Pattern.PrositeMatch.mapped_pattern	Bio.Prosite.Pattern.PrositeMatch-class.html#mapped_pattern
Bio.Prosite.Pattern.PrositeMatch.mapping	Bio.Prosite.Pattern.PrositeMatch-class.html#mapping
Bio.Prosite.Pattern.PrositeMatch.start	Bio.Prosite.Pattern.PrositeMatch-class.html#start
Bio.Prosite.Pattern.PrositeMatch.__len__	Bio.Prosite.Pattern.PrositeMatch-class.html#__len__
Bio.Prosite.Pattern.PrositeMatch.__repr__	Bio.Prosite.Pattern.PrositeMatch-class.html#__repr__
Bio.Prosite.Pattern.PrositeMatch.groups	Bio.Prosite.Pattern.PrositeMatch-class.html#groups
Bio.Prosite.Pattern.PrositeMatch.span	Bio.Prosite.Pattern.PrositeMatch-class.html#span
Bio.Prosite.Pattern.PrositeMatch.group	Bio.Prosite.Pattern.PrositeMatch-class.html#group
Bio.Prosite.Pattern.PrositeMatch.__init__	Bio.Prosite.Pattern.PrositeMatch-class.html#__init__
Bio.Prosite.Pattern.PrositeTerm	Bio.Prosite.Pattern.PrositeTerm-class.html
Bio.Prosite.Pattern.PrositeTerm.__str__	Bio.Prosite.Pattern.PrositeTerm-class.html#__str__
Bio.Prosite.Pattern.PrositeTerm.base_str	Bio.Prosite.Pattern.PrositeTerm-class.html#base_str
Bio.Prosite.Pattern.PrositeTerm.copy	Bio.Prosite.Pattern.PrositeTerm-class.html#copy
Bio.Prosite.Pattern.PrositeTerm.__init__	Bio.Prosite.Pattern.PrositeTerm-class.html#__init__
Bio.Prosite.PatternHit	Bio.Prosite.PatternHit-class.html
Bio.Prosite.PatternHit.__str__	Bio.Prosite.PatternHit-class.html#__str__
Bio.Prosite.PatternHit.__init__	Bio.Prosite.PatternHit-class.html#__init__
Bio.Prosite.Prodoc.Dictionary	Bio.Prosite.Prodoc.Dictionary-class.html
Bio.Prosite.Prodoc.Dictionary.__init__	Bio.Prosite.Prodoc.Dictionary-class.html#__init__
Bio.Prosite.Prodoc.Dictionary.__len__	Bio.Prosite.Prodoc.Dictionary-class.html#__len__
Bio.Prosite.Prodoc.Dictionary.__getattr__	Bio.Prosite.Prodoc.Dictionary-class.html#__getattr__
Bio.Prosite.Prodoc.Dictionary.__getitem__	Bio.Prosite.Prodoc.Dictionary-class.html#__getitem__
Bio.Prosite.Prodoc.Dictionary.__filename_key	Bio.Prosite.Prodoc.Dictionary-class.html#__filename_key
Bio.Prosite.Prodoc.Record	Bio.Prosite.Prodoc.Record-class.html
Bio.Prosite.Prodoc.Record.__init__	Bio.Prosite.Prodoc.Record-class.html#__init__
Bio.Prosite.Prodoc.RecordParser	Bio.Prosite.Prodoc.RecordParser-class.html
Bio.Prosite.Prodoc.RecordParser.parse	Bio.Prosite.Prodoc.RecordParser-class.html#parse
Bio.ParserSupport.AbstractParser.parse_file	Bio.ParserSupport.AbstractParser-class.html#parse_file
Bio.ParserSupport.AbstractParser.parse_str	Bio.ParserSupport.AbstractParser-class.html#parse_str
Bio.Prosite.Prodoc.RecordParser.__init__	Bio.Prosite.Prodoc.RecordParser-class.html#__init__
Bio.Prosite.Prodoc.Reference	Bio.Prosite.Prodoc.Reference-class.html
Bio.Prosite.Prodoc.Reference.__init__	Bio.Prosite.Prodoc.Reference-class.html#__init__
Bio.Prosite.Prodoc._RecordConsumer	Bio.Prosite.Prodoc._RecordConsumer-class.html
Bio.Prosite.Prodoc._RecordConsumer.start_record	Bio.Prosite.Prodoc._RecordConsumer-class.html#start_record
Bio.Prosite.Prodoc._RecordConsumer.reference	Bio.Prosite.Prodoc._RecordConsumer-class.html#reference
Bio.Prosite.Prodoc._RecordConsumer.prosite_reference	Bio.Prosite.Prodoc._RecordConsumer-class.html#prosite_reference
Bio.Prosite.Prodoc._RecordConsumer.text	Bio.Prosite.Prodoc._RecordConsumer-class.html#text
Bio.Prosite.Prodoc._RecordConsumer._clean_data	Bio.Prosite.Prodoc._RecordConsumer-class.html#_clean_data
Bio.Prosite.Prodoc._RecordConsumer.accession	Bio.Prosite.Prodoc._RecordConsumer-class.html#accession
Bio.ParserSupport.AbstractConsumer.__getattr__	Bio.ParserSupport.AbstractConsumer-class.html#__getattr__
Bio.ParserSupport.AbstractConsumer._unhandled	Bio.ParserSupport.AbstractConsumer-class.html#_unhandled
Bio.Prosite.Prodoc._RecordConsumer.end_record	Bio.Prosite.Prodoc._RecordConsumer-class.html#end_record
Bio.ParserSupport.AbstractConsumer._unhandled_section	Bio.ParserSupport.AbstractConsumer-class.html#_unhandled_section
Bio.Prosite.Prodoc._RecordConsumer.__init__	Bio.Prosite.Prodoc._RecordConsumer-class.html#__init__
Bio.Prosite.Prodoc._Scanner	Bio.Prosite.Prodoc._Scanner-class.html
Bio.Prosite.Prodoc._Scanner.feed	Bio.Prosite.Prodoc._Scanner-class.html#feed
Bio.Prosite.Prodoc._Scanner._scan_prosite_refs	Bio.Prosite.Prodoc._Scanner-class.html#_scan_prosite_refs
Bio.Prosite.Prodoc._Scanner._scan_accession	Bio.Prosite.Prodoc._Scanner-class.html#_scan_accession
Bio.Prosite.Prodoc._Scanner._scan_refs	Bio.Prosite.Prodoc._Scanner-class.html#_scan_refs
Bio.Prosite.Prodoc._Scanner._scan_record	Bio.Prosite.Prodoc._Scanner-class.html#_scan_record
Bio.Prosite.Prodoc._Scanner._scan_text	Bio.Prosite.Prodoc._Scanner-class.html#_scan_text
Bio.Prosite.Prodoc._Scanner._scan_copyright	Bio.Prosite.Prodoc._Scanner-class.html#_scan_copyright
Bio.Prosite.Record	Bio.Prosite.Record-class.html
Bio.Prosite.Record.__init__	Bio.Prosite.Record-class.html#__init__
Bio.Prosite.RecordParser	Bio.Prosite.RecordParser-class.html
Bio.Prosite.RecordParser.parse	Bio.Prosite.RecordParser-class.html#parse
Bio.ParserSupport.AbstractParser.parse_file	Bio.ParserSupport.AbstractParser-class.html#parse_file
Bio.ParserSupport.AbstractParser.parse_str	Bio.ParserSupport.AbstractParser-class.html#parse_str
Bio.Prosite.RecordParser.__init__	Bio.Prosite.RecordParser-class.html#__init__
Bio.Prosite._RecordConsumer	Bio.Prosite._RecordConsumer-class.html
Bio.Prosite._RecordConsumer.comment	Bio.Prosite._RecordConsumer-class.html#comment
Bio.Prosite._RecordConsumer.start_record	Bio.Prosite._RecordConsumer-class.html#start_record
Bio.Prosite._RecordConsumer.accession	Bio.Prosite._RecordConsumer-class.html#accession
Bio.Prosite._RecordConsumer.terminator	Bio.Prosite._RecordConsumer-class.html#terminator
Bio.Prosite._RecordConsumer.__init__	Bio.Prosite._RecordConsumer-class.html#__init__
Bio.Prosite._RecordConsumer.matrix	Bio.Prosite._RecordConsumer-class.html#matrix
Bio.Prosite._RecordConsumer.pattern	Bio.Prosite._RecordConsumer-class.html#pattern
Bio.ParserSupport.AbstractConsumer.__getattr__	Bio.ParserSupport.AbstractConsumer-class.html#__getattr__
Bio.Prosite._RecordConsumer.identification	Bio.Prosite._RecordConsumer-class.html#identification
Bio.Prosite._RecordConsumer.numerical_results	Bio.Prosite._RecordConsumer-class.html#numerical_results
Bio.Prosite._RecordConsumer.database_reference	Bio.Prosite._RecordConsumer-class.html#database_reference
Bio.Prosite._RecordConsumer._chomp	Bio.Prosite._RecordConsumer-class.html#_chomp
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Bio.Prosite._RecordConsumer._clean	Bio.Prosite._RecordConsumer-class.html#_clean
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Bio.Prosite._RecordConsumer.date	Bio.Prosite._RecordConsumer-class.html#date
Bio.Prosite._RecordConsumer.pdb_reference	Bio.Prosite._RecordConsumer-class.html#pdb_reference
Bio.Prosite._RecordConsumer.documentation	Bio.Prosite._RecordConsumer-class.html#documentation
Bio.Prosite._RecordConsumer.rule	Bio.Prosite._RecordConsumer-class.html#rule
Bio.Prosite._RecordConsumer.prorule	Bio.Prosite._RecordConsumer-class.html#prorule
Bio.ParserSupport.AbstractConsumer._unhandled	Bio.ParserSupport.AbstractConsumer-class.html#_unhandled
Bio.Prosite._RecordConsumer.end_record	Bio.Prosite._RecordConsumer-class.html#end_record
Bio.Prosite._RecordConsumer.postprocessing	Bio.Prosite._RecordConsumer-class.html#postprocessing
Bio.Prosite._Scanner	Bio.Prosite._Scanner-class.html
Bio.Prosite._Scanner.feed	Bio.Prosite._Scanner-class.html#feed
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Bio.Prosite._Scanner._scan_3d	Bio.Prosite._Scanner-class.html#_scan_3d
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Bio.Prosite._Scanner._scan_dt	Bio.Prosite._Scanner-class.html#_scan_dt
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Bio.Prosite._Scanner._scan_ma	Bio.Prosite._Scanner-class.html#_scan_ma
Bio.Prosite._Scanner._scan_ac	Bio.Prosite._Scanner-class.html#_scan_ac
Bio.Prosite._Scanner._scan_record	Bio.Prosite._Scanner-class.html#_scan_record
Bio.Prosite._Scanner._scan_pr	Bio.Prosite._Scanner-class.html#_scan_pr
Bio.Prosite._Scanner._scan_pp	Bio.Prosite._Scanner-class.html#_scan_pp
Bio.PubMed.Dictionary	Bio.PubMed.Dictionary-class.html
Bio.PubMed.Dictionary.__getitem__	Bio.PubMed.Dictionary-class.html#__getitem__
Bio.PubMed.Dictionary.get	Bio.PubMed.Dictionary-class.html#get
Bio.PubMed.Dictionary.keys	Bio.PubMed.Dictionary-class.html#keys
Bio.PubMed.Dictionary.items	Bio.PubMed.Dictionary-class.html#items
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Bio.PubMed.Dictionary.__init__	Bio.PubMed.Dictionary-class.html#__init__
Bio.Restriction.PrintFormat.PrintFormat	Bio.Restriction.PrintFormat.PrintFormat-class.html
Bio.Restriction.PrintFormat.PrintFormat.linesize	Bio.Restriction.PrintFormat.PrintFormat-class.html#linesize
Bio.Restriction.PrintFormat.PrintFormat._make_number_only	Bio.Restriction.PrintFormat.PrintFormat-class.html#_make_number_only
Bio.Restriction.PrintFormat.PrintFormat.NameWidth	Bio.Restriction.PrintFormat.PrintFormat-class.html#NameWidth
Bio.Restriction.PrintFormat.PrintFormat._make_map_only	Bio.Restriction.PrintFormat.PrintFormat-class.html#_make_map_only
Bio.Restriction.PrintFormat.PrintFormat.PrefWidth	Bio.Restriction.PrintFormat.PrintFormat-class.html#PrefWidth
Bio.Restriction.PrintFormat.PrintFormat.__next_section	Bio.Restriction.PrintFormat.PrintFormat-class.html#__next_section
Bio.Restriction.PrintFormat.PrintFormat._make_list_only	Bio.Restriction.PrintFormat.PrintFormat-class.html#_make_list_only
Bio.Restriction.PrintFormat.PrintFormat.__init__	Bio.Restriction.PrintFormat.PrintFormat-class.html#__init__
Bio.Restriction.PrintFormat.PrintFormat._make_nocut_only	Bio.Restriction.PrintFormat.PrintFormat-class.html#_make_nocut_only
Bio.Restriction.PrintFormat.PrintFormat.ConsoleWidth	Bio.Restriction.PrintFormat.PrintFormat-class.html#ConsoleWidth
Bio.Restriction.PrintFormat.PrintFormat._make_number	Bio.Restriction.PrintFormat.PrintFormat-class.html#_make_number
Bio.Restriction.PrintFormat.PrintFormat.print_that	Bio.Restriction.PrintFormat.PrintFormat-class.html#print_that
Bio.Restriction.PrintFormat.PrintFormat.MaxSize	Bio.Restriction.PrintFormat.PrintFormat-class.html#MaxSize
Bio.Restriction.PrintFormat.PrintFormat._make_map	Bio.Restriction.PrintFormat.PrintFormat-class.html#_make_map
Bio.Restriction.PrintFormat.PrintFormat.Indent	Bio.Restriction.PrintFormat.PrintFormat-class.html#Indent
Bio.Restriction.PrintFormat.PrintFormat.Cmodulo	Bio.Restriction.PrintFormat.PrintFormat-class.html#Cmodulo
Bio.Restriction.PrintFormat.PrintFormat._make_nocut	Bio.Restriction.PrintFormat.PrintFormat-class.html#_make_nocut
Bio.Restriction.PrintFormat.PrintFormat._make_list	Bio.Restriction.PrintFormat.PrintFormat-class.html#_make_list
Bio.Restriction.PrintFormat.PrintFormat.print_as	Bio.Restriction.PrintFormat.PrintFormat-class.html#print_as
Bio.Restriction.PrintFormat.PrintFormat.make_format	Bio.Restriction.PrintFormat.PrintFormat-class.html#make_format
Bio.Restriction.Restriction.AbstractCut	Bio.Restriction.Restriction.AbstractCut-class.html
Bio.Restriction.Restriction.RestrictionType.__rtruediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rtruediv__
Bio.Restriction.Restriction.RestrictionType.__str__	Bio.Restriction.Restriction.RestrictionType-class.html#__str__
Bio.Restriction.Restriction.RestrictionType.__truediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__truediv__
Bio.Restriction.Restriction.AbstractCut.frequency	Bio.Restriction.Restriction.AbstractCut-class.html#frequency
Bio.Restriction.Restriction.RestrictionType.__rdiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rdiv__
Bio.Restriction.Restriction.RestrictionType.__lt__	Bio.Restriction.Restriction.RestrictionType-class.html#__lt__
Bio.Restriction.Restriction.AbstractCut.is_isoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_isoschizomer
Bio.Restriction.Restriction.RestrictionType.__init__	Bio.Restriction.Restriction.RestrictionType-class.html#__init__
Bio.Restriction.Restriction.RestrictionType.__rshift__	Bio.Restriction.Restriction.RestrictionType-class.html#__rshift__
Bio.Restriction.Restriction.AbstractCut.all_suppliers	Bio.Restriction.Restriction.AbstractCut-class.html#all_suppliers
Bio.Restriction.Restriction.RestrictionType.__eq__	Bio.Restriction.Restriction.RestrictionType-class.html#__eq__
Bio.Restriction.Restriction.RestrictionType.__rfloordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rfloordiv__
Bio.Restriction.Restriction.AbstractCut.is_equischizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_equischizomer
Bio.Restriction.Restriction.RestrictionType.__len__	Bio.Restriction.Restriction.RestrictionType-class.html#__len__
Bio.Restriction.Restriction.RestrictionType.__ne__	Bio.Restriction.Restriction.RestrictionType-class.html#__ne__
Bio.Restriction.Restriction.AbstractCut.neoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#neoschizomers
Bio.Restriction.Restriction.AbstractCut.isoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#isoschizomers
Bio.Restriction.Restriction.RestrictionType.__add__	Bio.Restriction.Restriction.RestrictionType-class.html#__add__
Bio.Restriction.Restriction.RestrictionType.__gt__	Bio.Restriction.Restriction.RestrictionType-class.html#__gt__
Bio.Restriction.Restriction.AbstractCut.is_neoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_neoschizomer
Bio.Restriction.Restriction.AbstractCut.search	Bio.Restriction.Restriction.AbstractCut-class.html#search
Bio.Restriction.Restriction.RestrictionType.__mod__	Bio.Restriction.Restriction.RestrictionType-class.html#__mod__
Bio.Restriction.Restriction.RestrictionType.__div__	Bio.Restriction.Restriction.RestrictionType-class.html#__div__
Bio.Restriction.Restriction.RestrictionType.__le__	Bio.Restriction.Restriction.RestrictionType-class.html#__le__
Bio.Restriction.Restriction.RestrictionType.__repr__	Bio.Restriction.Restriction.RestrictionType-class.html#__repr__
Bio.Restriction.Restriction.RestrictionType.__floordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__floordiv__
Bio.Restriction.Restriction.RestrictionType.__ge__	Bio.Restriction.Restriction.RestrictionType-class.html#__ge__
Bio.Restriction.Restriction.AbstractCut.equischizomers	Bio.Restriction.Restriction.AbstractCut-class.html#equischizomers
Bio.Restriction.Restriction.Ambiguous	Bio.Restriction.Restriction.Ambiguous-class.html
Bio.Restriction.Restriction.RestrictionType.__rtruediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rtruediv__
Bio.Restriction.Restriction.Ambiguous.is_unknown	Bio.Restriction.Restriction.Ambiguous-class.html#is_unknown
Bio.Restriction.Restriction.RestrictionType.__str__	Bio.Restriction.Restriction.RestrictionType-class.html#__str__
Bio.Restriction.Restriction.RestrictionType.__truediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__truediv__
Bio.Restriction.Restriction.AbstractCut.frequency	Bio.Restriction.Restriction.AbstractCut-class.html#frequency
Bio.Restriction.Restriction.RestrictionType.__rdiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rdiv__
Bio.Restriction.Restriction.RestrictionType.__lt__	Bio.Restriction.Restriction.RestrictionType-class.html#__lt__
Bio.Restriction.Restriction.AbstractCut.is_isoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_isoschizomer
Bio.Restriction.Restriction.Ambiguous.is_defined	Bio.Restriction.Restriction.Ambiguous-class.html#is_defined
Bio.Restriction.Restriction.RestrictionType.__init__	Bio.Restriction.Restriction.RestrictionType-class.html#__init__
Bio.Restriction.Restriction.RestrictionType.__rshift__	Bio.Restriction.Restriction.RestrictionType-class.html#__rshift__
Bio.Restriction.Restriction.AbstractCut.all_suppliers	Bio.Restriction.Restriction.AbstractCut-class.html#all_suppliers
Bio.Restriction.Restriction.RestrictionType.__eq__	Bio.Restriction.Restriction.RestrictionType-class.html#__eq__
Bio.Restriction.Restriction.RestrictionType.__rfloordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rfloordiv__
Bio.Restriction.Restriction.AbstractCut.is_equischizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_equischizomer
Bio.Restriction.Restriction.RestrictionType.__len__	Bio.Restriction.Restriction.RestrictionType-class.html#__len__
Bio.Restriction.Restriction.RestrictionType.__ne__	Bio.Restriction.Restriction.RestrictionType-class.html#__ne__
Bio.Restriction.Restriction.Ambiguous.elucidate	Bio.Restriction.Restriction.Ambiguous-class.html#elucidate
Bio.Restriction.Restriction.AbstractCut.neoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#neoschizomers
Bio.Restriction.Restriction.AbstractCut.isoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#isoschizomers
Bio.Restriction.Restriction.RestrictionType.__add__	Bio.Restriction.Restriction.RestrictionType-class.html#__add__
Bio.Restriction.Restriction.RestrictionType.__gt__	Bio.Restriction.Restriction.RestrictionType-class.html#__gt__
Bio.Restriction.Restriction.Ambiguous._drop	Bio.Restriction.Restriction.Ambiguous-class.html#_drop
Bio.Restriction.Restriction.AbstractCut.is_neoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_neoschizomer
Bio.Restriction.Restriction.AbstractCut.search	Bio.Restriction.Restriction.AbstractCut-class.html#search
Bio.Restriction.Restriction.RestrictionType.__mod__	Bio.Restriction.Restriction.RestrictionType-class.html#__mod__
Bio.Restriction.Restriction.Ambiguous.is_ambiguous	Bio.Restriction.Restriction.Ambiguous-class.html#is_ambiguous
Bio.Restriction.Restriction.RestrictionType.__div__	Bio.Restriction.Restriction.RestrictionType-class.html#__div__
Bio.Restriction.Restriction.RestrictionType.__le__	Bio.Restriction.Restriction.RestrictionType-class.html#__le__
Bio.Restriction.Restriction.RestrictionType.__repr__	Bio.Restriction.Restriction.RestrictionType-class.html#__repr__
Bio.Restriction.Restriction.RestrictionType.__floordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__floordiv__
Bio.Restriction.Restriction.Ambiguous._mod2	Bio.Restriction.Restriction.Ambiguous-class.html#_mod2
Bio.Restriction.Restriction.RestrictionType.__ge__	Bio.Restriction.Restriction.RestrictionType-class.html#__ge__
Bio.Restriction.Restriction.AbstractCut.equischizomers	Bio.Restriction.Restriction.AbstractCut-class.html#equischizomers
Bio.Restriction.Restriction.Analysis	Bio.Restriction.Restriction.Analysis-class.html
Bio.Restriction.Restriction.RestrictionBatch.__str__	Bio.Restriction.Restriction.RestrictionBatch-class.html#__str__
Bio.Restriction.PrintFormat.PrintFormat._make_number_only	Bio.Restriction.PrintFormat.PrintFormat-class.html#_make_number_only
Bio.Restriction.PrintFormat.PrintFormat.NameWidth	Bio.Restriction.PrintFormat.PrintFormat-class.html#NameWidth
Bio.Restriction.Restriction.RestrictionBatch.lambdasplit	Bio.Restriction.Restriction.RestrictionBatch-class.html#lambdasplit
Bio.Restriction.Restriction.Analysis._sub_set	Bio.Restriction.Restriction.Analysis-class.html#_sub_set
Bio.Restriction.Restriction.RestrictionBatch.show_codes	Bio.Restriction.Restriction.RestrictionBatch-class.html#show_codes
Bio.Restriction.Restriction.RestrictionBatch.__rdiv__	Bio.Restriction.Restriction.RestrictionBatch-class.html#__rdiv__
Bio.Restriction.PrintFormat.PrintFormat._make_nocut_only	Bio.Restriction.PrintFormat.PrintFormat-class.html#_make_nocut_only
Bio.Restriction.Restriction.Analysis.do_not_cut	Bio.Restriction.Restriction.Analysis-class.html#do_not_cut
Bio.Restriction.Restriction.RestrictionBatch.add	Bio.Restriction.Restriction.RestrictionBatch-class.html#add
Bio.Restriction.PrintFormat.PrintFormat._make_map	Bio.Restriction.PrintFormat.PrintFormat-class.html#_make_map
Bio.Restriction.PrintFormat.PrintFormat.Indent	Bio.Restriction.PrintFormat.PrintFormat-class.html#Indent
Bio.Restriction.Restriction.RestrictionBatch.get	Bio.Restriction.Restriction.RestrictionBatch-class.html#get
Bio.Restriction.Restriction.RestrictionBatch.add_supplier	Bio.Restriction.Restriction.RestrictionBatch-class.html#add_supplier
Bio.Restriction.Restriction.RestrictionBatch.remove	Bio.Restriction.Restriction.RestrictionBatch-class.html#remove
Bio.Restriction.Restriction.Analysis._test_reverse	Bio.Restriction.Restriction.Analysis-class.html#_test_reverse
Bio.Restriction.PrintFormat.PrintFormat.linesize	Bio.Restriction.PrintFormat.PrintFormat-class.html#linesize
Bio.Restriction.PrintFormat.PrintFormat.PrefWidth	Bio.Restriction.PrintFormat.PrintFormat-class.html#PrefWidth
Bio.Restriction.Restriction.RestrictionBatch.__contains__	Bio.Restriction.Restriction.RestrictionBatch-class.html#__contains__
Bio.Restriction.Restriction.Analysis.only_between	Bio.Restriction.Restriction.Analysis-class.html#only_between
Bio.Restriction.Restriction.Analysis.outside	Bio.Restriction.Restriction.Analysis-class.html#outside
Bio.Restriction.PrintFormat.PrintFormat.make_format	Bio.Restriction.PrintFormat.PrintFormat-class.html#make_format
Bio.Restriction.Restriction.Analysis.with_N_sites	Bio.Restriction.Restriction.Analysis-class.html#with_N_sites
Bio.Restriction.Restriction.Analysis.between	Bio.Restriction.Restriction.Analysis-class.html#between
Bio.Restriction.Restriction.Analysis.full	Bio.Restriction.Restriction.Analysis-class.html#full
Bio.Restriction.Restriction.RestrictionBatch.current_suppliers	Bio.Restriction.Restriction.RestrictionBatch-class.html#current_suppliers
Bio.Restriction.Restriction.RestrictionBatch.suppl_codes	Bio.Restriction.Restriction.RestrictionBatch-class.html#suppl_codes
Bio.Restriction.Restriction.Analysis.change	Bio.Restriction.Restriction.Analysis-class.html#change
Bio.Restriction.Restriction.RestrictionBatch.search	Bio.Restriction.Restriction.RestrictionBatch-class.html#search
Bio.Restriction.Restriction.Analysis.with_number_list	Bio.Restriction.Restriction.Analysis-class.html#with_number_list
Bio.Restriction.PrintFormat.PrintFormat._make_list	Bio.Restriction.PrintFormat.PrintFormat-class.html#_make_list
Bio.Restriction.Restriction.RestrictionBatch.add_nocheck	Bio.Restriction.Restriction.RestrictionBatch-class.html#add_nocheck
Bio.Restriction.Restriction.Analysis.__repr__	Bio.Restriction.Restriction.Analysis-class.html#__repr__
Bio.Restriction.Restriction.Analysis.overhang3	Bio.Restriction.Restriction.Analysis-class.html#overhang3
Bio.Restriction.Restriction.Analysis._test_normal	Bio.Restriction.Restriction.Analysis-class.html#_test_normal
Bio.Restriction.Restriction.Analysis.overhang5	Bio.Restriction.Restriction.Analysis-class.html#overhang5
Bio.Restriction.Restriction.Analysis._boundaries	Bio.Restriction.Restriction.Analysis-class.html#_boundaries
Bio.Restriction.PrintFormat.PrintFormat.ConsoleWidth	Bio.Restriction.PrintFormat.PrintFormat-class.html#ConsoleWidth
Bio.Restriction.Restriction.Analysis.only_outside	Bio.Restriction.Restriction.Analysis-class.html#only_outside
Bio.Restriction.PrintFormat.PrintFormat._make_nocut	Bio.Restriction.PrintFormat.PrintFormat-class.html#_make_nocut
Bio.Restriction.Restriction.RestrictionBatch.__iadd__	Bio.Restriction.Restriction.RestrictionBatch-class.html#__iadd__
Bio.Restriction.Restriction.Analysis.defined	Bio.Restriction.Restriction.Analysis-class.html#defined
Bio.Restriction.Restriction.RestrictionBatch.as_string	Bio.Restriction.Restriction.RestrictionBatch-class.html#as_string
Bio.Restriction.Restriction.Analysis.without_site	Bio.Restriction.Restriction.Analysis-class.html#without_site
Bio.Restriction.Restriction.Analysis.with_name	Bio.Restriction.Restriction.Analysis-class.html#with_name
Bio.Restriction.PrintFormat.PrintFormat._make_map_only	Bio.Restriction.PrintFormat.PrintFormat-class.html#_make_map_only
Bio.Restriction.PrintFormat.PrintFormat._make_list_only	Bio.Restriction.PrintFormat.PrintFormat-class.html#_make_list_only
Bio.Restriction.Restriction.Analysis.__init__	Bio.Restriction.Restriction.Analysis-class.html#__init__
Bio.Restriction.Restriction.RestrictionBatch.format	Bio.Restriction.Restriction.RestrictionBatch-class.html#format
Bio.Restriction.PrintFormat.PrintFormat._make_number	Bio.Restriction.PrintFormat.PrintFormat-class.html#_make_number
Bio.Restriction.Restriction.Analysis.print_that	Bio.Restriction.Restriction.Analysis-class.html#print_that
Bio.Restriction.PrintFormat.PrintFormat.MaxSize	Bio.Restriction.PrintFormat.PrintFormat-class.html#MaxSize
Bio.Restriction.Restriction.RestrictionBatch.split	Bio.Restriction.Restriction.RestrictionBatch-class.html#split
Bio.Restriction.Restriction.Analysis.blunt	Bio.Restriction.Restriction.Analysis-class.html#blunt
Bio.Restriction.Restriction.RestrictionBatch.elements	Bio.Restriction.Restriction.RestrictionBatch-class.html#elements
Bio.Restriction.PrintFormat.PrintFormat.Cmodulo	Bio.Restriction.PrintFormat.PrintFormat-class.html#Cmodulo
Bio.Restriction.Restriction.RestrictionBatch.__add__	Bio.Restriction.Restriction.RestrictionBatch-class.html#__add__
Bio.Restriction.Restriction.Analysis.show_only_between	Bio.Restriction.Restriction.Analysis-class.html#show_only_between
Bio.Restriction.Restriction.Analysis.with_site_size	Bio.Restriction.Restriction.Analysis-class.html#with_site_size
Bio.Restriction.PrintFormat.PrintFormat.print_as	Bio.Restriction.PrintFormat.PrintFormat-class.html#print_as
Bio.Restriction.Restriction.RestrictionBatch.is_restriction	Bio.Restriction.Restriction.RestrictionBatch-class.html#is_restriction
Bio.Restriction.Restriction.RestrictionBatch.__div__	Bio.Restriction.Restriction.RestrictionBatch-class.html#__div__
Bio.Restriction.Restriction.Analysis.with_sites	Bio.Restriction.Restriction.Analysis-class.html#with_sites
Bio.Restriction.Restriction.Blunt	Bio.Restriction.Restriction.Blunt-class.html
Bio.Restriction.Restriction.RestrictionType.__rtruediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rtruediv__
Bio.Restriction.Restriction.RestrictionType.__str__	Bio.Restriction.Restriction.RestrictionType-class.html#__str__
Bio.Restriction.Restriction.Blunt.compatible_end	Bio.Restriction.Restriction.Blunt-class.html#compatible_end
Bio.Restriction.Restriction.Blunt.is_blunt	Bio.Restriction.Restriction.Blunt-class.html#is_blunt
Bio.Restriction.Restriction.RestrictionType.__truediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__truediv__
Bio.Restriction.Restriction.Blunt.catalyze	Bio.Restriction.Restriction.Blunt-class.html#catalyze
Bio.Restriction.Restriction.RestrictionType.__rdiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rdiv__
Bio.Restriction.Restriction.RestrictionType.__lt__	Bio.Restriction.Restriction.RestrictionType-class.html#__lt__
Bio.Restriction.Restriction.AbstractCut.is_isoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_isoschizomer
Bio.Restriction.Restriction.RestrictionType.__init__	Bio.Restriction.Restriction.RestrictionType-class.html#__init__
Bio.Restriction.Restriction.RestrictionType.__rshift__	Bio.Restriction.Restriction.RestrictionType-class.html#__rshift__
Bio.Restriction.Restriction.AbstractCut.all_suppliers	Bio.Restriction.Restriction.AbstractCut-class.html#all_suppliers
Bio.Restriction.Restriction.Blunt.is_3overhang	Bio.Restriction.Restriction.Blunt-class.html#is_3overhang
Bio.Restriction.Restriction.RestrictionType.__eq__	Bio.Restriction.Restriction.RestrictionType-class.html#__eq__
Bio.Restriction.Restriction.RestrictionType.__le__	Bio.Restriction.Restriction.RestrictionType-class.html#__le__
Bio.Restriction.Restriction.RestrictionType.__rfloordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rfloordiv__
Bio.Restriction.Restriction.AbstractCut.is_equischizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_equischizomer
Bio.Restriction.Restriction.Blunt.overhang	Bio.Restriction.Restriction.Blunt-class.html#overhang
Bio.Restriction.Restriction.RestrictionType.__repr__	Bio.Restriction.Restriction.RestrictionType-class.html#__repr__
Bio.Restriction.Restriction.RestrictionType.__ne__	Bio.Restriction.Restriction.RestrictionType-class.html#__ne__
Bio.Restriction.Restriction.Blunt.catalyse	Bio.Restriction.Restriction.Blunt-class.html#catalyse
Bio.Restriction.Restriction.AbstractCut.neoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#neoschizomers
Bio.Restriction.Restriction.AbstractCut.isoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#isoschizomers
Bio.Restriction.Restriction.RestrictionType.__add__	Bio.Restriction.Restriction.RestrictionType-class.html#__add__
Bio.Restriction.Restriction.RestrictionType.__gt__	Bio.Restriction.Restriction.RestrictionType-class.html#__gt__
Bio.Restriction.Restriction.Blunt.is_5overhang	Bio.Restriction.Restriction.Blunt-class.html#is_5overhang
Bio.Restriction.Restriction.AbstractCut.is_neoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_neoschizomer
Bio.Restriction.Restriction.AbstractCut.search	Bio.Restriction.Restriction.AbstractCut-class.html#search
Bio.Restriction.Restriction.RestrictionType.__mod__	Bio.Restriction.Restriction.RestrictionType-class.html#__mod__
Bio.Restriction.Restriction.RestrictionType.__div__	Bio.Restriction.Restriction.RestrictionType-class.html#__div__
Bio.Restriction.Restriction.AbstractCut.frequency	Bio.Restriction.Restriction.AbstractCut-class.html#frequency
Bio.Restriction.Restriction.RestrictionType.__len__	Bio.Restriction.Restriction.RestrictionType-class.html#__len__
Bio.Restriction.Restriction.RestrictionType.__floordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__floordiv__
Bio.Restriction.Restriction.Blunt._mod1	Bio.Restriction.Restriction.Blunt-class.html#_mod1
Bio.Restriction.Restriction.RestrictionType.__ge__	Bio.Restriction.Restriction.RestrictionType-class.html#__ge__
Bio.Restriction.Restriction.AbstractCut.equischizomers	Bio.Restriction.Restriction.AbstractCut-class.html#equischizomers
Bio.Restriction.Restriction.Commercially_available	Bio.Restriction.Restriction.Commercially_available-class.html
Bio.Restriction.Restriction.RestrictionType.__rtruediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rtruediv__
Bio.Restriction.Restriction.RestrictionType.__str__	Bio.Restriction.Restriction.RestrictionType-class.html#__str__
Bio.Restriction.Restriction.RestrictionType.__truediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__truediv__
Bio.Restriction.Restriction.AbstractCut.frequency	Bio.Restriction.Restriction.AbstractCut-class.html#frequency
Bio.Restriction.Restriction.RestrictionType.__rdiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rdiv__
Bio.Restriction.Restriction.RestrictionType.__lt__	Bio.Restriction.Restriction.RestrictionType-class.html#__lt__
Bio.Restriction.Restriction.AbstractCut.is_isoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_isoschizomer
Bio.Restriction.Restriction.Commercially_available.buffers	Bio.Restriction.Restriction.Commercially_available-class.html#buffers
Bio.Restriction.Restriction.RestrictionType.__rshift__	Bio.Restriction.Restriction.RestrictionType-class.html#__rshift__
Bio.Restriction.Restriction.AbstractCut.all_suppliers	Bio.Restriction.Restriction.AbstractCut-class.html#all_suppliers
Bio.Restriction.Restriction.RestrictionType.__eq__	Bio.Restriction.Restriction.RestrictionType-class.html#__eq__
Bio.Restriction.Restriction.RestrictionType.__rfloordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rfloordiv__
Bio.Restriction.Restriction.RestrictionType.__init__	Bio.Restriction.Restriction.RestrictionType-class.html#__init__
Bio.Restriction.Restriction.AbstractCut.is_equischizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_equischizomer
Bio.Restriction.Restriction.RestrictionType.__len__	Bio.Restriction.Restriction.RestrictionType-class.html#__len__
Bio.Restriction.Restriction.RestrictionType.__ne__	Bio.Restriction.Restriction.RestrictionType-class.html#__ne__
Bio.Restriction.Restriction.AbstractCut.neoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#neoschizomers
Bio.Restriction.Restriction.AbstractCut.isoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#isoschizomers
Bio.Restriction.Restriction.RestrictionType.__add__	Bio.Restriction.Restriction.RestrictionType-class.html#__add__
Bio.Restriction.Restriction.RestrictionType.__gt__	Bio.Restriction.Restriction.RestrictionType-class.html#__gt__
Bio.Restriction.Restriction.AbstractCut.is_neoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_neoschizomer
Bio.Restriction.Restriction.Commercially_available.supplier_list	Bio.Restriction.Restriction.Commercially_available-class.html#supplier_list
Bio.Restriction.Restriction.AbstractCut.search	Bio.Restriction.Restriction.AbstractCut-class.html#search
Bio.Restriction.Restriction.RestrictionType.__mod__	Bio.Restriction.Restriction.RestrictionType-class.html#__mod__
Bio.Restriction.Restriction.Commercially_available.suppliers	Bio.Restriction.Restriction.Commercially_available-class.html#suppliers
Bio.Restriction.Restriction.RestrictionType.__div__	Bio.Restriction.Restriction.RestrictionType-class.html#__div__
Bio.Restriction.Restriction.RestrictionType.__le__	Bio.Restriction.Restriction.RestrictionType-class.html#__le__
Bio.Restriction.Restriction.Commercially_available.is_comm	Bio.Restriction.Restriction.Commercially_available-class.html#is_comm
Bio.Restriction.Restriction.RestrictionType.__repr__	Bio.Restriction.Restriction.RestrictionType-class.html#__repr__
Bio.Restriction.Restriction.RestrictionType.__floordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__floordiv__
Bio.Restriction.Restriction.RestrictionType.__ge__	Bio.Restriction.Restriction.RestrictionType-class.html#__ge__
Bio.Restriction.Restriction.AbstractCut.equischizomers	Bio.Restriction.Restriction.AbstractCut-class.html#equischizomers
Bio.Restriction.Restriction.Defined	Bio.Restriction.Restriction.Defined-class.html
Bio.Restriction.Restriction.RestrictionType.__rtruediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rtruediv__
Bio.Restriction.Restriction.Defined.is_unknown	Bio.Restriction.Restriction.Defined-class.html#is_unknown
Bio.Restriction.Restriction.RestrictionType.__str__	Bio.Restriction.Restriction.RestrictionType-class.html#__str__
Bio.Restriction.Restriction.RestrictionType.__truediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__truediv__
Bio.Restriction.Restriction.AbstractCut.frequency	Bio.Restriction.Restriction.AbstractCut-class.html#frequency
Bio.Restriction.Restriction.RestrictionType.__rdiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rdiv__
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Bio.Restriction.Restriction.AbstractCut.is_isoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_isoschizomer
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Bio.Restriction.Restriction.RestrictionType.__init__	Bio.Restriction.Restriction.RestrictionType-class.html#__init__
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Bio.Restriction.Restriction.AbstractCut.all_suppliers	Bio.Restriction.Restriction.AbstractCut-class.html#all_suppliers
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Bio.Restriction.Restriction.RestrictionType.__ne__	Bio.Restriction.Restriction.RestrictionType-class.html#__ne__
Bio.Restriction.Restriction.Defined.elucidate	Bio.Restriction.Restriction.Defined-class.html#elucidate
Bio.Restriction.Restriction.AbstractCut.neoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#neoschizomers
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Bio.Restriction.Restriction.RestrictionType.__add__	Bio.Restriction.Restriction.RestrictionType-class.html#__add__
Bio.Restriction.Restriction.RestrictionType.__gt__	Bio.Restriction.Restriction.RestrictionType-class.html#__gt__
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Bio.Restriction.Restriction.RestrictionType.__mod__	Bio.Restriction.Restriction.RestrictionType-class.html#__mod__
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Bio.Restriction.Restriction.RestrictionType.__div__	Bio.Restriction.Restriction.RestrictionType-class.html#__div__
Bio.Restriction.Restriction.RestrictionType.__le__	Bio.Restriction.Restriction.RestrictionType-class.html#__le__
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Bio.Restriction.Restriction.RestrictionType.__ge__	Bio.Restriction.Restriction.RestrictionType-class.html#__ge__
Bio.Restriction.Restriction.AbstractCut.equischizomers	Bio.Restriction.Restriction.AbstractCut-class.html#equischizomers
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Bio.Restriction.Restriction.FormattedSeq.finditer	Bio.Restriction.Restriction.FormattedSeq-class.html#finditer
Bio.Restriction.Restriction.FormattedSeq.is_linear	Bio.Restriction.Restriction.FormattedSeq-class.html#is_linear
Bio.Restriction.Restriction.FormattedSeq.__init__	Bio.Restriction.Restriction.FormattedSeq-class.html#__init__
Bio.Restriction.Restriction.FormattedSeq.circularise	Bio.Restriction.Restriction.FormattedSeq-class.html#circularise
Bio.Restriction.Restriction.FormattedSeq.__len__	Bio.Restriction.Restriction.FormattedSeq-class.html#__len__
Bio.Restriction.Restriction.FormattedSeq.__getitem__	Bio.Restriction.Restriction.FormattedSeq-class.html#__getitem__
Bio.Restriction.Restriction.FormattedSeq.to_linear	Bio.Restriction.Restriction.FormattedSeq-class.html#to_linear
Bio.Restriction.Restriction.FormattedSeq.linearise	Bio.Restriction.Restriction.FormattedSeq-class.html#linearise
Bio.Restriction.Restriction.FormattedSeq.__eq__	Bio.Restriction.Restriction.FormattedSeq-class.html#__eq__
Bio.Restriction.Restriction.FormattedSeq.to_circular	Bio.Restriction.Restriction.FormattedSeq-class.html#to_circular
Bio.Restriction.Restriction.FormattedSeq.__repr__	Bio.Restriction.Restriction.FormattedSeq-class.html#__repr__
Bio.Restriction.Restriction.Meth_Dep	Bio.Restriction.Restriction.Meth_Dep-class.html
Bio.Restriction.Restriction.Meth_Dep.is_methylable	Bio.Restriction.Restriction.Meth_Dep-class.html#is_methylable
Bio.Restriction.Restriction.RestrictionType.__str__	Bio.Restriction.Restriction.RestrictionType-class.html#__str__
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Bio.Restriction.Restriction.AbstractCut.frequency	Bio.Restriction.Restriction.AbstractCut-class.html#frequency
Bio.Restriction.Restriction.RestrictionType.__rdiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rdiv__
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Bio.Restriction.Restriction.AbstractCut.is_isoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_isoschizomer
Bio.Restriction.Restriction.RestrictionType.__init__	Bio.Restriction.Restriction.RestrictionType-class.html#__init__
Bio.Restriction.Restriction.RestrictionType.__rshift__	Bio.Restriction.Restriction.RestrictionType-class.html#__rshift__
Bio.Restriction.Restriction.AbstractCut.all_suppliers	Bio.Restriction.Restriction.AbstractCut-class.html#all_suppliers
Bio.Restriction.Restriction.RestrictionType.__eq__	Bio.Restriction.Restriction.RestrictionType-class.html#__eq__
Bio.Restriction.Restriction.RestrictionType.__rfloordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rfloordiv__
Bio.Restriction.Restriction.AbstractCut.is_equischizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_equischizomer
Bio.Restriction.Restriction.RestrictionType.__len__	Bio.Restriction.Restriction.RestrictionType-class.html#__len__
Bio.Restriction.Restriction.RestrictionType.__ne__	Bio.Restriction.Restriction.RestrictionType-class.html#__ne__
Bio.Restriction.Restriction.AbstractCut.neoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#neoschizomers
Bio.Restriction.Restriction.AbstractCut.isoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#isoschizomers
Bio.Restriction.Restriction.RestrictionType.__add__	Bio.Restriction.Restriction.RestrictionType-class.html#__add__
Bio.Restriction.Restriction.RestrictionType.__gt__	Bio.Restriction.Restriction.RestrictionType-class.html#__gt__
Bio.Restriction.Restriction.AbstractCut.is_neoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_neoschizomer
Bio.Restriction.Restriction.AbstractCut.search	Bio.Restriction.Restriction.AbstractCut-class.html#search
Bio.Restriction.Restriction.RestrictionType.__mod__	Bio.Restriction.Restriction.RestrictionType-class.html#__mod__
Bio.Restriction.Restriction.RestrictionType.__div__	Bio.Restriction.Restriction.RestrictionType-class.html#__div__
Bio.Restriction.Restriction.RestrictionType.__le__	Bio.Restriction.Restriction.RestrictionType-class.html#__le__
Bio.Restriction.Restriction.RestrictionType.__repr__	Bio.Restriction.Restriction.RestrictionType-class.html#__repr__
Bio.Restriction.Restriction.RestrictionType.__floordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__floordiv__
Bio.Restriction.Restriction.RestrictionType.__ge__	Bio.Restriction.Restriction.RestrictionType-class.html#__ge__
Bio.Restriction.Restriction.AbstractCut.equischizomers	Bio.Restriction.Restriction.AbstractCut-class.html#equischizomers
Bio.Restriction.Restriction.Meth_Undep	Bio.Restriction.Restriction.Meth_Undep-class.html
Bio.Restriction.Restriction.Meth_Undep.is_methylable	Bio.Restriction.Restriction.Meth_Undep-class.html#is_methylable
Bio.Restriction.Restriction.RestrictionType.__str__	Bio.Restriction.Restriction.RestrictionType-class.html#__str__
Bio.Restriction.Restriction.RestrictionType.__truediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__truediv__
Bio.Restriction.Restriction.RestrictionType.__rtruediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rtruediv__
Bio.Restriction.Restriction.AbstractCut.frequency	Bio.Restriction.Restriction.AbstractCut-class.html#frequency
Bio.Restriction.Restriction.RestrictionType.__rdiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rdiv__
Bio.Restriction.Restriction.RestrictionType.__lt__	Bio.Restriction.Restriction.RestrictionType-class.html#__lt__
Bio.Restriction.Restriction.AbstractCut.is_isoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_isoschizomer
Bio.Restriction.Restriction.RestrictionType.__init__	Bio.Restriction.Restriction.RestrictionType-class.html#__init__
Bio.Restriction.Restriction.RestrictionType.__rshift__	Bio.Restriction.Restriction.RestrictionType-class.html#__rshift__
Bio.Restriction.Restriction.AbstractCut.all_suppliers	Bio.Restriction.Restriction.AbstractCut-class.html#all_suppliers
Bio.Restriction.Restriction.RestrictionType.__eq__	Bio.Restriction.Restriction.RestrictionType-class.html#__eq__
Bio.Restriction.Restriction.RestrictionType.__rfloordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rfloordiv__
Bio.Restriction.Restriction.AbstractCut.is_equischizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_equischizomer
Bio.Restriction.Restriction.RestrictionType.__len__	Bio.Restriction.Restriction.RestrictionType-class.html#__len__
Bio.Restriction.Restriction.RestrictionType.__ne__	Bio.Restriction.Restriction.RestrictionType-class.html#__ne__
Bio.Restriction.Restriction.AbstractCut.neoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#neoschizomers
Bio.Restriction.Restriction.AbstractCut.isoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#isoschizomers
Bio.Restriction.Restriction.RestrictionType.__add__	Bio.Restriction.Restriction.RestrictionType-class.html#__add__
Bio.Restriction.Restriction.RestrictionType.__gt__	Bio.Restriction.Restriction.RestrictionType-class.html#__gt__
Bio.Restriction.Restriction.AbstractCut.is_neoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_neoschizomer
Bio.Restriction.Restriction.AbstractCut.search	Bio.Restriction.Restriction.AbstractCut-class.html#search
Bio.Restriction.Restriction.RestrictionType.__mod__	Bio.Restriction.Restriction.RestrictionType-class.html#__mod__
Bio.Restriction.Restriction.RestrictionType.__div__	Bio.Restriction.Restriction.RestrictionType-class.html#__div__
Bio.Restriction.Restriction.RestrictionType.__le__	Bio.Restriction.Restriction.RestrictionType-class.html#__le__
Bio.Restriction.Restriction.RestrictionType.__repr__	Bio.Restriction.Restriction.RestrictionType-class.html#__repr__
Bio.Restriction.Restriction.RestrictionType.__floordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__floordiv__
Bio.Restriction.Restriction.RestrictionType.__ge__	Bio.Restriction.Restriction.RestrictionType-class.html#__ge__
Bio.Restriction.Restriction.AbstractCut.equischizomers	Bio.Restriction.Restriction.AbstractCut-class.html#equischizomers
Bio.Restriction.Restriction.NoCut	Bio.Restriction.Restriction.NoCut-class.html
Bio.Restriction.Restriction.RestrictionType.__rtruediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rtruediv__
Bio.Restriction.Restriction.RestrictionType.__str__	Bio.Restriction.Restriction.RestrictionType-class.html#__str__
Bio.Restriction.Restriction.RestrictionType.__truediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__truediv__
Bio.Restriction.Restriction.AbstractCut.frequency	Bio.Restriction.Restriction.AbstractCut-class.html#frequency
Bio.Restriction.Restriction.RestrictionType.__rdiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rdiv__
Bio.Restriction.Restriction.RestrictionType.__lt__	Bio.Restriction.Restriction.RestrictionType-class.html#__lt__
Bio.Restriction.Restriction.AbstractCut.is_isoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_isoschizomer
Bio.Restriction.Restriction.RestrictionType.__init__	Bio.Restriction.Restriction.RestrictionType-class.html#__init__
Bio.Restriction.Restriction.RestrictionType.__rshift__	Bio.Restriction.Restriction.RestrictionType-class.html#__rshift__
Bio.Restriction.Restriction.AbstractCut.all_suppliers	Bio.Restriction.Restriction.AbstractCut-class.html#all_suppliers
Bio.Restriction.Restriction.RestrictionType.__eq__	Bio.Restriction.Restriction.RestrictionType-class.html#__eq__
Bio.Restriction.Restriction.RestrictionType.__rfloordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rfloordiv__
Bio.Restriction.Restriction.AbstractCut.is_equischizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_equischizomer
Bio.Restriction.Restriction.RestrictionType.__len__	Bio.Restriction.Restriction.RestrictionType-class.html#__len__
Bio.Restriction.Restriction.NoCut.cut_twice	Bio.Restriction.Restriction.NoCut-class.html#cut_twice
Bio.Restriction.Restriction.RestrictionType.__ne__	Bio.Restriction.Restriction.RestrictionType-class.html#__ne__
Bio.Restriction.Restriction.RestrictionType.__ge__	Bio.Restriction.Restriction.RestrictionType-class.html#__ge__
Bio.Restriction.Restriction.AbstractCut.neoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#neoschizomers
Bio.Restriction.Restriction.AbstractCut.isoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#isoschizomers
Bio.Restriction.Restriction.NoCut._rev_modify	Bio.Restriction.Restriction.NoCut-class.html#_rev_modify
Bio.Restriction.Restriction.RestrictionType.__add__	Bio.Restriction.Restriction.RestrictionType-class.html#__add__
Bio.Restriction.Restriction.RestrictionType.__gt__	Bio.Restriction.Restriction.RestrictionType-class.html#__gt__
Bio.Restriction.Restriction.AbstractCut.is_neoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_neoschizomer
Bio.Restriction.Restriction.AbstractCut.search	Bio.Restriction.Restriction.AbstractCut-class.html#search
Bio.Restriction.Restriction.RestrictionType.__mod__	Bio.Restriction.Restriction.RestrictionType-class.html#__mod__
Bio.Restriction.Restriction.NoCut.characteristic	Bio.Restriction.Restriction.NoCut-class.html#characteristic
Bio.Restriction.Restriction.NoCut.cut_once	Bio.Restriction.Restriction.NoCut-class.html#cut_once
Bio.Restriction.Restriction.RestrictionType.__div__	Bio.Restriction.Restriction.RestrictionType-class.html#__div__
Bio.Restriction.Restriction.RestrictionType.__le__	Bio.Restriction.Restriction.RestrictionType-class.html#__le__
Bio.Restriction.Restriction.RestrictionType.__repr__	Bio.Restriction.Restriction.RestrictionType-class.html#__repr__
Bio.Restriction.Restriction.RestrictionType.__floordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__floordiv__
Bio.Restriction.Restriction.NoCut._modify	Bio.Restriction.Restriction.NoCut-class.html#_modify
Bio.Restriction.Restriction.AbstractCut.equischizomers	Bio.Restriction.Restriction.AbstractCut-class.html#equischizomers
Bio.Restriction.Restriction.NonPalindromic	Bio.Restriction.Restriction.NonPalindromic-class.html
Bio.Restriction.Restriction.RestrictionType.__rtruediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rtruediv__
Bio.Restriction.Restriction.RestrictionType.__str__	Bio.Restriction.Restriction.RestrictionType-class.html#__str__
Bio.Restriction.Restriction.RestrictionType.__truediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__truediv__
Bio.Restriction.Restriction.AbstractCut.frequency	Bio.Restriction.Restriction.AbstractCut-class.html#frequency
Bio.Restriction.Restriction.RestrictionType.__rdiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rdiv__
Bio.Restriction.Restriction.RestrictionType.__lt__	Bio.Restriction.Restriction.RestrictionType-class.html#__lt__
Bio.Restriction.Restriction.AbstractCut.is_isoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_isoschizomer
Bio.Restriction.Restriction.RestrictionType.__init__	Bio.Restriction.Restriction.RestrictionType-class.html#__init__
Bio.Restriction.Restriction.RestrictionType.__rshift__	Bio.Restriction.Restriction.RestrictionType-class.html#__rshift__
Bio.Restriction.Restriction.AbstractCut.all_suppliers	Bio.Restriction.Restriction.AbstractCut-class.html#all_suppliers
Bio.Restriction.Restriction.RestrictionType.__eq__	Bio.Restriction.Restriction.RestrictionType-class.html#__eq__
Bio.Restriction.Restriction.RestrictionType.__rfloordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rfloordiv__
Bio.Restriction.Restriction.AbstractCut.is_equischizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_equischizomer
Bio.Restriction.Restriction.RestrictionType.__len__	Bio.Restriction.Restriction.RestrictionType-class.html#__len__
Bio.Restriction.Restriction.RestrictionType.__ne__	Bio.Restriction.Restriction.RestrictionType-class.html#__ne__
Bio.Restriction.Restriction.AbstractCut.neoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#neoschizomers
Bio.Restriction.Restriction.AbstractCut.isoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#isoschizomers
Bio.Restriction.Restriction.RestrictionType.__add__	Bio.Restriction.Restriction.RestrictionType-class.html#__add__
Bio.Restriction.Restriction.RestrictionType.__gt__	Bio.Restriction.Restriction.RestrictionType-class.html#__gt__
Bio.Restriction.Restriction.AbstractCut.is_neoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_neoschizomer
Bio.Restriction.Restriction.AbstractCut.search	Bio.Restriction.Restriction.AbstractCut-class.html#search
Bio.Restriction.Restriction.RestrictionType.__mod__	Bio.Restriction.Restriction.RestrictionType-class.html#__mod__
Bio.Restriction.Restriction.NonPalindromic._search	Bio.Restriction.Restriction.NonPalindromic-class.html#_search
Bio.Restriction.Restriction.RestrictionType.__div__	Bio.Restriction.Restriction.RestrictionType-class.html#__div__
Bio.Restriction.Restriction.RestrictionType.__le__	Bio.Restriction.Restriction.RestrictionType-class.html#__le__
Bio.Restriction.Restriction.NonPalindromic.is_palindromic	Bio.Restriction.Restriction.NonPalindromic-class.html#is_palindromic
Bio.Restriction.Restriction.RestrictionType.__repr__	Bio.Restriction.Restriction.RestrictionType-class.html#__repr__
Bio.Restriction.Restriction.RestrictionType.__floordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__floordiv__
Bio.Restriction.Restriction.RestrictionType.__ge__	Bio.Restriction.Restriction.RestrictionType-class.html#__ge__
Bio.Restriction.Restriction.AbstractCut.equischizomers	Bio.Restriction.Restriction.AbstractCut-class.html#equischizomers
Bio.Restriction.Restriction.NotDefined	Bio.Restriction.Restriction.NotDefined-class.html
Bio.Restriction.Restriction.RestrictionType.__rtruediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rtruediv__
Bio.Restriction.Restriction.NotDefined.is_unknown	Bio.Restriction.Restriction.NotDefined-class.html#is_unknown
Bio.Restriction.Restriction.RestrictionType.__str__	Bio.Restriction.Restriction.RestrictionType-class.html#__str__
Bio.Restriction.Restriction.RestrictionType.__truediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__truediv__
Bio.Restriction.Restriction.AbstractCut.frequency	Bio.Restriction.Restriction.AbstractCut-class.html#frequency
Bio.Restriction.Restriction.RestrictionType.__rdiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rdiv__
Bio.Restriction.Restriction.RestrictionType.__lt__	Bio.Restriction.Restriction.RestrictionType-class.html#__lt__
Bio.Restriction.Restriction.AbstractCut.is_isoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_isoschizomer
Bio.Restriction.Restriction.NotDefined.is_defined	Bio.Restriction.Restriction.NotDefined-class.html#is_defined
Bio.Restriction.Restriction.RestrictionType.__init__	Bio.Restriction.Restriction.RestrictionType-class.html#__init__
Bio.Restriction.Restriction.RestrictionType.__rshift__	Bio.Restriction.Restriction.RestrictionType-class.html#__rshift__
Bio.Restriction.Restriction.AbstractCut.all_suppliers	Bio.Restriction.Restriction.AbstractCut-class.html#all_suppliers
Bio.Restriction.Restriction.RestrictionType.__eq__	Bio.Restriction.Restriction.RestrictionType-class.html#__eq__
Bio.Restriction.Restriction.RestrictionType.__rfloordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rfloordiv__
Bio.Restriction.Restriction.AbstractCut.is_equischizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_equischizomer
Bio.Restriction.Restriction.RestrictionType.__len__	Bio.Restriction.Restriction.RestrictionType-class.html#__len__
Bio.Restriction.Restriction.RestrictionType.__ne__	Bio.Restriction.Restriction.RestrictionType-class.html#__ne__
Bio.Restriction.Restriction.NotDefined.elucidate	Bio.Restriction.Restriction.NotDefined-class.html#elucidate
Bio.Restriction.Restriction.AbstractCut.neoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#neoschizomers
Bio.Restriction.Restriction.AbstractCut.isoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#isoschizomers
Bio.Restriction.Restriction.RestrictionType.__add__	Bio.Restriction.Restriction.RestrictionType-class.html#__add__
Bio.Restriction.Restriction.RestrictionType.__gt__	Bio.Restriction.Restriction.RestrictionType-class.html#__gt__
Bio.Restriction.Restriction.NotDefined._drop	Bio.Restriction.Restriction.NotDefined-class.html#_drop
Bio.Restriction.Restriction.AbstractCut.is_neoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_neoschizomer
Bio.Restriction.Restriction.AbstractCut.search	Bio.Restriction.Restriction.AbstractCut-class.html#search
Bio.Restriction.Restriction.RestrictionType.__mod__	Bio.Restriction.Restriction.RestrictionType-class.html#__mod__
Bio.Restriction.Restriction.NotDefined.is_ambiguous	Bio.Restriction.Restriction.NotDefined-class.html#is_ambiguous
Bio.Restriction.Restriction.RestrictionType.__div__	Bio.Restriction.Restriction.RestrictionType-class.html#__div__
Bio.Restriction.Restriction.RestrictionType.__le__	Bio.Restriction.Restriction.RestrictionType-class.html#__le__
Bio.Restriction.Restriction.RestrictionType.__repr__	Bio.Restriction.Restriction.RestrictionType-class.html#__repr__
Bio.Restriction.Restriction.RestrictionType.__floordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__floordiv__
Bio.Restriction.Restriction.NotDefined._mod2	Bio.Restriction.Restriction.NotDefined-class.html#_mod2
Bio.Restriction.Restriction.RestrictionType.__ge__	Bio.Restriction.Restriction.RestrictionType-class.html#__ge__
Bio.Restriction.Restriction.AbstractCut.equischizomers	Bio.Restriction.Restriction.AbstractCut-class.html#equischizomers
Bio.Restriction.Restriction.Not_available	Bio.Restriction.Restriction.Not_available-class.html
Bio.Restriction.Restriction.RestrictionType.__rtruediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rtruediv__
Bio.Restriction.Restriction.RestrictionType.__str__	Bio.Restriction.Restriction.RestrictionType-class.html#__str__
Bio.Restriction.Restriction.RestrictionType.__truediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__truediv__
Bio.Restriction.Restriction.AbstractCut.frequency	Bio.Restriction.Restriction.AbstractCut-class.html#frequency
Bio.Restriction.Restriction.RestrictionType.__rdiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rdiv__
Bio.Restriction.Restriction.RestrictionType.__lt__	Bio.Restriction.Restriction.RestrictionType-class.html#__lt__
Bio.Restriction.Restriction.AbstractCut.is_isoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_isoschizomer
Bio.Restriction.Restriction.Not_available.buffers	Bio.Restriction.Restriction.Not_available-class.html#buffers
Bio.Restriction.Restriction.RestrictionType.__rshift__	Bio.Restriction.Restriction.RestrictionType-class.html#__rshift__
Bio.Restriction.Restriction.AbstractCut.all_suppliers	Bio.Restriction.Restriction.AbstractCut-class.html#all_suppliers
Bio.Restriction.Restriction.RestrictionType.__eq__	Bio.Restriction.Restriction.RestrictionType-class.html#__eq__
Bio.Restriction.Restriction.RestrictionType.__rfloordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rfloordiv__
Bio.Restriction.Restriction.RestrictionType.__init__	Bio.Restriction.Restriction.RestrictionType-class.html#__init__
Bio.Restriction.Restriction.AbstractCut.is_equischizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_equischizomer
Bio.Restriction.Restriction.RestrictionType.__len__	Bio.Restriction.Restriction.RestrictionType-class.html#__len__
Bio.Restriction.Restriction.RestrictionType.__ne__	Bio.Restriction.Restriction.RestrictionType-class.html#__ne__
Bio.Restriction.Restriction.AbstractCut.neoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#neoschizomers
Bio.Restriction.Restriction.AbstractCut.isoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#isoschizomers
Bio.Restriction.Restriction.RestrictionType.__add__	Bio.Restriction.Restriction.RestrictionType-class.html#__add__
Bio.Restriction.Restriction.RestrictionType.__gt__	Bio.Restriction.Restriction.RestrictionType-class.html#__gt__
Bio.Restriction.Restriction.AbstractCut.is_neoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_neoschizomer
Bio.Restriction.Restriction.Not_available.supplier_list	Bio.Restriction.Restriction.Not_available-class.html#supplier_list
Bio.Restriction.Restriction.AbstractCut.search	Bio.Restriction.Restriction.AbstractCut-class.html#search
Bio.Restriction.Restriction.RestrictionType.__mod__	Bio.Restriction.Restriction.RestrictionType-class.html#__mod__
Bio.Restriction.Restriction.Not_available.suppliers	Bio.Restriction.Restriction.Not_available-class.html#suppliers
Bio.Restriction.Restriction.RestrictionType.__div__	Bio.Restriction.Restriction.RestrictionType-class.html#__div__
Bio.Restriction.Restriction.RestrictionType.__le__	Bio.Restriction.Restriction.RestrictionType-class.html#__le__
Bio.Restriction.Restriction.Not_available.is_comm	Bio.Restriction.Restriction.Not_available-class.html#is_comm
Bio.Restriction.Restriction.RestrictionType.__repr__	Bio.Restriction.Restriction.RestrictionType-class.html#__repr__
Bio.Restriction.Restriction.RestrictionType.__floordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__floordiv__
Bio.Restriction.Restriction.RestrictionType.__ge__	Bio.Restriction.Restriction.RestrictionType-class.html#__ge__
Bio.Restriction.Restriction.AbstractCut.equischizomers	Bio.Restriction.Restriction.AbstractCut-class.html#equischizomers
Bio.Restriction.Restriction.OneCut	Bio.Restriction.Restriction.OneCut-class.html
Bio.Restriction.Restriction.RestrictionType.__rtruediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rtruediv__
Bio.Restriction.Restriction.RestrictionType.__str__	Bio.Restriction.Restriction.RestrictionType-class.html#__str__
Bio.Restriction.Restriction.RestrictionType.__truediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__truediv__
Bio.Restriction.Restriction.AbstractCut.frequency	Bio.Restriction.Restriction.AbstractCut-class.html#frequency
Bio.Restriction.Restriction.RestrictionType.__rdiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rdiv__
Bio.Restriction.Restriction.RestrictionType.__lt__	Bio.Restriction.Restriction.RestrictionType-class.html#__lt__
Bio.Restriction.Restriction.AbstractCut.is_isoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_isoschizomer
Bio.Restriction.Restriction.RestrictionType.__init__	Bio.Restriction.Restriction.RestrictionType-class.html#__init__
Bio.Restriction.Restriction.RestrictionType.__rshift__	Bio.Restriction.Restriction.RestrictionType-class.html#__rshift__
Bio.Restriction.Restriction.AbstractCut.all_suppliers	Bio.Restriction.Restriction.AbstractCut-class.html#all_suppliers
Bio.Restriction.Restriction.RestrictionType.__eq__	Bio.Restriction.Restriction.RestrictionType-class.html#__eq__
Bio.Restriction.Restriction.RestrictionType.__rfloordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rfloordiv__
Bio.Restriction.Restriction.AbstractCut.is_equischizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_equischizomer
Bio.Restriction.Restriction.RestrictionType.__len__	Bio.Restriction.Restriction.RestrictionType-class.html#__len__
Bio.Restriction.Restriction.OneCut.cut_twice	Bio.Restriction.Restriction.OneCut-class.html#cut_twice
Bio.Restriction.Restriction.RestrictionType.__ne__	Bio.Restriction.Restriction.RestrictionType-class.html#__ne__
Bio.Restriction.Restriction.RestrictionType.__ge__	Bio.Restriction.Restriction.RestrictionType-class.html#__ge__
Bio.Restriction.Restriction.AbstractCut.neoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#neoschizomers
Bio.Restriction.Restriction.AbstractCut.isoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#isoschizomers
Bio.Restriction.Restriction.OneCut._rev_modify	Bio.Restriction.Restriction.OneCut-class.html#_rev_modify
Bio.Restriction.Restriction.RestrictionType.__add__	Bio.Restriction.Restriction.RestrictionType-class.html#__add__
Bio.Restriction.Restriction.RestrictionType.__gt__	Bio.Restriction.Restriction.RestrictionType-class.html#__gt__
Bio.Restriction.Restriction.AbstractCut.is_neoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_neoschizomer
Bio.Restriction.Restriction.AbstractCut.search	Bio.Restriction.Restriction.AbstractCut-class.html#search
Bio.Restriction.Restriction.RestrictionType.__mod__	Bio.Restriction.Restriction.RestrictionType-class.html#__mod__
Bio.Restriction.Restriction.OneCut.characteristic	Bio.Restriction.Restriction.OneCut-class.html#characteristic
Bio.Restriction.Restriction.OneCut.cut_once	Bio.Restriction.Restriction.OneCut-class.html#cut_once
Bio.Restriction.Restriction.RestrictionType.__div__	Bio.Restriction.Restriction.RestrictionType-class.html#__div__
Bio.Restriction.Restriction.RestrictionType.__le__	Bio.Restriction.Restriction.RestrictionType-class.html#__le__
Bio.Restriction.Restriction.RestrictionType.__repr__	Bio.Restriction.Restriction.RestrictionType-class.html#__repr__
Bio.Restriction.Restriction.RestrictionType.__floordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__floordiv__
Bio.Restriction.Restriction.OneCut._modify	Bio.Restriction.Restriction.OneCut-class.html#_modify
Bio.Restriction.Restriction.AbstractCut.equischizomers	Bio.Restriction.Restriction.AbstractCut-class.html#equischizomers
Bio.Restriction.Restriction.Ov3	Bio.Restriction.Restriction.Ov3-class.html
Bio.Restriction.Restriction.RestrictionType.__rtruediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rtruediv__
Bio.Restriction.Restriction.RestrictionType.__str__	Bio.Restriction.Restriction.RestrictionType-class.html#__str__
Bio.Restriction.Restriction.Ov3.compatible_end	Bio.Restriction.Restriction.Ov3-class.html#compatible_end
Bio.Restriction.Restriction.Ov3.is_blunt	Bio.Restriction.Restriction.Ov3-class.html#is_blunt
Bio.Restriction.Restriction.RestrictionType.__truediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__truediv__
Bio.Restriction.Restriction.Ov3.catalyze	Bio.Restriction.Restriction.Ov3-class.html#catalyze
Bio.Restriction.Restriction.RestrictionType.__rdiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rdiv__
Bio.Restriction.Restriction.RestrictionType.__lt__	Bio.Restriction.Restriction.RestrictionType-class.html#__lt__
Bio.Restriction.Restriction.AbstractCut.is_isoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_isoschizomer
Bio.Restriction.Restriction.RestrictionType.__init__	Bio.Restriction.Restriction.RestrictionType-class.html#__init__
Bio.Restriction.Restriction.RestrictionType.__rshift__	Bio.Restriction.Restriction.RestrictionType-class.html#__rshift__
Bio.Restriction.Restriction.AbstractCut.all_suppliers	Bio.Restriction.Restriction.AbstractCut-class.html#all_suppliers
Bio.Restriction.Restriction.Ov3.is_3overhang	Bio.Restriction.Restriction.Ov3-class.html#is_3overhang
Bio.Restriction.Restriction.RestrictionType.__eq__	Bio.Restriction.Restriction.RestrictionType-class.html#__eq__
Bio.Restriction.Restriction.RestrictionType.__le__	Bio.Restriction.Restriction.RestrictionType-class.html#__le__
Bio.Restriction.Restriction.RestrictionType.__rfloordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rfloordiv__
Bio.Restriction.Restriction.AbstractCut.is_equischizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_equischizomer
Bio.Restriction.Restriction.Ov3.overhang	Bio.Restriction.Restriction.Ov3-class.html#overhang
Bio.Restriction.Restriction.RestrictionType.__repr__	Bio.Restriction.Restriction.RestrictionType-class.html#__repr__
Bio.Restriction.Restriction.RestrictionType.__ne__	Bio.Restriction.Restriction.RestrictionType-class.html#__ne__
Bio.Restriction.Restriction.Ov3.catalyse	Bio.Restriction.Restriction.Ov3-class.html#catalyse
Bio.Restriction.Restriction.AbstractCut.neoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#neoschizomers
Bio.Restriction.Restriction.AbstractCut.isoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#isoschizomers
Bio.Restriction.Restriction.RestrictionType.__add__	Bio.Restriction.Restriction.RestrictionType-class.html#__add__
Bio.Restriction.Restriction.RestrictionType.__gt__	Bio.Restriction.Restriction.RestrictionType-class.html#__gt__
Bio.Restriction.Restriction.Ov3.is_5overhang	Bio.Restriction.Restriction.Ov3-class.html#is_5overhang
Bio.Restriction.Restriction.AbstractCut.is_neoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_neoschizomer
Bio.Restriction.Restriction.AbstractCut.search	Bio.Restriction.Restriction.AbstractCut-class.html#search
Bio.Restriction.Restriction.RestrictionType.__mod__	Bio.Restriction.Restriction.RestrictionType-class.html#__mod__
Bio.Restriction.Restriction.RestrictionType.__div__	Bio.Restriction.Restriction.RestrictionType-class.html#__div__
Bio.Restriction.Restriction.AbstractCut.frequency	Bio.Restriction.Restriction.AbstractCut-class.html#frequency
Bio.Restriction.Restriction.RestrictionType.__len__	Bio.Restriction.Restriction.RestrictionType-class.html#__len__
Bio.Restriction.Restriction.RestrictionType.__floordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__floordiv__
Bio.Restriction.Restriction.Ov3._mod1	Bio.Restriction.Restriction.Ov3-class.html#_mod1
Bio.Restriction.Restriction.RestrictionType.__ge__	Bio.Restriction.Restriction.RestrictionType-class.html#__ge__
Bio.Restriction.Restriction.AbstractCut.equischizomers	Bio.Restriction.Restriction.AbstractCut-class.html#equischizomers
Bio.Restriction.Restriction.Ov5	Bio.Restriction.Restriction.Ov5-class.html
Bio.Restriction.Restriction.RestrictionType.__rtruediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rtruediv__
Bio.Restriction.Restriction.RestrictionType.__str__	Bio.Restriction.Restriction.RestrictionType-class.html#__str__
Bio.Restriction.Restriction.Ov5.compatible_end	Bio.Restriction.Restriction.Ov5-class.html#compatible_end
Bio.Restriction.Restriction.Ov5.is_blunt	Bio.Restriction.Restriction.Ov5-class.html#is_blunt
Bio.Restriction.Restriction.RestrictionType.__truediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__truediv__
Bio.Restriction.Restriction.Ov5.catalyze	Bio.Restriction.Restriction.Ov5-class.html#catalyze
Bio.Restriction.Restriction.RestrictionType.__rdiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rdiv__
Bio.Restriction.Restriction.RestrictionType.__lt__	Bio.Restriction.Restriction.RestrictionType-class.html#__lt__
Bio.Restriction.Restriction.AbstractCut.is_isoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_isoschizomer
Bio.Restriction.Restriction.RestrictionType.__init__	Bio.Restriction.Restriction.RestrictionType-class.html#__init__
Bio.Restriction.Restriction.RestrictionType.__rshift__	Bio.Restriction.Restriction.RestrictionType-class.html#__rshift__
Bio.Restriction.Restriction.AbstractCut.all_suppliers	Bio.Restriction.Restriction.AbstractCut-class.html#all_suppliers
Bio.Restriction.Restriction.Ov5.is_3overhang	Bio.Restriction.Restriction.Ov5-class.html#is_3overhang
Bio.Restriction.Restriction.RestrictionType.__eq__	Bio.Restriction.Restriction.RestrictionType-class.html#__eq__
Bio.Restriction.Restriction.RestrictionType.__le__	Bio.Restriction.Restriction.RestrictionType-class.html#__le__
Bio.Restriction.Restriction.RestrictionType.__rfloordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rfloordiv__
Bio.Restriction.Restriction.AbstractCut.is_equischizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_equischizomer
Bio.Restriction.Restriction.Ov5.overhang	Bio.Restriction.Restriction.Ov5-class.html#overhang
Bio.Restriction.Restriction.RestrictionType.__repr__	Bio.Restriction.Restriction.RestrictionType-class.html#__repr__
Bio.Restriction.Restriction.RestrictionType.__ne__	Bio.Restriction.Restriction.RestrictionType-class.html#__ne__
Bio.Restriction.Restriction.Ov5.catalyse	Bio.Restriction.Restriction.Ov5-class.html#catalyse
Bio.Restriction.Restriction.AbstractCut.neoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#neoschizomers
Bio.Restriction.Restriction.AbstractCut.isoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#isoschizomers
Bio.Restriction.Restriction.RestrictionType.__add__	Bio.Restriction.Restriction.RestrictionType-class.html#__add__
Bio.Restriction.Restriction.RestrictionType.__gt__	Bio.Restriction.Restriction.RestrictionType-class.html#__gt__
Bio.Restriction.Restriction.Ov5.is_5overhang	Bio.Restriction.Restriction.Ov5-class.html#is_5overhang
Bio.Restriction.Restriction.AbstractCut.is_neoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_neoschizomer
Bio.Restriction.Restriction.AbstractCut.search	Bio.Restriction.Restriction.AbstractCut-class.html#search
Bio.Restriction.Restriction.RestrictionType.__mod__	Bio.Restriction.Restriction.RestrictionType-class.html#__mod__
Bio.Restriction.Restriction.RestrictionType.__div__	Bio.Restriction.Restriction.RestrictionType-class.html#__div__
Bio.Restriction.Restriction.AbstractCut.frequency	Bio.Restriction.Restriction.AbstractCut-class.html#frequency
Bio.Restriction.Restriction.RestrictionType.__len__	Bio.Restriction.Restriction.RestrictionType-class.html#__len__
Bio.Restriction.Restriction.RestrictionType.__floordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__floordiv__
Bio.Restriction.Restriction.Ov5._mod1	Bio.Restriction.Restriction.Ov5-class.html#_mod1
Bio.Restriction.Restriction.RestrictionType.__ge__	Bio.Restriction.Restriction.RestrictionType-class.html#__ge__
Bio.Restriction.Restriction.AbstractCut.equischizomers	Bio.Restriction.Restriction.AbstractCut-class.html#equischizomers
Bio.Restriction.Restriction.Palindromic	Bio.Restriction.Restriction.Palindromic-class.html
Bio.Restriction.Restriction.RestrictionType.__rtruediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rtruediv__
Bio.Restriction.Restriction.RestrictionType.__str__	Bio.Restriction.Restriction.RestrictionType-class.html#__str__
Bio.Restriction.Restriction.RestrictionType.__truediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__truediv__
Bio.Restriction.Restriction.AbstractCut.frequency	Bio.Restriction.Restriction.AbstractCut-class.html#frequency
Bio.Restriction.Restriction.RestrictionType.__rdiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rdiv__
Bio.Restriction.Restriction.RestrictionType.__lt__	Bio.Restriction.Restriction.RestrictionType-class.html#__lt__
Bio.Restriction.Restriction.AbstractCut.is_isoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_isoschizomer
Bio.Restriction.Restriction.RestrictionType.__init__	Bio.Restriction.Restriction.RestrictionType-class.html#__init__
Bio.Restriction.Restriction.RestrictionType.__rshift__	Bio.Restriction.Restriction.RestrictionType-class.html#__rshift__
Bio.Restriction.Restriction.AbstractCut.all_suppliers	Bio.Restriction.Restriction.AbstractCut-class.html#all_suppliers
Bio.Restriction.Restriction.RestrictionType.__eq__	Bio.Restriction.Restriction.RestrictionType-class.html#__eq__
Bio.Restriction.Restriction.RestrictionType.__rfloordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rfloordiv__
Bio.Restriction.Restriction.AbstractCut.is_equischizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_equischizomer
Bio.Restriction.Restriction.RestrictionType.__len__	Bio.Restriction.Restriction.RestrictionType-class.html#__len__
Bio.Restriction.Restriction.RestrictionType.__ne__	Bio.Restriction.Restriction.RestrictionType-class.html#__ne__
Bio.Restriction.Restriction.AbstractCut.neoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#neoschizomers
Bio.Restriction.Restriction.AbstractCut.isoschizomers	Bio.Restriction.Restriction.AbstractCut-class.html#isoschizomers
Bio.Restriction.Restriction.RestrictionType.__add__	Bio.Restriction.Restriction.RestrictionType-class.html#__add__
Bio.Restriction.Restriction.RestrictionType.__gt__	Bio.Restriction.Restriction.RestrictionType-class.html#__gt__
Bio.Restriction.Restriction.AbstractCut.is_neoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_neoschizomer
Bio.Restriction.Restriction.AbstractCut.search	Bio.Restriction.Restriction.AbstractCut-class.html#search
Bio.Restriction.Restriction.RestrictionType.__mod__	Bio.Restriction.Restriction.RestrictionType-class.html#__mod__
Bio.Restriction.Restriction.Palindromic._search	Bio.Restriction.Restriction.Palindromic-class.html#_search
Bio.Restriction.Restriction.RestrictionType.__div__	Bio.Restriction.Restriction.RestrictionType-class.html#__div__
Bio.Restriction.Restriction.RestrictionType.__le__	Bio.Restriction.Restriction.RestrictionType-class.html#__le__
Bio.Restriction.Restriction.Palindromic.is_palindromic	Bio.Restriction.Restriction.Palindromic-class.html#is_palindromic
Bio.Restriction.Restriction.RestrictionType.__repr__	Bio.Restriction.Restriction.RestrictionType-class.html#__repr__
Bio.Restriction.Restriction.RestrictionType.__floordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__floordiv__
Bio.Restriction.Restriction.RestrictionType.__ge__	Bio.Restriction.Restriction.RestrictionType-class.html#__ge__
Bio.Restriction.Restriction.AbstractCut.equischizomers	Bio.Restriction.Restriction.AbstractCut-class.html#equischizomers
Bio.Restriction.Restriction.RestrictionBatch	Bio.Restriction.Restriction.RestrictionBatch-class.html
Bio.Restriction.Restriction.RestrictionBatch.as_string	Bio.Restriction.Restriction.RestrictionBatch-class.html#as_string
Bio.Restriction.Restriction.RestrictionBatch.__str__	Bio.Restriction.Restriction.RestrictionBatch-class.html#__str__
Bio.Restriction.Restriction.RestrictionBatch.lambdasplit	Bio.Restriction.Restriction.RestrictionBatch-class.html#lambdasplit
Bio.Restriction.Restriction.RestrictionBatch.__iadd__	Bio.Restriction.Restriction.RestrictionBatch-class.html#__iadd__
Bio.Restriction.Restriction.RestrictionBatch.show_codes	Bio.Restriction.Restriction.RestrictionBatch-class.html#show_codes
Bio.Restriction.Restriction.RestrictionBatch.__rdiv__	Bio.Restriction.Restriction.RestrictionBatch-class.html#__rdiv__
Bio.Restriction.Restriction.RestrictionBatch.__init__	Bio.Restriction.Restriction.RestrictionBatch-class.html#__init__
Bio.Restriction.Restriction.RestrictionBatch.__contains__	Bio.Restriction.Restriction.RestrictionBatch-class.html#__contains__
Bio.Restriction.Restriction.RestrictionBatch.format	Bio.Restriction.Restriction.RestrictionBatch-class.html#format
Bio.Restriction.Restriction.RestrictionBatch.add	Bio.Restriction.Restriction.RestrictionBatch-class.html#add
Bio.Restriction.Restriction.RestrictionBatch.split	Bio.Restriction.Restriction.RestrictionBatch-class.html#split
Bio.Restriction.Restriction.RestrictionBatch.elements	Bio.Restriction.Restriction.RestrictionBatch-class.html#elements
Bio.Restriction.Restriction.RestrictionBatch.current_suppliers	Bio.Restriction.Restriction.RestrictionBatch-class.html#current_suppliers
Bio.Restriction.Restriction.RestrictionBatch.get	Bio.Restriction.Restriction.RestrictionBatch-class.html#get
Bio.Restriction.Restriction.RestrictionBatch.add_supplier	Bio.Restriction.Restriction.RestrictionBatch-class.html#add_supplier
Bio.Restriction.Restriction.RestrictionBatch.__add__	Bio.Restriction.Restriction.RestrictionBatch-class.html#__add__
Bio.Restriction.Restriction.RestrictionBatch.suppl_codes	Bio.Restriction.Restriction.RestrictionBatch-class.html#suppl_codes
Bio.Restriction.Restriction.RestrictionBatch.search	Bio.Restriction.Restriction.RestrictionBatch-class.html#search
Bio.Restriction.Restriction.RestrictionBatch.add_nocheck	Bio.Restriction.Restriction.RestrictionBatch-class.html#add_nocheck
Bio.Restriction.Restriction.RestrictionBatch.remove	Bio.Restriction.Restriction.RestrictionBatch-class.html#remove
Bio.Restriction.Restriction.RestrictionBatch.is_restriction	Bio.Restriction.Restriction.RestrictionBatch-class.html#is_restriction
Bio.Restriction.Restriction.RestrictionBatch.__div__	Bio.Restriction.Restriction.RestrictionBatch-class.html#__div__
Bio.Restriction.Restriction.RestrictionBatch.__repr__	Bio.Restriction.Restriction.RestrictionBatch-class.html#__repr__
Bio.Restriction.Restriction.RestrictionType	Bio.Restriction.Restriction.RestrictionType-class.html
Bio.Restriction.Restriction.RestrictionType.__rtruediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rtruediv__
Bio.Restriction.Restriction.RestrictionType.__str__	Bio.Restriction.Restriction.RestrictionType-class.html#__str__
Bio.Restriction.Restriction.RestrictionType.__rdiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rdiv__
Bio.Restriction.Restriction.RestrictionType.__truediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__truediv__
Bio.Restriction.Restriction.RestrictionType.__lt__	Bio.Restriction.Restriction.RestrictionType-class.html#__lt__
Bio.Restriction.Restriction.RestrictionType.__init__	Bio.Restriction.Restriction.RestrictionType-class.html#__init__
Bio.Restriction.Restriction.RestrictionType.__rshift__	Bio.Restriction.Restriction.RestrictionType-class.html#__rshift__
Bio.Restriction.Restriction.RestrictionType.__rfloordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rfloordiv__
Bio.Restriction.Restriction.RestrictionType.__len__	Bio.Restriction.Restriction.RestrictionType-class.html#__len__
Bio.Restriction.Restriction.RestrictionType.__ne__	Bio.Restriction.Restriction.RestrictionType-class.html#__ne__
Bio.Restriction.Restriction.RestrictionType.__add__	Bio.Restriction.Restriction.RestrictionType-class.html#__add__
Bio.Restriction.Restriction.RestrictionType.__gt__	Bio.Restriction.Restriction.RestrictionType-class.html#__gt__
Bio.Restriction.Restriction.RestrictionType.__eq__	Bio.Restriction.Restriction.RestrictionType-class.html#__eq__
Bio.Restriction.Restriction.RestrictionType.__mod__	Bio.Restriction.Restriction.RestrictionType-class.html#__mod__
Bio.Restriction.Restriction.RestrictionType.__div__	Bio.Restriction.Restriction.RestrictionType-class.html#__div__
Bio.Restriction.Restriction.RestrictionType.__le__	Bio.Restriction.Restriction.RestrictionType-class.html#__le__
Bio.Restriction.Restriction.RestrictionType.__repr__	Bio.Restriction.Restriction.RestrictionType-class.html#__repr__
Bio.Restriction.Restriction.RestrictionType.__floordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__floordiv__
Bio.Restriction.Restriction.RestrictionType.__ge__	Bio.Restriction.Restriction.RestrictionType-class.html#__ge__
Bio.Restriction.Restriction.TwoCuts	Bio.Restriction.Restriction.TwoCuts-class.html
Bio.Restriction.Restriction.RestrictionType.__rtruediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rtruediv__
Bio.Restriction.Restriction.RestrictionType.__str__	Bio.Restriction.Restriction.RestrictionType-class.html#__str__
Bio.Restriction.Restriction.RestrictionType.__truediv__	Bio.Restriction.Restriction.RestrictionType-class.html#__truediv__
Bio.Restriction.Restriction.AbstractCut.frequency	Bio.Restriction.Restriction.AbstractCut-class.html#frequency
Bio.Restriction.Restriction.RestrictionType.__rdiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rdiv__
Bio.Restriction.Restriction.RestrictionType.__lt__	Bio.Restriction.Restriction.RestrictionType-class.html#__lt__
Bio.Restriction.Restriction.AbstractCut.is_isoschizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_isoschizomer
Bio.Restriction.Restriction.RestrictionType.__init__	Bio.Restriction.Restriction.RestrictionType-class.html#__init__
Bio.Restriction.Restriction.RestrictionType.__rshift__	Bio.Restriction.Restriction.RestrictionType-class.html#__rshift__
Bio.Restriction.Restriction.AbstractCut.all_suppliers	Bio.Restriction.Restriction.AbstractCut-class.html#all_suppliers
Bio.Restriction.Restriction.RestrictionType.__eq__	Bio.Restriction.Restriction.RestrictionType-class.html#__eq__
Bio.Restriction.Restriction.RestrictionType.__rfloordiv__	Bio.Restriction.Restriction.RestrictionType-class.html#__rfloordiv__
Bio.Restriction.Restriction.AbstractCut.is_equischizomer	Bio.Restriction.Restriction.AbstractCut-class.html#is_equischizomer
Bio.Restriction.Restriction.RestrictionType.__len__	Bio.Restriction.Restriction.RestrictionType-class.html#__len__
Bio.Restriction.Restriction.TwoCuts.cut_twice	Bio.Restriction.Restriction.TwoCuts-class.html#cut_twice
Bio.Restriction.Restriction.RestrictionType.__ne__	Bio.Restriction.Restriction.RestrictionType-class.html#__ne__
Bio.Restriction.Restriction.RestrictionType.__ge__	Bio.Restriction.Restriction.RestrictionType-class.html#__ge__
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Bio.Restriction.Restriction.Unknown.catalyse	Bio.Restriction.Restriction.Unknown-class.html#catalyse
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Bio.Restriction._Update.RestrictionCompiler.TypeCompiler	Bio.Restriction._Update.RestrictionCompiler.TypeCompiler-class.html
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Bio.Restriction._Update.Update.FtpPasswordError	Bio.Restriction._Update.Update.FtpPasswordError-class.html
Bio.Restriction._Update.Update.FtpPasswordError.__init__	Bio.Restriction._Update.Update.FtpPasswordError-class.html#__init__
Bio.Restriction._Update.Update.RebaseUpdate	Bio.Restriction._Update.Update.RebaseUpdate-class.html
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Bio.SCOP.Astral	Bio.SCOP.Astral-class.html
Bio.SCOP.Astral.isDomainInEv	Bio.SCOP.Astral-class.html#isDomainInEv
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Bio.SCOP.Astral.getSeqBySid	Bio.SCOP.Astral-class.html#getSeqBySid
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Bio.SeqFeature.FeatureLocation	Bio.SeqFeature.FeatureLocation-class.html
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Bio.SeqFeature.FeatureLocation._get_nofuzzy_start	Bio.SeqFeature.FeatureLocation-class.html#_get_nofuzzy_start
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Bio.SeqFeature.FeatureLocation.__str__	Bio.SeqFeature.FeatureLocation-class.html#__str__
Bio.SeqFeature.FeatureLocation.start	Bio.SeqFeature.FeatureLocation-class.html#start
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Bio.SeqFeature.FeatureLocation._shift	Bio.SeqFeature.FeatureLocation-class.html#_shift
Bio.SeqFeature.FeatureLocation.__repr__	Bio.SeqFeature.FeatureLocation-class.html#__repr__
Bio.SeqFeature.FeatureLocation.nofuzzy_start	Bio.SeqFeature.FeatureLocation-class.html#nofuzzy_start
Bio.SeqFeature.FeatureLocation.__init__	Bio.SeqFeature.FeatureLocation-class.html#__init__
Bio.SeqFeature.OneOfPosition	Bio.SeqFeature.OneOfPosition-class.html
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Bio.SeqFeature.AbstractPosition.__cmp__	Bio.SeqFeature.AbstractPosition-class.html#__cmp__
Bio.SeqFeature.AbstractPosition._shift	Bio.SeqFeature.AbstractPosition-class.html#_shift
Bio.SeqFeature.OneOfPosition.__repr__	Bio.SeqFeature.OneOfPosition-class.html#__repr__
Bio.SeqFeature.OneOfPosition.__init__	Bio.SeqFeature.OneOfPosition-class.html#__init__
Bio.SeqFeature.PositionGap	Bio.SeqFeature.PositionGap-class.html
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Bio.SeqFeature.PositionGap.__repr__	Bio.SeqFeature.PositionGap-class.html#__repr__
Bio.SeqFeature.PositionGap.__init__	Bio.SeqFeature.PositionGap-class.html#__init__
Bio.SeqFeature.Reference	Bio.SeqFeature.Reference-class.html
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Bio.SeqFeature.Reference.__repr__	Bio.SeqFeature.Reference-class.html#__repr__
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Bio.SeqFeature.SeqFeature	Bio.SeqFeature.SeqFeature-class.html
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Bio.SeqFeature.SeqFeature.__repr__	Bio.SeqFeature.SeqFeature-class.html#__repr__
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Bio.SeqFeature.WithinPosition	Bio.SeqFeature.WithinPosition-class.html
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Bio.SeqFeature.AbstractPosition.__cmp__	Bio.SeqFeature.AbstractPosition-class.html#__cmp__
Bio.SeqFeature.AbstractPosition._shift	Bio.SeqFeature.AbstractPosition-class.html#_shift
Bio.SeqFeature.AbstractPosition.__repr__	Bio.SeqFeature.AbstractPosition-class.html#__repr__
Bio.SeqFeature.WithinPosition.__init__	Bio.SeqFeature.WithinPosition-class.html#__init__
Bio.SeqIO.FastaIO.FastaWriter	Bio.SeqIO.FastaIO.FastaWriter-class.html
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_records	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_records
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_footer	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_footer
Bio.SeqIO.Interfaces.SequenceWriter.clean	Bio.SeqIO.Interfaces.SequenceWriter-class.html#clean
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_file	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_file
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_header	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_header
Bio.SeqIO.Interfaces.SequenceWriter._get_seq_string	Bio.SeqIO.Interfaces.SequenceWriter-class.html#_get_seq_string
Bio.SeqIO.FastaIO.FastaWriter.write_record	Bio.SeqIO.FastaIO.FastaWriter-class.html#write_record
Bio.SeqIO.FastaIO.FastaWriter.__init__	Bio.SeqIO.FastaIO.FastaWriter-class.html#__init__
Bio.SeqIO.InsdcIO.GenBankWriter	Bio.SeqIO.InsdcIO.GenBankWriter-class.html
Bio.SeqIO.InsdcIO.GenBankWriter._write_sequence	Bio.SeqIO.InsdcIO.GenBankWriter-class.html#_write_sequence
Bio.SeqIO.InsdcIO.GenBankWriter._write_the_first_line	Bio.SeqIO.InsdcIO.GenBankWriter-class.html#_write_the_first_line
Bio.SeqIO.InsdcIO.GenBankWriter._write_feature_qualifier	Bio.SeqIO.InsdcIO.GenBankWriter-class.html#_write_feature_qualifier
Bio.SeqIO.InsdcIO.GenBankWriter._write_multi_entries	Bio.SeqIO.InsdcIO.GenBankWriter-class.html#_write_multi_entries
Bio.SeqIO.InsdcIO.GenBankWriter._get_annotation_str	Bio.SeqIO.InsdcIO.GenBankWriter-class.html#_get_annotation_str
Bio.SeqIO.InsdcIO.GenBankWriter._write_multi_line	Bio.SeqIO.InsdcIO.GenBankWriter-class.html#_write_multi_line
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_footer	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_footer
Bio.SeqIO.InsdcIO.GenBankWriter._write_single_line	Bio.SeqIO.InsdcIO.GenBankWriter-class.html#_write_single_line
Bio.SeqIO.InsdcIO.GenBankWriter._wrap_location	Bio.SeqIO.InsdcIO.GenBankWriter-class.html#_wrap_location
Bio.SeqIO.InsdcIO.GenBankWriter.HEADER_WIDTH	Bio.SeqIO.InsdcIO.GenBankWriter-class.html#HEADER_WIDTH
Bio.SeqIO.InsdcIO.GenBankWriter.MAX_WIDTH	Bio.SeqIO.InsdcIO.GenBankWriter-class.html#MAX_WIDTH
Bio.SeqIO.Interfaces.SequenceWriter.clean	Bio.SeqIO.Interfaces.SequenceWriter-class.html#clean
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_header	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_header
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_records	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_records
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_file	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_file
Bio.SeqIO.InsdcIO.GenBankWriter.write_record	Bio.SeqIO.InsdcIO.GenBankWriter-class.html#write_record
Bio.SeqIO.Interfaces.SequenceWriter._get_seq_string	Bio.SeqIO.Interfaces.SequenceWriter-class.html#_get_seq_string
Bio.SeqIO.InsdcIO.GenBankWriter._write_feature	Bio.SeqIO.InsdcIO.GenBankWriter-class.html#_write_feature
Bio.SeqIO.Interfaces.SequentialSequenceWriter.__init__	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#__init__
Bio.SeqIO.InsdcIO.GenBankWriter.QUALIFIER_INDENT	Bio.SeqIO.InsdcIO.GenBankWriter-class.html#QUALIFIER_INDENT
Bio.SeqIO.Interfaces.InterlacedSequenceIterator	Bio.SeqIO.Interfaces.InterlacedSequenceIterator-class.html
Bio.SeqIO.Interfaces.InterlacedSequenceIterator.__getitem__	Bio.SeqIO.Interfaces.InterlacedSequenceIterator-class.html#__getitem__
Bio.SeqIO.Interfaces.InterlacedSequenceIterator.next	Bio.SeqIO.Interfaces.InterlacedSequenceIterator-class.html#next
Bio.SeqIO.Interfaces.InterlacedSequenceIterator.__iter__	Bio.SeqIO.Interfaces.InterlacedSequenceIterator-class.html#__iter__
Bio.SeqIO.Interfaces.InterlacedSequenceIterator.__init__	Bio.SeqIO.Interfaces.InterlacedSequenceIterator-class.html#__init__
Bio.SeqIO.Interfaces.InterlacedSequenceIterator.move_start	Bio.SeqIO.Interfaces.InterlacedSequenceIterator-class.html#move_start
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Bio.SeqIO.Interfaces.SequenceIterator	Bio.SeqIO.Interfaces.SequenceIterator-class.html
Bio.SeqIO.Interfaces.SequenceIterator.__iter__	Bio.SeqIO.Interfaces.SequenceIterator-class.html#__iter__
Bio.SeqIO.Interfaces.SequenceIterator.__init__	Bio.SeqIO.Interfaces.SequenceIterator-class.html#__init__
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Bio.SeqIO.Interfaces.SequenceWriter	Bio.SeqIO.Interfaces.SequenceWriter-class.html
Bio.SeqIO.Interfaces.SequenceWriter.write_file	Bio.SeqIO.Interfaces.SequenceWriter-class.html#write_file
Bio.SeqIO.Interfaces.SequenceWriter._get_seq_string	Bio.SeqIO.Interfaces.SequenceWriter-class.html#_get_seq_string
Bio.SeqIO.Interfaces.SequenceWriter.__init__	Bio.SeqIO.Interfaces.SequenceWriter-class.html#__init__
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Bio.SeqIO.Interfaces.SequentialSequenceWriter	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_header	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_header
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Bio.SeqIO.Interfaces.SequenceWriter.clean	Bio.SeqIO.Interfaces.SequenceWriter-class.html#clean
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_file	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_file
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_records	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_records
Bio.SeqIO.Interfaces.SequenceWriter._get_seq_string	Bio.SeqIO.Interfaces.SequenceWriter-class.html#_get_seq_string
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_record	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_record
Bio.SeqIO.Interfaces.SequentialSequenceWriter.__init__	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#__init__
Bio.SeqIO.PhdIO.PhdWriter	Bio.SeqIO.PhdIO.PhdWriter-class.html
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_records	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_records
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_footer	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_footer
Bio.SeqIO.Interfaces.SequenceWriter.clean	Bio.SeqIO.Interfaces.SequenceWriter-class.html#clean
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_file	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_file
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_header	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_header
Bio.SeqIO.Interfaces.SequenceWriter._get_seq_string	Bio.SeqIO.Interfaces.SequenceWriter-class.html#_get_seq_string
Bio.SeqIO.PhdIO.PhdWriter.write_record	Bio.SeqIO.PhdIO.PhdWriter-class.html#write_record
Bio.SeqIO.PhdIO.PhdWriter.__init__	Bio.SeqIO.PhdIO.PhdWriter-class.html#__init__
Bio.SeqIO.QualityIO.FastqIlluminaWriter	Bio.SeqIO.QualityIO.FastqIlluminaWriter-class.html
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_records	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_records
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_footer	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_footer
Bio.SeqIO.Interfaces.SequenceWriter.clean	Bio.SeqIO.Interfaces.SequenceWriter-class.html#clean
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_file	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_file
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_header	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_header
Bio.SeqIO.Interfaces.SequenceWriter._get_seq_string	Bio.SeqIO.Interfaces.SequenceWriter-class.html#_get_seq_string
Bio.SeqIO.QualityIO.FastqIlluminaWriter.write_record	Bio.SeqIO.QualityIO.FastqIlluminaWriter-class.html#write_record
Bio.SeqIO.Interfaces.SequentialSequenceWriter.__init__	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#__init__
Bio.SeqIO.QualityIO.FastqPhredWriter	Bio.SeqIO.QualityIO.FastqPhredWriter-class.html
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_records	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_records
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_footer	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_footer
Bio.SeqIO.Interfaces.SequenceWriter.clean	Bio.SeqIO.Interfaces.SequenceWriter-class.html#clean
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_file	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_file
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_header	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_header
Bio.SeqIO.Interfaces.SequenceWriter._get_seq_string	Bio.SeqIO.Interfaces.SequenceWriter-class.html#_get_seq_string
Bio.SeqIO.QualityIO.FastqPhredWriter.write_record	Bio.SeqIO.QualityIO.FastqPhredWriter-class.html#write_record
Bio.SeqIO.Interfaces.SequentialSequenceWriter.__init__	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#__init__
Bio.SeqIO.QualityIO.FastqSolexaWriter	Bio.SeqIO.QualityIO.FastqSolexaWriter-class.html
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_records	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_records
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_footer	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_footer
Bio.SeqIO.Interfaces.SequenceWriter.clean	Bio.SeqIO.Interfaces.SequenceWriter-class.html#clean
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_file	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_file
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_header	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_header
Bio.SeqIO.Interfaces.SequenceWriter._get_seq_string	Bio.SeqIO.Interfaces.SequenceWriter-class.html#_get_seq_string
Bio.SeqIO.QualityIO.FastqSolexaWriter.write_record	Bio.SeqIO.QualityIO.FastqSolexaWriter-class.html#write_record
Bio.SeqIO.Interfaces.SequentialSequenceWriter.__init__	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#__init__
Bio.SeqIO.QualityIO.QualPhredWriter	Bio.SeqIO.QualityIO.QualPhredWriter-class.html
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_records	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_records
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_footer	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_footer
Bio.SeqIO.Interfaces.SequenceWriter.clean	Bio.SeqIO.Interfaces.SequenceWriter-class.html#clean
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_file	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_file
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_header	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_header
Bio.SeqIO.Interfaces.SequenceWriter._get_seq_string	Bio.SeqIO.Interfaces.SequenceWriter-class.html#_get_seq_string
Bio.SeqIO.QualityIO.QualPhredWriter.write_record	Bio.SeqIO.QualityIO.QualPhredWriter-class.html#write_record
Bio.SeqIO.QualityIO.QualPhredWriter.__init__	Bio.SeqIO.QualityIO.QualPhredWriter-class.html#__init__
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Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_records	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_records
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_footer	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_footer
Bio.SeqIO.Interfaces.SequenceWriter.clean	Bio.SeqIO.Interfaces.SequenceWriter-class.html#clean
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_file	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_file
Bio.SeqIO.Interfaces.SequentialSequenceWriter.write_header	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#write_header
Bio.SeqIO.Interfaces.SequenceWriter._get_seq_string	Bio.SeqIO.Interfaces.SequenceWriter-class.html#_get_seq_string
Bio.SeqIO.TabIO.TabWriter.write_record	Bio.SeqIO.TabIO.TabWriter-class.html#write_record
Bio.SeqIO.Interfaces.SequentialSequenceWriter.__init__	Bio.SeqIO.Interfaces.SequentialSequenceWriter-class.html#__init__
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Bio.SeqIO._index._IndexedSeqFileDict.__str__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__str__
Bio.SeqIO._index._IndexedSeqFileDict.popitem	Bio.SeqIO._index._IndexedSeqFileDict-class.html#popitem
Bio.SeqIO._index._IndexedSeqFileDict.pop	Bio.SeqIO._index._IndexedSeqFileDict-class.html#pop
Bio.SeqIO._index.AceDict.__init__	Bio.SeqIO._index.AceDict-class.html#__init__
Bio.SeqIO._index._IndexedSeqFileDict.__getitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__getitem__
Bio.SeqIO._index._IndexedSeqFileDict.get	Bio.SeqIO._index._IndexedSeqFileDict-class.html#get
Bio.SeqIO._index._IndexedSeqFileDict.update	Bio.SeqIO._index._IndexedSeqFileDict-class.html#update
Bio.SeqIO._index._IndexedSeqFileDict.__setitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__setitem__
Bio.SeqIO._index._IndexedSeqFileDict.iteritems	Bio.SeqIO._index._IndexedSeqFileDict-class.html#iteritems
Bio.SeqIO._index._IndexedSeqFileDict.copy	Bio.SeqIO._index._IndexedSeqFileDict-class.html#copy
Bio.SeqIO._index._IndexedSeqFileDict._record_key	Bio.SeqIO._index._IndexedSeqFileDict-class.html#_record_key
Bio.SeqIO._index._IndexedSeqFileDict.fromkeys	Bio.SeqIO._index._IndexedSeqFileDict-class.html#fromkeys
Bio.SeqIO._index._IndexedSeqFileDict.items	Bio.SeqIO._index._IndexedSeqFileDict-class.html#items
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Bio.SeqIO._index._IndexedSeqFileDict.values	Bio.SeqIO._index._IndexedSeqFileDict-class.html#values
Bio.SeqIO._index._IndexedSeqFileDict.__repr__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__repr__
Bio.SeqIO._index.EmblDict	Bio.SeqIO._index.EmblDict-class.html
Bio.SeqIO._index._IndexedSeqFileDict.__str__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__str__
Bio.SeqIO._index._IndexedSeqFileDict.popitem	Bio.SeqIO._index._IndexedSeqFileDict-class.html#popitem
Bio.SeqIO._index._IndexedSeqFileDict.pop	Bio.SeqIO._index._IndexedSeqFileDict-class.html#pop
Bio.SeqIO._index.EmblDict.__init__	Bio.SeqIO._index.EmblDict-class.html#__init__
Bio.SeqIO._index._IndexedSeqFileDict.__getitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__getitem__
Bio.SeqIO._index._IndexedSeqFileDict.get	Bio.SeqIO._index._IndexedSeqFileDict-class.html#get
Bio.SeqIO._index._IndexedSeqFileDict.update	Bio.SeqIO._index._IndexedSeqFileDict-class.html#update
Bio.SeqIO._index._IndexedSeqFileDict.__setitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__setitem__
Bio.SeqIO._index._IndexedSeqFileDict.iteritems	Bio.SeqIO._index._IndexedSeqFileDict-class.html#iteritems
Bio.SeqIO._index._IndexedSeqFileDict.copy	Bio.SeqIO._index._IndexedSeqFileDict-class.html#copy
Bio.SeqIO._index._IndexedSeqFileDict._record_key	Bio.SeqIO._index._IndexedSeqFileDict-class.html#_record_key
Bio.SeqIO._index._IndexedSeqFileDict.fromkeys	Bio.SeqIO._index._IndexedSeqFileDict-class.html#fromkeys
Bio.SeqIO._index._IndexedSeqFileDict.items	Bio.SeqIO._index._IndexedSeqFileDict-class.html#items
Bio.SeqIO._index._IndexedSeqFileDict.clear	Bio.SeqIO._index._IndexedSeqFileDict-class.html#clear
Bio.SeqIO._index._IndexedSeqFileDict.values	Bio.SeqIO._index._IndexedSeqFileDict-class.html#values
Bio.SeqIO._index._IndexedSeqFileDict.__repr__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__repr__
Bio.SeqIO._index.FastaDict	Bio.SeqIO._index.FastaDict-class.html
Bio.SeqIO._index._IndexedSeqFileDict.__str__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__str__
Bio.SeqIO._index._IndexedSeqFileDict.popitem	Bio.SeqIO._index._IndexedSeqFileDict-class.html#popitem
Bio.SeqIO._index._IndexedSeqFileDict.pop	Bio.SeqIO._index._IndexedSeqFileDict-class.html#pop
Bio.SeqIO._index.FastaDict.__init__	Bio.SeqIO._index.FastaDict-class.html#__init__
Bio.SeqIO._index._IndexedSeqFileDict.__getitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__getitem__
Bio.SeqIO._index._IndexedSeqFileDict.get	Bio.SeqIO._index._IndexedSeqFileDict-class.html#get
Bio.SeqIO._index._IndexedSeqFileDict.update	Bio.SeqIO._index._IndexedSeqFileDict-class.html#update
Bio.SeqIO._index._IndexedSeqFileDict.__setitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__setitem__
Bio.SeqIO._index._IndexedSeqFileDict.iteritems	Bio.SeqIO._index._IndexedSeqFileDict-class.html#iteritems
Bio.SeqIO._index._IndexedSeqFileDict.copy	Bio.SeqIO._index._IndexedSeqFileDict-class.html#copy
Bio.SeqIO._index._IndexedSeqFileDict._record_key	Bio.SeqIO._index._IndexedSeqFileDict-class.html#_record_key
Bio.SeqIO._index._IndexedSeqFileDict.fromkeys	Bio.SeqIO._index._IndexedSeqFileDict-class.html#fromkeys
Bio.SeqIO._index._IndexedSeqFileDict.items	Bio.SeqIO._index._IndexedSeqFileDict-class.html#items
Bio.SeqIO._index._IndexedSeqFileDict.clear	Bio.SeqIO._index._IndexedSeqFileDict-class.html#clear
Bio.SeqIO._index._IndexedSeqFileDict.values	Bio.SeqIO._index._IndexedSeqFileDict-class.html#values
Bio.SeqIO._index._IndexedSeqFileDict.__repr__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__repr__
Bio.SeqIO._index.FastqIlluminaDict	Bio.SeqIO._index.FastqIlluminaDict-class.html
Bio.SeqIO._index._IndexedSeqFileDict.__str__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__str__
Bio.SeqIO._index._IndexedSeqFileDict.popitem	Bio.SeqIO._index._IndexedSeqFileDict-class.html#popitem
Bio.SeqIO._index._IndexedSeqFileDict.pop	Bio.SeqIO._index._IndexedSeqFileDict-class.html#pop
Bio.SeqIO._index.FastqIlluminaDict.__init__	Bio.SeqIO._index.FastqIlluminaDict-class.html#__init__
Bio.SeqIO._index._IndexedSeqFileDict.__getitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__getitem__
Bio.SeqIO._index._IndexedSeqFileDict.get	Bio.SeqIO._index._IndexedSeqFileDict-class.html#get
Bio.SeqIO._index._IndexedSeqFileDict.update	Bio.SeqIO._index._IndexedSeqFileDict-class.html#update
Bio.SeqIO._index._IndexedSeqFileDict.__setitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__setitem__
Bio.SeqIO._index._IndexedSeqFileDict.iteritems	Bio.SeqIO._index._IndexedSeqFileDict-class.html#iteritems
Bio.SeqIO._index._IndexedSeqFileDict.copy	Bio.SeqIO._index._IndexedSeqFileDict-class.html#copy
Bio.SeqIO._index._IndexedSeqFileDict._record_key	Bio.SeqIO._index._IndexedSeqFileDict-class.html#_record_key
Bio.SeqIO._index._IndexedSeqFileDict.fromkeys	Bio.SeqIO._index._IndexedSeqFileDict-class.html#fromkeys
Bio.SeqIO._index._IndexedSeqFileDict.items	Bio.SeqIO._index._IndexedSeqFileDict-class.html#items
Bio.SeqIO._index._IndexedSeqFileDict.clear	Bio.SeqIO._index._IndexedSeqFileDict-class.html#clear
Bio.SeqIO._index._IndexedSeqFileDict.values	Bio.SeqIO._index._IndexedSeqFileDict-class.html#values
Bio.SeqIO._index._IndexedSeqFileDict.__repr__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__repr__
Bio.SeqIO._index.FastqSangerDict	Bio.SeqIO._index.FastqSangerDict-class.html
Bio.SeqIO._index._IndexedSeqFileDict.__str__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__str__
Bio.SeqIO._index._IndexedSeqFileDict.popitem	Bio.SeqIO._index._IndexedSeqFileDict-class.html#popitem
Bio.SeqIO._index._IndexedSeqFileDict.pop	Bio.SeqIO._index._IndexedSeqFileDict-class.html#pop
Bio.SeqIO._index.FastqSangerDict.__init__	Bio.SeqIO._index.FastqSangerDict-class.html#__init__
Bio.SeqIO._index._IndexedSeqFileDict.__getitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__getitem__
Bio.SeqIO._index._IndexedSeqFileDict.get	Bio.SeqIO._index._IndexedSeqFileDict-class.html#get
Bio.SeqIO._index._IndexedSeqFileDict.update	Bio.SeqIO._index._IndexedSeqFileDict-class.html#update
Bio.SeqIO._index._IndexedSeqFileDict.__setitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__setitem__
Bio.SeqIO._index._IndexedSeqFileDict.iteritems	Bio.SeqIO._index._IndexedSeqFileDict-class.html#iteritems
Bio.SeqIO._index._IndexedSeqFileDict.copy	Bio.SeqIO._index._IndexedSeqFileDict-class.html#copy
Bio.SeqIO._index._IndexedSeqFileDict._record_key	Bio.SeqIO._index._IndexedSeqFileDict-class.html#_record_key
Bio.SeqIO._index._IndexedSeqFileDict.fromkeys	Bio.SeqIO._index._IndexedSeqFileDict-class.html#fromkeys
Bio.SeqIO._index._IndexedSeqFileDict.items	Bio.SeqIO._index._IndexedSeqFileDict-class.html#items
Bio.SeqIO._index._IndexedSeqFileDict.clear	Bio.SeqIO._index._IndexedSeqFileDict-class.html#clear
Bio.SeqIO._index._IndexedSeqFileDict.values	Bio.SeqIO._index._IndexedSeqFileDict-class.html#values
Bio.SeqIO._index._IndexedSeqFileDict.__repr__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__repr__
Bio.SeqIO._index.FastqSolexaDict	Bio.SeqIO._index.FastqSolexaDict-class.html
Bio.SeqIO._index._IndexedSeqFileDict.__str__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__str__
Bio.SeqIO._index._IndexedSeqFileDict.popitem	Bio.SeqIO._index._IndexedSeqFileDict-class.html#popitem
Bio.SeqIO._index._IndexedSeqFileDict.pop	Bio.SeqIO._index._IndexedSeqFileDict-class.html#pop
Bio.SeqIO._index.FastqSolexaDict.__init__	Bio.SeqIO._index.FastqSolexaDict-class.html#__init__
Bio.SeqIO._index._IndexedSeqFileDict.__getitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__getitem__
Bio.SeqIO._index._IndexedSeqFileDict.get	Bio.SeqIO._index._IndexedSeqFileDict-class.html#get
Bio.SeqIO._index._IndexedSeqFileDict.update	Bio.SeqIO._index._IndexedSeqFileDict-class.html#update
Bio.SeqIO._index._IndexedSeqFileDict.__setitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__setitem__
Bio.SeqIO._index._IndexedSeqFileDict.iteritems	Bio.SeqIO._index._IndexedSeqFileDict-class.html#iteritems
Bio.SeqIO._index._IndexedSeqFileDict.copy	Bio.SeqIO._index._IndexedSeqFileDict-class.html#copy
Bio.SeqIO._index._IndexedSeqFileDict._record_key	Bio.SeqIO._index._IndexedSeqFileDict-class.html#_record_key
Bio.SeqIO._index._IndexedSeqFileDict.fromkeys	Bio.SeqIO._index._IndexedSeqFileDict-class.html#fromkeys
Bio.SeqIO._index._IndexedSeqFileDict.items	Bio.SeqIO._index._IndexedSeqFileDict-class.html#items
Bio.SeqIO._index._IndexedSeqFileDict.clear	Bio.SeqIO._index._IndexedSeqFileDict-class.html#clear
Bio.SeqIO._index._IndexedSeqFileDict.values	Bio.SeqIO._index._IndexedSeqFileDict-class.html#values
Bio.SeqIO._index._IndexedSeqFileDict.__repr__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__repr__
Bio.SeqIO._index.GenBankDict	Bio.SeqIO._index.GenBankDict-class.html
Bio.SeqIO._index._IndexedSeqFileDict.__str__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__str__
Bio.SeqIO._index._IndexedSeqFileDict.popitem	Bio.SeqIO._index._IndexedSeqFileDict-class.html#popitem
Bio.SeqIO._index._IndexedSeqFileDict.pop	Bio.SeqIO._index._IndexedSeqFileDict-class.html#pop
Bio.SeqIO._index.GenBankDict.__init__	Bio.SeqIO._index.GenBankDict-class.html#__init__
Bio.SeqIO._index._IndexedSeqFileDict.__getitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__getitem__
Bio.SeqIO._index._IndexedSeqFileDict.get	Bio.SeqIO._index._IndexedSeqFileDict-class.html#get
Bio.SeqIO._index._IndexedSeqFileDict.update	Bio.SeqIO._index._IndexedSeqFileDict-class.html#update
Bio.SeqIO._index._IndexedSeqFileDict.__setitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__setitem__
Bio.SeqIO._index._IndexedSeqFileDict.iteritems	Bio.SeqIO._index._IndexedSeqFileDict-class.html#iteritems
Bio.SeqIO._index._IndexedSeqFileDict.copy	Bio.SeqIO._index._IndexedSeqFileDict-class.html#copy
Bio.SeqIO._index._IndexedSeqFileDict._record_key	Bio.SeqIO._index._IndexedSeqFileDict-class.html#_record_key
Bio.SeqIO._index._IndexedSeqFileDict.fromkeys	Bio.SeqIO._index._IndexedSeqFileDict-class.html#fromkeys
Bio.SeqIO._index._IndexedSeqFileDict.items	Bio.SeqIO._index._IndexedSeqFileDict-class.html#items
Bio.SeqIO._index._IndexedSeqFileDict.clear	Bio.SeqIO._index._IndexedSeqFileDict-class.html#clear
Bio.SeqIO._index._IndexedSeqFileDict.values	Bio.SeqIO._index._IndexedSeqFileDict-class.html#values
Bio.SeqIO._index._IndexedSeqFileDict.__repr__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__repr__
Bio.SeqIO._index.IntelliGeneticsDict	Bio.SeqIO._index.IntelliGeneticsDict-class.html
Bio.SeqIO._index._IndexedSeqFileDict.__str__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__str__
Bio.SeqIO._index._IndexedSeqFileDict.popitem	Bio.SeqIO._index._IndexedSeqFileDict-class.html#popitem
Bio.SeqIO._index._IndexedSeqFileDict.pop	Bio.SeqIO._index._IndexedSeqFileDict-class.html#pop
Bio.SeqIO._index.IntelliGeneticsDict.__init__	Bio.SeqIO._index.IntelliGeneticsDict-class.html#__init__
Bio.SeqIO._index._IndexedSeqFileDict.__getitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__getitem__
Bio.SeqIO._index._IndexedSeqFileDict.get	Bio.SeqIO._index._IndexedSeqFileDict-class.html#get
Bio.SeqIO._index._IndexedSeqFileDict.update	Bio.SeqIO._index._IndexedSeqFileDict-class.html#update
Bio.SeqIO._index._IndexedSeqFileDict.__setitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__setitem__
Bio.SeqIO._index._IndexedSeqFileDict.iteritems	Bio.SeqIO._index._IndexedSeqFileDict-class.html#iteritems
Bio.SeqIO._index._IndexedSeqFileDict.copy	Bio.SeqIO._index._IndexedSeqFileDict-class.html#copy
Bio.SeqIO._index._IndexedSeqFileDict._record_key	Bio.SeqIO._index._IndexedSeqFileDict-class.html#_record_key
Bio.SeqIO._index._IndexedSeqFileDict.fromkeys	Bio.SeqIO._index._IndexedSeqFileDict-class.html#fromkeys
Bio.SeqIO._index._IndexedSeqFileDict.items	Bio.SeqIO._index._IndexedSeqFileDict-class.html#items
Bio.SeqIO._index._IndexedSeqFileDict.clear	Bio.SeqIO._index._IndexedSeqFileDict-class.html#clear
Bio.SeqIO._index._IndexedSeqFileDict.values	Bio.SeqIO._index._IndexedSeqFileDict-class.html#values
Bio.SeqIO._index._IndexedSeqFileDict.__repr__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__repr__
Bio.SeqIO._index.PhdDict	Bio.SeqIO._index.PhdDict-class.html
Bio.SeqIO._index._IndexedSeqFileDict.__str__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__str__
Bio.SeqIO._index._IndexedSeqFileDict.popitem	Bio.SeqIO._index._IndexedSeqFileDict-class.html#popitem
Bio.SeqIO._index._IndexedSeqFileDict.pop	Bio.SeqIO._index._IndexedSeqFileDict-class.html#pop
Bio.SeqIO._index.PhdDict.__init__	Bio.SeqIO._index.PhdDict-class.html#__init__
Bio.SeqIO._index._IndexedSeqFileDict.__getitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__getitem__
Bio.SeqIO._index._IndexedSeqFileDict.get	Bio.SeqIO._index._IndexedSeqFileDict-class.html#get
Bio.SeqIO._index._IndexedSeqFileDict.update	Bio.SeqIO._index._IndexedSeqFileDict-class.html#update
Bio.SeqIO._index._IndexedSeqFileDict.__setitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__setitem__
Bio.SeqIO._index._IndexedSeqFileDict.iteritems	Bio.SeqIO._index._IndexedSeqFileDict-class.html#iteritems
Bio.SeqIO._index._IndexedSeqFileDict.copy	Bio.SeqIO._index._IndexedSeqFileDict-class.html#copy
Bio.SeqIO._index._IndexedSeqFileDict._record_key	Bio.SeqIO._index._IndexedSeqFileDict-class.html#_record_key
Bio.SeqIO._index._IndexedSeqFileDict.fromkeys	Bio.SeqIO._index._IndexedSeqFileDict-class.html#fromkeys
Bio.SeqIO._index._IndexedSeqFileDict.items	Bio.SeqIO._index._IndexedSeqFileDict-class.html#items
Bio.SeqIO._index._IndexedSeqFileDict.clear	Bio.SeqIO._index._IndexedSeqFileDict-class.html#clear
Bio.SeqIO._index._IndexedSeqFileDict.values	Bio.SeqIO._index._IndexedSeqFileDict-class.html#values
Bio.SeqIO._index._IndexedSeqFileDict.__repr__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__repr__
Bio.SeqIO._index.PirDict	Bio.SeqIO._index.PirDict-class.html
Bio.SeqIO._index._IndexedSeqFileDict.__str__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__str__
Bio.SeqIO._index._IndexedSeqFileDict.popitem	Bio.SeqIO._index._IndexedSeqFileDict-class.html#popitem
Bio.SeqIO._index._IndexedSeqFileDict.pop	Bio.SeqIO._index._IndexedSeqFileDict-class.html#pop
Bio.SeqIO._index.PirDict.__init__	Bio.SeqIO._index.PirDict-class.html#__init__
Bio.SeqIO._index._IndexedSeqFileDict.__getitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__getitem__
Bio.SeqIO._index._IndexedSeqFileDict.get	Bio.SeqIO._index._IndexedSeqFileDict-class.html#get
Bio.SeqIO._index._IndexedSeqFileDict.update	Bio.SeqIO._index._IndexedSeqFileDict-class.html#update
Bio.SeqIO._index._IndexedSeqFileDict.__setitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__setitem__
Bio.SeqIO._index._IndexedSeqFileDict.iteritems	Bio.SeqIO._index._IndexedSeqFileDict-class.html#iteritems
Bio.SeqIO._index._IndexedSeqFileDict.copy	Bio.SeqIO._index._IndexedSeqFileDict-class.html#copy
Bio.SeqIO._index._IndexedSeqFileDict._record_key	Bio.SeqIO._index._IndexedSeqFileDict-class.html#_record_key
Bio.SeqIO._index._IndexedSeqFileDict.fromkeys	Bio.SeqIO._index._IndexedSeqFileDict-class.html#fromkeys
Bio.SeqIO._index._IndexedSeqFileDict.items	Bio.SeqIO._index._IndexedSeqFileDict-class.html#items
Bio.SeqIO._index._IndexedSeqFileDict.clear	Bio.SeqIO._index._IndexedSeqFileDict-class.html#clear
Bio.SeqIO._index._IndexedSeqFileDict.values	Bio.SeqIO._index._IndexedSeqFileDict-class.html#values
Bio.SeqIO._index._IndexedSeqFileDict.__repr__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__repr__
Bio.SeqIO._index.QualDict	Bio.SeqIO._index.QualDict-class.html
Bio.SeqIO._index._IndexedSeqFileDict.__str__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__str__
Bio.SeqIO._index._IndexedSeqFileDict.popitem	Bio.SeqIO._index._IndexedSeqFileDict-class.html#popitem
Bio.SeqIO._index._IndexedSeqFileDict.pop	Bio.SeqIO._index._IndexedSeqFileDict-class.html#pop
Bio.SeqIO._index.QualDict.__init__	Bio.SeqIO._index.QualDict-class.html#__init__
Bio.SeqIO._index._IndexedSeqFileDict.__getitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__getitem__
Bio.SeqIO._index._IndexedSeqFileDict.get	Bio.SeqIO._index._IndexedSeqFileDict-class.html#get
Bio.SeqIO._index._IndexedSeqFileDict.update	Bio.SeqIO._index._IndexedSeqFileDict-class.html#update
Bio.SeqIO._index._IndexedSeqFileDict.__setitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__setitem__
Bio.SeqIO._index._IndexedSeqFileDict.iteritems	Bio.SeqIO._index._IndexedSeqFileDict-class.html#iteritems
Bio.SeqIO._index._IndexedSeqFileDict.copy	Bio.SeqIO._index._IndexedSeqFileDict-class.html#copy
Bio.SeqIO._index._IndexedSeqFileDict._record_key	Bio.SeqIO._index._IndexedSeqFileDict-class.html#_record_key
Bio.SeqIO._index._IndexedSeqFileDict.fromkeys	Bio.SeqIO._index._IndexedSeqFileDict-class.html#fromkeys
Bio.SeqIO._index._IndexedSeqFileDict.items	Bio.SeqIO._index._IndexedSeqFileDict-class.html#items
Bio.SeqIO._index._IndexedSeqFileDict.clear	Bio.SeqIO._index._IndexedSeqFileDict-class.html#clear
Bio.SeqIO._index._IndexedSeqFileDict.values	Bio.SeqIO._index._IndexedSeqFileDict-class.html#values
Bio.SeqIO._index._IndexedSeqFileDict.__repr__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__repr__
Bio.SeqIO._index.SwissDict	Bio.SeqIO._index.SwissDict-class.html
Bio.SeqIO._index._IndexedSeqFileDict.__str__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__str__
Bio.SeqIO._index._IndexedSeqFileDict.popitem	Bio.SeqIO._index._IndexedSeqFileDict-class.html#popitem
Bio.SeqIO._index._IndexedSeqFileDict.pop	Bio.SeqIO._index._IndexedSeqFileDict-class.html#pop
Bio.SeqIO._index.SwissDict.__init__	Bio.SeqIO._index.SwissDict-class.html#__init__
Bio.SeqIO._index._IndexedSeqFileDict.__getitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__getitem__
Bio.SeqIO._index._IndexedSeqFileDict.get	Bio.SeqIO._index._IndexedSeqFileDict-class.html#get
Bio.SeqIO._index._IndexedSeqFileDict.update	Bio.SeqIO._index._IndexedSeqFileDict-class.html#update
Bio.SeqIO._index._IndexedSeqFileDict.__setitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__setitem__
Bio.SeqIO._index._IndexedSeqFileDict.iteritems	Bio.SeqIO._index._IndexedSeqFileDict-class.html#iteritems
Bio.SeqIO._index._IndexedSeqFileDict.copy	Bio.SeqIO._index._IndexedSeqFileDict-class.html#copy
Bio.SeqIO._index._IndexedSeqFileDict._record_key	Bio.SeqIO._index._IndexedSeqFileDict-class.html#_record_key
Bio.SeqIO._index._IndexedSeqFileDict.fromkeys	Bio.SeqIO._index._IndexedSeqFileDict-class.html#fromkeys
Bio.SeqIO._index._IndexedSeqFileDict.items	Bio.SeqIO._index._IndexedSeqFileDict-class.html#items
Bio.SeqIO._index._IndexedSeqFileDict.clear	Bio.SeqIO._index._IndexedSeqFileDict-class.html#clear
Bio.SeqIO._index._IndexedSeqFileDict.values	Bio.SeqIO._index._IndexedSeqFileDict-class.html#values
Bio.SeqIO._index._IndexedSeqFileDict.__repr__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__repr__
Bio.SeqIO._index.TabDict	Bio.SeqIO._index.TabDict-class.html
Bio.SeqIO._index._IndexedSeqFileDict.__str__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__str__
Bio.SeqIO._index._IndexedSeqFileDict.popitem	Bio.SeqIO._index._IndexedSeqFileDict-class.html#popitem
Bio.SeqIO._index._IndexedSeqFileDict.pop	Bio.SeqIO._index._IndexedSeqFileDict-class.html#pop
Bio.SeqIO._index.TabDict.__init__	Bio.SeqIO._index.TabDict-class.html#__init__
Bio.SeqIO._index._IndexedSeqFileDict.__getitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__getitem__
Bio.SeqIO._index._IndexedSeqFileDict.get	Bio.SeqIO._index._IndexedSeqFileDict-class.html#get
Bio.SeqIO._index._IndexedSeqFileDict.update	Bio.SeqIO._index._IndexedSeqFileDict-class.html#update
Bio.SeqIO._index._IndexedSeqFileDict.__setitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__setitem__
Bio.SeqIO._index._IndexedSeqFileDict.iteritems	Bio.SeqIO._index._IndexedSeqFileDict-class.html#iteritems
Bio.SeqIO._index._IndexedSeqFileDict.copy	Bio.SeqIO._index._IndexedSeqFileDict-class.html#copy
Bio.SeqIO._index._IndexedSeqFileDict._record_key	Bio.SeqIO._index._IndexedSeqFileDict-class.html#_record_key
Bio.SeqIO._index._IndexedSeqFileDict.fromkeys	Bio.SeqIO._index._IndexedSeqFileDict-class.html#fromkeys
Bio.SeqIO._index._IndexedSeqFileDict.items	Bio.SeqIO._index._IndexedSeqFileDict-class.html#items
Bio.SeqIO._index._IndexedSeqFileDict.clear	Bio.SeqIO._index._IndexedSeqFileDict-class.html#clear
Bio.SeqIO._index._IndexedSeqFileDict.values	Bio.SeqIO._index._IndexedSeqFileDict-class.html#values
Bio.SeqIO._index._IndexedSeqFileDict.__repr__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__repr__
Bio.SeqIO._index._FastqSeqFileDict	Bio.SeqIO._index._FastqSeqFileDict-class.html
Bio.SeqIO._index._IndexedSeqFileDict.__str__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__str__
Bio.SeqIO._index._IndexedSeqFileDict.popitem	Bio.SeqIO._index._IndexedSeqFileDict-class.html#popitem
Bio.SeqIO._index._IndexedSeqFileDict.pop	Bio.SeqIO._index._IndexedSeqFileDict-class.html#pop
Bio.SeqIO._index._FastqSeqFileDict.__init__	Bio.SeqIO._index._FastqSeqFileDict-class.html#__init__
Bio.SeqIO._index._IndexedSeqFileDict.__getitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__getitem__
Bio.SeqIO._index._IndexedSeqFileDict.get	Bio.SeqIO._index._IndexedSeqFileDict-class.html#get
Bio.SeqIO._index._IndexedSeqFileDict.update	Bio.SeqIO._index._IndexedSeqFileDict-class.html#update
Bio.SeqIO._index._IndexedSeqFileDict.__setitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__setitem__
Bio.SeqIO._index._IndexedSeqFileDict.iteritems	Bio.SeqIO._index._IndexedSeqFileDict-class.html#iteritems
Bio.SeqIO._index._IndexedSeqFileDict.copy	Bio.SeqIO._index._IndexedSeqFileDict-class.html#copy
Bio.SeqIO._index._IndexedSeqFileDict._record_key	Bio.SeqIO._index._IndexedSeqFileDict-class.html#_record_key
Bio.SeqIO._index._IndexedSeqFileDict.fromkeys	Bio.SeqIO._index._IndexedSeqFileDict-class.html#fromkeys
Bio.SeqIO._index._IndexedSeqFileDict.items	Bio.SeqIO._index._IndexedSeqFileDict-class.html#items
Bio.SeqIO._index._IndexedSeqFileDict.clear	Bio.SeqIO._index._IndexedSeqFileDict-class.html#clear
Bio.SeqIO._index._IndexedSeqFileDict.values	Bio.SeqIO._index._IndexedSeqFileDict-class.html#values
Bio.SeqIO._index._IndexedSeqFileDict.__repr__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__repr__
Bio.SeqIO._index._IndexedSeqFileDict	Bio.SeqIO._index._IndexedSeqFileDict-class.html
Bio.SeqIO._index._IndexedSeqFileDict.__str__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__str__
Bio.SeqIO._index._IndexedSeqFileDict.iteritems	Bio.SeqIO._index._IndexedSeqFileDict-class.html#iteritems
Bio.SeqIO._index._IndexedSeqFileDict.pop	Bio.SeqIO._index._IndexedSeqFileDict-class.html#pop
Bio.SeqIO._index._IndexedSeqFileDict.__init__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__init__
Bio.SeqIO._index._IndexedSeqFileDict.__getitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__getitem__
Bio.SeqIO._index._IndexedSeqFileDict.get	Bio.SeqIO._index._IndexedSeqFileDict-class.html#get
Bio.SeqIO._index._IndexedSeqFileDict.update	Bio.SeqIO._index._IndexedSeqFileDict-class.html#update
Bio.SeqIO._index._IndexedSeqFileDict.__setitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__setitem__
Bio.SeqIO._index._IndexedSeqFileDict.popitem	Bio.SeqIO._index._IndexedSeqFileDict-class.html#popitem
Bio.SeqIO._index._IndexedSeqFileDict.copy	Bio.SeqIO._index._IndexedSeqFileDict-class.html#copy
Bio.SeqIO._index._IndexedSeqFileDict._record_key	Bio.SeqIO._index._IndexedSeqFileDict-class.html#_record_key
Bio.SeqIO._index._IndexedSeqFileDict.fromkeys	Bio.SeqIO._index._IndexedSeqFileDict-class.html#fromkeys
Bio.SeqIO._index._IndexedSeqFileDict.items	Bio.SeqIO._index._IndexedSeqFileDict-class.html#items
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Bio.SeqIO._index._IndexedSeqFileDict.values	Bio.SeqIO._index._IndexedSeqFileDict-class.html#values
Bio.SeqIO._index._IndexedSeqFileDict.__repr__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__repr__
Bio.SeqIO._index._SequentialSeqFileDict	Bio.SeqIO._index._SequentialSeqFileDict-class.html
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Bio.SeqIO._index._IndexedSeqFileDict.iteritems	Bio.SeqIO._index._IndexedSeqFileDict-class.html#iteritems
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Bio.SeqIO._index._SequentialSeqFileDict.__init__	Bio.SeqIO._index._SequentialSeqFileDict-class.html#__init__
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Bio.SeqIO._index._IndexedSeqFileDict.get	Bio.SeqIO._index._IndexedSeqFileDict-class.html#get
Bio.SeqIO._index._IndexedSeqFileDict.update	Bio.SeqIO._index._IndexedSeqFileDict-class.html#update
Bio.SeqIO._index._IndexedSeqFileDict.__setitem__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__setitem__
Bio.SeqIO._index._IndexedSeqFileDict.popitem	Bio.SeqIO._index._IndexedSeqFileDict-class.html#popitem
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Bio.SeqIO._index._IndexedSeqFileDict._record_key	Bio.SeqIO._index._IndexedSeqFileDict-class.html#_record_key
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Bio.SeqIO._index._IndexedSeqFileDict.values	Bio.SeqIO._index._IndexedSeqFileDict-class.html#values
Bio.SeqIO._index._IndexedSeqFileDict.__repr__	Bio.SeqIO._index._IndexedSeqFileDict-class.html#__repr__
Bio.SeqRecord.SeqRecord	Bio.SeqRecord.SeqRecord-class.html
Bio.SeqRecord.SeqRecord._set_seq	Bio.SeqRecord.SeqRecord-class.html#_set_seq
Bio.SeqRecord.SeqRecord.seq	Bio.SeqRecord.SeqRecord-class.html#seq
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Bio.SeqRecord.SeqRecord.format	Bio.SeqRecord.SeqRecord-class.html#format
Bio.SeqRecord.SeqRecord._set_per_letter_annotations	Bio.SeqRecord.SeqRecord-class.html#_set_per_letter_annotations
Bio.SeqRecord.SeqRecord.__iter__	Bio.SeqRecord.SeqRecord-class.html#__iter__
Bio.SeqRecord.SeqRecord.letter_annotations	Bio.SeqRecord.SeqRecord-class.html#letter_annotations
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Bio.SeqRecord.SeqRecord.__repr__	Bio.SeqRecord.SeqRecord-class.html#__repr__
Bio.SeqRecord._RestrictedDict	Bio.SeqRecord._RestrictedDict-class.html
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Bio.SeqRecord._RestrictedDict.update	Bio.SeqRecord._RestrictedDict-class.html#update
Bio.SeqRecord._RestrictedDict.__setitem__	Bio.SeqRecord._RestrictedDict-class.html#__setitem__
Bio.SeqUtils.CodonUsage.CodonAdaptationIndex	Bio.SeqUtils.CodonUsage.CodonAdaptationIndex-class.html
Bio.SeqUtils.CodonUsage.CodonAdaptationIndex.print_index	Bio.SeqUtils.CodonUsage.CodonAdaptationIndex-class.html#print_index
Bio.SeqUtils.CodonUsage.CodonAdaptationIndex.generate_index	Bio.SeqUtils.CodonUsage.CodonAdaptationIndex-class.html#generate_index
Bio.SeqUtils.CodonUsage.CodonAdaptationIndex.cai_for_gene	Bio.SeqUtils.CodonUsage.CodonAdaptationIndex-class.html#cai_for_gene
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Bio.SeqUtils.CodonUsage.CodonAdaptationIndex.__init__	Bio.SeqUtils.CodonUsage.CodonAdaptationIndex-class.html#__init__
Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint	Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint-class.html
Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint.pi	Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint-class.html#pi
Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint._chargeR	Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint-class.html#_chargeR
Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint._select_charged	Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint-class.html#_select_charged
Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint.__init__	Bio.SeqUtils.IsoelectricPoint.IsoelectricPoint-class.html#__init__
Bio.SeqUtils.MissingTable	Bio.SeqUtils.MissingTable-class.html
Bio.SeqUtils.MissingTable.__init__	Bio.SeqUtils.MissingTable-class.html#__init__
Bio.SeqUtils.MissingTable.get	Bio.SeqUtils.MissingTable-class.html#get
Bio.SeqUtils.ProtParam.ProteinAnalysis	Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html
Bio.SeqUtils.ProtParam.ProteinAnalysis.count_amino_acids	Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#count_amino_acids
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Bio.SeqUtils.ProtParam.ProteinAnalysis.gravy	Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#gravy
Bio.SeqUtils.ProtParam.ProteinAnalysis.protein_scale	Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#protein_scale
Bio.SeqUtils.ProtParam.ProteinAnalysis.isoelectric_point	Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#isoelectric_point
Bio.SeqUtils.ProtParam.ProteinAnalysis.instability_index	Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#instability_index
Bio.SeqUtils.ProtParam.ProteinAnalysis.molecular_weight	Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#molecular_weight
Bio.SeqUtils.ProtParam.ProteinAnalysis.flexibility	Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#flexibility
Bio.SeqUtils.ProtParam.ProteinAnalysis.__init__	Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#__init__
Bio.SeqUtils.ProtParam.ProteinAnalysis.get_amino_acids_percent	Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#get_amino_acids_percent
Bio.SeqUtils.ProtParam.ProteinAnalysis.aromaticity	Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#aromaticity
Bio.SeqUtils.ProtParam.ProteinAnalysis._weight_list	Bio.SeqUtils.ProtParam.ProteinAnalysis-class.html#_weight_list
Bio.SeqUtils.ProteinX	Bio.SeqUtils.ProteinX-class.html
Bio.Alphabet.Alphabet.contains	Bio.Alphabet.Alphabet-class.html#contains
Bio.SeqUtils.ProteinX.letters	Bio.SeqUtils.ProteinX-class.html#letters
Bio.Alphabet.Alphabet.__repr__	Bio.Alphabet.Alphabet-class.html#__repr__
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Bio.Sequencing.Ace.ACEFileRecord	Bio.Sequencing.Ace.ACEFileRecord-class.html
Bio.Sequencing.Ace.ACEFileRecord.sort	Bio.Sequencing.Ace.ACEFileRecord-class.html#sort
Bio.Sequencing.Ace.ACEFileRecord.__init__	Bio.Sequencing.Ace.ACEFileRecord-class.html#__init__
Bio.Sequencing.Ace.Contig	Bio.Sequencing.Ace.Contig-class.html
Bio.Sequencing.Ace.Contig.__init__	Bio.Sequencing.Ace.Contig-class.html#__init__
Bio.Sequencing.Ace.Reads	Bio.Sequencing.Ace.Reads-class.html
Bio.Sequencing.Ace.Reads.__init__	Bio.Sequencing.Ace.Reads-class.html#__init__
Bio.Sequencing.Ace.af	Bio.Sequencing.Ace.af-class.html
Bio.Sequencing.Ace.af.__init__	Bio.Sequencing.Ace.af-class.html#__init__
Bio.Sequencing.Ace.bs	Bio.Sequencing.Ace.bs-class.html
Bio.Sequencing.Ace.bs.__init__	Bio.Sequencing.Ace.bs-class.html#__init__
Bio.Sequencing.Ace.ct	Bio.Sequencing.Ace.ct-class.html
Bio.Sequencing.Ace.ct.__init__	Bio.Sequencing.Ace.ct-class.html#__init__
Bio.Sequencing.Ace.ds	Bio.Sequencing.Ace.ds-class.html
Bio.Sequencing.Ace.ds.__init__	Bio.Sequencing.Ace.ds-class.html#__init__
Bio.Sequencing.Ace.qa	Bio.Sequencing.Ace.qa-class.html
Bio.Sequencing.Ace.qa.__init__	Bio.Sequencing.Ace.qa-class.html#__init__
Bio.Sequencing.Ace.rd	Bio.Sequencing.Ace.rd-class.html
Bio.Sequencing.Ace.rd.__init__	Bio.Sequencing.Ace.rd-class.html#__init__
Bio.Sequencing.Ace.rt	Bio.Sequencing.Ace.rt-class.html
Bio.Sequencing.Ace.rt.__init__	Bio.Sequencing.Ace.rt-class.html#__init__
Bio.Sequencing.Ace.wa	Bio.Sequencing.Ace.wa-class.html
Bio.Sequencing.Ace.wa.__init__	Bio.Sequencing.Ace.wa-class.html#__init__
Bio.Sequencing.Ace.wr	Bio.Sequencing.Ace.wr-class.html
Bio.Sequencing.Ace.wr.__init__	Bio.Sequencing.Ace.wr-class.html#__init__
Bio.Sequencing.Applications._Novoalign.NovoalignCommandline	Bio.Sequencing.Applications._Novoalign.NovoalignCommandline-class.html
Bio.Application.AbstractCommandline._validate	Bio.Application.AbstractCommandline-class.html#_validate
Bio.Application.AbstractCommandline.__str__	Bio.Application.AbstractCommandline-class.html#__str__
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Bio.Application.AbstractCommandline._check_value	Bio.Application.AbstractCommandline-class.html#_check_value
Bio.Application.AbstractCommandline._clear_parameter	Bio.Application.AbstractCommandline-class.html#_clear_parameter
Bio.Application.AbstractCommandline._get_parameter	Bio.Application.AbstractCommandline-class.html#_get_parameter
Bio.Sequencing.Applications._Novoalign.NovoalignCommandline.__init__	Bio.Sequencing.Applications._Novoalign.NovoalignCommandline-class.html#__init__
Bio.Application.AbstractCommandline.set_parameter	Bio.Application.AbstractCommandline-class.html#set_parameter
Bio.Sequencing.Phd.Record	Bio.Sequencing.Phd.Record-class.html
Bio.Sequencing.Phd.Record.__init__	Bio.Sequencing.Phd.Record-class.html#__init__
Bio.SubsMat.AcceptedReplacementsMatrix	Bio.SubsMat.AcceptedReplacementsMatrix-class.html
Bio.SubsMat.SeqMat.__str__	Bio.SubsMat.SeqMat-class.html#__str__
Bio.SubsMat.SeqMat.__init__	Bio.SubsMat.SeqMat-class.html#__init__
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Bio.SubsMat.SeqMat.__add__	Bio.SubsMat.SeqMat-class.html#__add__
Bio.SubsMat.SeqMat._alphabet_from_matrix	Bio.SubsMat.SeqMat-class.html#_alphabet_from_matrix
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Bio.SubsMat.SeqMat._correct_matrix	Bio.SubsMat.SeqMat-class.html#_correct_matrix
Bio.SubsMat.ExpectedFrequencyMatrix	Bio.SubsMat.ExpectedFrequencyMatrix-class.html
Bio.SubsMat.SeqMat.__str__	Bio.SubsMat.SeqMat-class.html#__str__
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Bio.SubsMat.SeqMat.__add__	Bio.SubsMat.SeqMat-class.html#__add__
Bio.SubsMat.SeqMat._alphabet_from_matrix	Bio.SubsMat.SeqMat-class.html#_alphabet_from_matrix
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Bio.SubsMat.SeqMat._correct_matrix	Bio.SubsMat.SeqMat-class.html#_correct_matrix
Bio.SubsMat.FreqTable.FreqTable	Bio.SubsMat.FreqTable.FreqTable-class.html
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Bio.SubsMat.FreqTable.FreqTable._alphabet_from_input	Bio.SubsMat.FreqTable.FreqTable-class.html#_alphabet_from_input
Bio.SubsMat.LogOddsMatrix	Bio.SubsMat.LogOddsMatrix-class.html
Bio.SubsMat.SeqMat.__str__	Bio.SubsMat.SeqMat-class.html#__str__
Bio.SubsMat.SeqMat.__init__	Bio.SubsMat.SeqMat-class.html#__init__
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Bio.SubsMat.SeqMat._full_to_half	Bio.SubsMat.SeqMat-class.html#_full_to_half
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Bio.SubsMat.SeqMat.__add__	Bio.SubsMat.SeqMat-class.html#__add__
Bio.SubsMat.SeqMat._alphabet_from_matrix	Bio.SubsMat.SeqMat-class.html#_alphabet_from_matrix
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Bio.SubsMat.SeqMat.__mul__	Bio.SubsMat.SeqMat-class.html#__mul__
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Bio.SubsMat.SeqMat._correct_matrix	Bio.SubsMat.SeqMat-class.html#_correct_matrix
Bio.SubsMat.ObservedFrequencyMatrix	Bio.SubsMat.ObservedFrequencyMatrix-class.html
Bio.SubsMat.SeqMat.__str__	Bio.SubsMat.SeqMat-class.html#__str__
Bio.SubsMat.SeqMat.__init__	Bio.SubsMat.SeqMat-class.html#__init__
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Bio.SubsMat.SeqMat._full_to_half	Bio.SubsMat.SeqMat-class.html#_full_to_half
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Bio.SubsMat.SeqMat.__add__	Bio.SubsMat.SeqMat-class.html#__add__
Bio.SubsMat.SeqMat._alphabet_from_matrix	Bio.SubsMat.SeqMat-class.html#_alphabet_from_matrix
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Bio.SubsMat.SeqMat	Bio.SubsMat.SeqMat-class.html
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Bio.SubsMat.SeqMat.__init__	Bio.SubsMat.SeqMat-class.html#__init__
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Bio.SubsMat.SeqMat.__add__	Bio.SubsMat.SeqMat-class.html#__add__
Bio.SubsMat.SeqMat._alphabet_from_matrix	Bio.SubsMat.SeqMat-class.html#_alphabet_from_matrix
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Bio.SubsMat.SubstitutionMatrix.calculate_relative_entropy	Bio.SubsMat.SubstitutionMatrix-class.html#calculate_relative_entropy
Bio.SubsMat.SeqMat.__init__	Bio.SubsMat.SeqMat-class.html#__init__
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Bio.SubsMat.SeqMat.print_full_mat	Bio.SubsMat.SeqMat-class.html#print_full_mat
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Bio.SubsMat.SeqMat._alphabet_from_matrix	Bio.SubsMat.SeqMat-class.html#_alphabet_from_matrix
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Bio.SwissProt.KeyWList.Record	Bio.SwissProt.KeyWList.Record-class.html
Bio.SwissProt.KeyWList.Record.__init__	Bio.SwissProt.KeyWList.Record-class.html#__init__
Bio.SwissProt.Record	Bio.SwissProt.Record-class.html
Bio.SwissProt.Record.__init__	Bio.SwissProt.Record-class.html#__init__
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Bio.SwissProt.Reference.__init__	Bio.SwissProt.Reference-class.html#__init__
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Bio.SwissProt.SProt.Dictionary.keys	Bio.SwissProt.SProt.Dictionary-class.html#keys
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Bio.SwissProt.SProt.RecordParser	Bio.SwissProt.SProt.RecordParser-class.html
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Bio.SwissProt.SProt.Reference.__init__	Bio.SwissProt.SProt.Reference-class.html#__init__
Bio.SwissProt.SProt.SequenceParser	Bio.SwissProt.SProt.SequenceParser-class.html
Bio.SwissProt.SProt.SequenceParser.parse	Bio.SwissProt.SProt.SequenceParser-class.html#parse
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Bio.SwissProt.SProt.SequenceParser.__init__	Bio.SwissProt.SProt.SequenceParser-class.html#__init__
Bio.SwissProt.SProt._RecordConsumer	Bio.SwissProt.SProt._RecordConsumer-class.html
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Bio.SwissProt.SProt._Scanner._scan_sequence_data	Bio.SwissProt.SProt._Scanner-class.html#_scan_sequence_data
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Bio.SwissProt.SProt._SequenceConsumer	Bio.SwissProt.SProt._SequenceConsumer-class.html
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Bio.SwissProt.SProt._SequenceConsumer.accession	Bio.SwissProt.SProt._SequenceConsumer-class.html#accession
Bio.SwissProt.SProt._SequenceConsumer.database_cross_reference	Bio.SwissProt.SProt._SequenceConsumer-class.html#database_cross_reference
Bio.SwissProt.SProt._SequenceConsumer.organism_species	Bio.SwissProt.SProt._SequenceConsumer-class.html#organism_species
Bio.SwissProt.SProt._SequenceConsumer.taxonomy_id	Bio.SwissProt.SProt._SequenceConsumer-class.html#taxonomy_id
Bio.SwissProt.SProt._SequenceConsumer.__init__	Bio.SwissProt.SProt._SequenceConsumer-class.html#__init__
Bio.SwissProt.SProt._SequenceConsumer.sequence_data	Bio.SwissProt.SProt._SequenceConsumer-class.html#sequence_data
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Bio.SwissProt.SProt._SequenceConsumer.identification	Bio.SwissProt.SProt._SequenceConsumer-class.html#identification
Bio.SwissProt.SProt._SequenceConsumer.reference_cross_reference	Bio.SwissProt.SProt._SequenceConsumer-class.html#reference_cross_reference
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Bio.SwissProt.SProt._SequenceConsumer.reference_location	Bio.SwissProt.SProt._SequenceConsumer-class.html#reference_location
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Bio.SwissProt.SProt._SequenceConsumer.end_record	Bio.SwissProt.SProt._SequenceConsumer-class.html#end_record
Bio.SwissProt.SProt._SequenceConsumer.organism_host	Bio.SwissProt.SProt._SequenceConsumer-class.html#organism_host
Bio.SwissProt.SProt._SequenceConsumer.gene_name	Bio.SwissProt.SProt._SequenceConsumer-class.html#gene_name
Bio.Transcribe.Transcribe	Bio.Transcribe.Transcribe-class.html
Bio.Transcribe.Transcribe.back_transcribe	Bio.Transcribe.Transcribe-class.html#back_transcribe
Bio.Transcribe.Transcribe.transcribe	Bio.Transcribe.Transcribe-class.html#transcribe
Bio.Transcribe.Transcribe.__init__	Bio.Transcribe.Transcribe-class.html#__init__
Bio.Translate.Translator	Bio.Translate.Translator-class.html
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Bio.Translate.Translator.translate	Bio.Translate.Translator-class.html#translate
Bio.Translate.Translator.__init__	Bio.Translate.Translator-class.html#__init__
Bio.UniGene.Iterator	Bio.UniGene.Iterator-class.html
Bio.UniGene.Iterator.__iter__	Bio.UniGene.Iterator-class.html#__iter__
Bio.UniGene.Iterator.__init__	Bio.UniGene.Iterator-class.html#__init__
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Bio.UniGene.ProtsimLine	Bio.UniGene.ProtsimLine-class.html
Bio.UniGene.ProtsimLine._init_from_text	Bio.UniGene.ProtsimLine-class.html#_init_from_text
Bio.UniGene.ProtsimLine.__repr__	Bio.UniGene.ProtsimLine-class.html#__repr__
Bio.UniGene.ProtsimLine.__init__	Bio.UniGene.ProtsimLine-class.html#__init__
Bio.UniGene.Record	Bio.UniGene.Record-class.html
Bio.UniGene.Record.__repr__	Bio.UniGene.Record-class.html#__repr__
Bio.UniGene.Record.__init__	Bio.UniGene.Record-class.html#__init__
Bio.UniGene.RecordParser	Bio.UniGene.RecordParser-class.html
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Bio.UniGene.RecordParser.__init__	Bio.UniGene.RecordParser-class.html#__init__
Bio.UniGene.STSLine	Bio.UniGene.STSLine-class.html
Bio.UniGene.STSLine._init_from_text	Bio.UniGene.STSLine-class.html#_init_from_text
Bio.UniGene.STSLine.__repr__	Bio.UniGene.STSLine-class.html#__repr__
Bio.UniGene.STSLine.__init__	Bio.UniGene.STSLine-class.html#__init__
Bio.UniGene.SequenceLine	Bio.UniGene.SequenceLine-class.html
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Bio.UniGene.SequenceLine.__init__	Bio.UniGene.SequenceLine-class.html#__init__
Bio.UniGene.UnigeneProtsimRecord	Bio.UniGene.UnigeneProtsimRecord-class.html
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Bio.UniGene.UnigeneProtsimRecord.__init__	Bio.UniGene.UnigeneProtsimRecord-class.html#__init__
Bio.UniGene.UnigeneRecord	Bio.UniGene.UnigeneRecord-class.html
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Bio.UniGene.UnigeneRecord.__init__	Bio.UniGene.UnigeneRecord-class.html#__init__
Bio.UniGene.UnigeneSTSRecord	Bio.UniGene.UnigeneSTSRecord-class.html
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Bio.UniGene.UnigeneSTSRecord.__repr__	Bio.UniGene.UnigeneSTSRecord-class.html#__repr__
Bio.UniGene.UnigeneSTSRecord.__init__	Bio.UniGene.UnigeneSTSRecord-class.html#__init__
Bio.UniGene.UnigeneSequenceRecord	Bio.UniGene.UnigeneSequenceRecord-class.html
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Bio.UniGene.UnigeneSequenceRecord.__repr__	Bio.UniGene.UnigeneSequenceRecord-class.html#__repr__
Bio.UniGene.UnigeneSequenceRecord.__init__	Bio.UniGene.UnigeneSequenceRecord-class.html#__init__
Bio.UniGene._RecordConsumer	Bio.UniGene._RecordConsumer-class.html
Bio.UniGene._RecordConsumer.TITLE	Bio.UniGene._RecordConsumer-class.html#TITLE
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Bio.WWW.RequestLimiter.__init__	Bio.WWW.RequestLimiter-class.html#__init__
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Bio.kNN.kNN	Bio.kNN.kNN-class.html
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Bio.pairwise2.affine_penalty.__init__	Bio.pairwise2.affine_penalty-class.html#__init__
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Bio.pairwise2.dictionary_match.__init__	Bio.pairwise2.dictionary_match-class.html#__init__
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Bio.pairwise2.identity_match.__init__	Bio.pairwise2.identity_match-class.html#__init__
BioSQL.BioSeq.DBSeq	BioSQL.BioSeq.DBSeq-class.html
Bio.Seq.Seq.transcribe	Bio.Seq.Seq-class.html#transcribe
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BioSQL.BioSeq.DBSeqRecord.__del_annotations	BioSQL.BioSeq.DBSeqRecord-class.html#__del_annotations
BioSQL.BioSeqDatabase.Adaptor	BioSQL.BioSeqDatabase.Adaptor-class.html
BioSQL.BioSeqDatabase.Adaptor.autocommit	BioSQL.BioSeqDatabase.Adaptor-class.html#autocommit
BioSQL.BioSeqDatabase.Adaptor.get_subseq_as_string	BioSQL.BioSeqDatabase.Adaptor-class.html#get_subseq_as_string
BioSQL.BioSeqDatabase.Adaptor.execute	BioSQL.BioSeqDatabase.Adaptor-class.html#execute
BioSQL.BioSeqDatabase.Adaptor.execute_and_fetchall	BioSQL.BioSeqDatabase.Adaptor-class.html#execute_and_fetchall
BioSQL.BioSeqDatabase.Adaptor.rollback	BioSQL.BioSeqDatabase.Adaptor-class.html#rollback
BioSQL.BioSeqDatabase.Adaptor.list_biodatabase_names	BioSQL.BioSeqDatabase.Adaptor-class.html#list_biodatabase_names
BioSQL.BioSeqDatabase.Adaptor.fetch_seqid_by_identifier	BioSQL.BioSeqDatabase.Adaptor-class.html#fetch_seqid_by_identifier
BioSQL.BioSeqDatabase.Adaptor.commit	BioSQL.BioSeqDatabase.Adaptor-class.html#commit
BioSQL.BioSeqDatabase.Adaptor.execute_and_fetch_col0	BioSQL.BioSeqDatabase.Adaptor-class.html#execute_and_fetch_col0
BioSQL.BioSeqDatabase.Adaptor.fetch_seqid_by_version	BioSQL.BioSeqDatabase.Adaptor-class.html#fetch_seqid_by_version
BioSQL.BioSeqDatabase.Adaptor.last_id	BioSQL.BioSeqDatabase.Adaptor-class.html#last_id
BioSQL.BioSeqDatabase.Adaptor.fetch_seqids_by_accession	BioSQL.BioSeqDatabase.Adaptor-class.html#fetch_seqids_by_accession
BioSQL.BioSeqDatabase.Adaptor.fetch_seqid_by_display_id	BioSQL.BioSeqDatabase.Adaptor-class.html#fetch_seqid_by_display_id
BioSQL.BioSeqDatabase.Adaptor.list_bioentry_display_ids	BioSQL.BioSeqDatabase.Adaptor-class.html#list_bioentry_display_ids
BioSQL.BioSeqDatabase.Adaptor.fetch_dbid_by_dbname	BioSQL.BioSeqDatabase.Adaptor-class.html#fetch_dbid_by_dbname
BioSQL.BioSeqDatabase.Adaptor.execute_one	BioSQL.BioSeqDatabase.Adaptor-class.html#execute_one
BioSQL.BioSeqDatabase.Adaptor.fetch_seqid_by_accession	BioSQL.BioSeqDatabase.Adaptor-class.html#fetch_seqid_by_accession
BioSQL.BioSeqDatabase.Adaptor.close	BioSQL.BioSeqDatabase.Adaptor-class.html#close
BioSQL.BioSeqDatabase.Adaptor.list_any_ids	BioSQL.BioSeqDatabase.Adaptor-class.html#list_any_ids
BioSQL.BioSeqDatabase.Adaptor.__init__	BioSQL.BioSeqDatabase.Adaptor-class.html#__init__
BioSQL.BioSeqDatabase.Adaptor.list_bioentry_ids	BioSQL.BioSeqDatabase.Adaptor-class.html#list_bioentry_ids
BioSQL.BioSeqDatabase.BioSeqDatabase	BioSQL.BioSeqDatabase.BioSeqDatabase-class.html
BioSQL.BioSeqDatabase.BioSeqDatabase.get_Seqs_by_acc	BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#get_Seqs_by_acc
BioSQL.BioSeqDatabase.BioSeqDatabase.load	BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#load
BioSQL.BioSeqDatabase.BioSeqDatabase.get_Seq_by_ver	BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#get_Seq_by_ver
BioSQL.BioSeqDatabase.BioSeqDatabase.__getitem__	BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#__getitem__
BioSQL.BioSeqDatabase.BioSeqDatabase.get_PrimarySeq_stream	BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#get_PrimarySeq_stream
BioSQL.BioSeqDatabase.BioSeqDatabase.get_all_primary_ids	BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#get_all_primary_ids
BioSQL.BioSeqDatabase.BioSeqDatabase.keys	BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#keys
BioSQL.BioSeqDatabase.BioSeqDatabase.items	BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#items
BioSQL.BioSeqDatabase.BioSeqDatabase.get_Seq_by_acc	BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#get_Seq_by_acc
BioSQL.BioSeqDatabase.BioSeqDatabase.values	BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#values
BioSQL.BioSeqDatabase.BioSeqDatabase.__repr__	BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#__repr__
BioSQL.BioSeqDatabase.BioSeqDatabase.get_Seq_by_id	BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#get_Seq_by_id
BioSQL.BioSeqDatabase.BioSeqDatabase.lookup	BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#lookup
BioSQL.BioSeqDatabase.BioSeqDatabase.get_Seq_by_primary_id	BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#get_Seq_by_primary_id
BioSQL.BioSeqDatabase.BioSeqDatabase.__init__	BioSQL.BioSeqDatabase.BioSeqDatabase-class.html#__init__
BioSQL.BioSeqDatabase.DBServer	BioSQL.BioSeqDatabase.DBServer-class.html
BioSQL.BioSeqDatabase.DBServer.rollback	BioSQL.BioSeqDatabase.DBServer-class.html#rollback
BioSQL.BioSeqDatabase.DBServer.__getitem__	BioSQL.BioSeqDatabase.DBServer-class.html#__getitem__
BioSQL.BioSeqDatabase.DBServer.keys	BioSQL.BioSeqDatabase.DBServer-class.html#keys
BioSQL.BioSeqDatabase.DBServer.items	BioSQL.BioSeqDatabase.DBServer-class.html#items
BioSQL.BioSeqDatabase.DBServer.commit	BioSQL.BioSeqDatabase.DBServer-class.html#commit
BioSQL.BioSeqDatabase.DBServer.new_database	BioSQL.BioSeqDatabase.DBServer-class.html#new_database
BioSQL.BioSeqDatabase.DBServer.load_database_sql	BioSQL.BioSeqDatabase.DBServer-class.html#load_database_sql
BioSQL.BioSeqDatabase.DBServer.values	BioSQL.BioSeqDatabase.DBServer-class.html#values
BioSQL.BioSeqDatabase.DBServer.__repr__	BioSQL.BioSeqDatabase.DBServer-class.html#__repr__
BioSQL.BioSeqDatabase.DBServer.remove_database	BioSQL.BioSeqDatabase.DBServer-class.html#remove_database
BioSQL.BioSeqDatabase.DBServer.close	BioSQL.BioSeqDatabase.DBServer-class.html#close
BioSQL.BioSeqDatabase.DBServer.__init__	BioSQL.BioSeqDatabase.DBServer-class.html#__init__
BioSQL.DBUtils.Generic_dbutils	BioSQL.DBUtils.Generic_dbutils-class.html
BioSQL.DBUtils.Generic_dbutils.autocommit	BioSQL.DBUtils.Generic_dbutils-class.html#autocommit
BioSQL.DBUtils.Generic_dbutils.tname	BioSQL.DBUtils.Generic_dbutils-class.html#tname
BioSQL.DBUtils.Generic_dbutils.__init__	BioSQL.DBUtils.Generic_dbutils-class.html#__init__
BioSQL.DBUtils.Generic_dbutils.last_id	BioSQL.DBUtils.Generic_dbutils-class.html#last_id
BioSQL.DBUtils.Mysql_dbutils	BioSQL.DBUtils.Mysql_dbutils-class.html
BioSQL.DBUtils.Generic_dbutils.autocommit	BioSQL.DBUtils.Generic_dbutils-class.html#autocommit
BioSQL.DBUtils.Generic_dbutils.tname	BioSQL.DBUtils.Generic_dbutils-class.html#tname
BioSQL.DBUtils.Generic_dbutils.__init__	BioSQL.DBUtils.Generic_dbutils-class.html#__init__
BioSQL.DBUtils.Mysql_dbutils.last_id	BioSQL.DBUtils.Mysql_dbutils-class.html#last_id
BioSQL.DBUtils.Pgdb_dbutils	BioSQL.DBUtils.Pgdb_dbutils-class.html
BioSQL.DBUtils.Pgdb_dbutils.autocommit	BioSQL.DBUtils.Pgdb_dbutils-class.html#autocommit
BioSQL.DBUtils.Generic_dbutils.tname	BioSQL.DBUtils.Generic_dbutils-class.html#tname
BioSQL.DBUtils.Pgdb_dbutils.next_id	BioSQL.DBUtils.Pgdb_dbutils-class.html#next_id
BioSQL.DBUtils.Generic_dbutils.__init__	BioSQL.DBUtils.Generic_dbutils-class.html#__init__
BioSQL.DBUtils.Pgdb_dbutils.last_id	BioSQL.DBUtils.Pgdb_dbutils-class.html#last_id
BioSQL.DBUtils.Psycopg2_dbutils	BioSQL.DBUtils.Psycopg2_dbutils-class.html
BioSQL.DBUtils.Psycopg2_dbutils.autocommit	BioSQL.DBUtils.Psycopg2_dbutils-class.html#autocommit
BioSQL.DBUtils.Generic_dbutils.tname	BioSQL.DBUtils.Generic_dbutils-class.html#tname
BioSQL.DBUtils.Psycopg_dbutils.next_id	BioSQL.DBUtils.Psycopg_dbutils-class.html#next_id
BioSQL.DBUtils.Generic_dbutils.__init__	BioSQL.DBUtils.Generic_dbutils-class.html#__init__
BioSQL.DBUtils.Psycopg_dbutils.last_id	BioSQL.DBUtils.Psycopg_dbutils-class.html#last_id
BioSQL.DBUtils.Psycopg_dbutils	BioSQL.DBUtils.Psycopg_dbutils-class.html
BioSQL.DBUtils.Psycopg_dbutils.autocommit	BioSQL.DBUtils.Psycopg_dbutils-class.html#autocommit
BioSQL.DBUtils.Generic_dbutils.tname	BioSQL.DBUtils.Generic_dbutils-class.html#tname
BioSQL.DBUtils.Psycopg_dbutils.next_id	BioSQL.DBUtils.Psycopg_dbutils-class.html#next_id
BioSQL.DBUtils.Generic_dbutils.__init__	BioSQL.DBUtils.Generic_dbutils-class.html#__init__
BioSQL.DBUtils.Psycopg_dbutils.last_id	BioSQL.DBUtils.Psycopg_dbutils-class.html#last_id
BioSQL.Loader.DatabaseLoader	BioSQL.Loader.DatabaseLoader-class.html
BioSQL.Loader.DatabaseLoader._get_seqfeature_dbxref	BioSQL.Loader.DatabaseLoader-class.html#_get_seqfeature_dbxref
BioSQL.Loader.DatabaseLoader._load_bioentry_table	BioSQL.Loader.DatabaseLoader-class.html#_load_bioentry_table
BioSQL.Loader.DatabaseLoader._get_dbxref_id	BioSQL.Loader.DatabaseLoader-class.html#_get_dbxref_id
BioSQL.Loader.DatabaseLoader.__init__	BioSQL.Loader.DatabaseLoader-class.html#__init__
BioSQL.Loader.DatabaseLoader._load_comment	BioSQL.Loader.DatabaseLoader-class.html#_load_comment
BioSQL.Loader.DatabaseLoader._load_annotations	BioSQL.Loader.DatabaseLoader-class.html#_load_annotations
BioSQL.Loader.DatabaseLoader._load_seqfeature_qualifiers	BioSQL.Loader.DatabaseLoader-class.html#_load_seqfeature_qualifiers
BioSQL.Loader.DatabaseLoader._load_seqfeature	BioSQL.Loader.DatabaseLoader-class.html#_load_seqfeature
BioSQL.Loader.DatabaseLoader._add_bioentry_dbxref	BioSQL.Loader.DatabaseLoader-class.html#_add_bioentry_dbxref
BioSQL.Loader.DatabaseLoader._insert_seqfeature_location	BioSQL.Loader.DatabaseLoader-class.html#_insert_seqfeature_location
BioSQL.Loader.DatabaseLoader._get_taxon_id_from_ncbi_lineage	BioSQL.Loader.DatabaseLoader-class.html#_get_taxon_id_from_ncbi_lineage
BioSQL.Loader.DatabaseLoader._load_seqfeature_basic	BioSQL.Loader.DatabaseLoader-class.html#_load_seqfeature_basic
BioSQL.Loader.DatabaseLoader._load_seqfeature_dbxref	BioSQL.Loader.DatabaseLoader-class.html#_load_seqfeature_dbxref
BioSQL.Loader.DatabaseLoader._get_term_id	BioSQL.Loader.DatabaseLoader-class.html#_get_term_id
BioSQL.Loader.DatabaseLoader._get_ontology_id	BioSQL.Loader.DatabaseLoader-class.html#_get_ontology_id
BioSQL.Loader.DatabaseLoader._get_taxon_id_from_ncbi_taxon_id	BioSQL.Loader.DatabaseLoader-class.html#_get_taxon_id_from_ncbi_taxon_id
BioSQL.Loader.DatabaseLoader._load_biosequence	BioSQL.Loader.DatabaseLoader-class.html#_load_biosequence
BioSQL.Loader.DatabaseLoader._add_dbxref	BioSQL.Loader.DatabaseLoader-class.html#_add_dbxref
BioSQL.Loader.DatabaseLoader._load_seqfeature_locations	BioSQL.Loader.DatabaseLoader-class.html#_load_seqfeature_locations
BioSQL.Loader.DatabaseLoader._get_taxon_id	BioSQL.Loader.DatabaseLoader-class.html#_get_taxon_id
BioSQL.Loader.DatabaseLoader._load_dbxrefs	BioSQL.Loader.DatabaseLoader-class.html#_load_dbxrefs
BioSQL.Loader.DatabaseLoader._load_reference	BioSQL.Loader.DatabaseLoader-class.html#_load_reference
BioSQL.Loader.DatabaseLoader._get_bioentry_dbxref	BioSQL.Loader.DatabaseLoader-class.html#_get_bioentry_dbxref
BioSQL.Loader.DatabaseLoader._load_bioentry_date	BioSQL.Loader.DatabaseLoader-class.html#_load_bioentry_date
BioSQL.Loader.DatabaseLoader._fix_name_class	BioSQL.Loader.DatabaseLoader-class.html#_fix_name_class
BioSQL.Loader.DatabaseLoader.load_seqrecord	BioSQL.Loader.DatabaseLoader-class.html#load_seqrecord
BioSQL.Loader.DatabaseLoader._add_seqfeature_dbxref	BioSQL.Loader.DatabaseLoader-class.html#_add_seqfeature_dbxref
BioSQL.Loader.DatabaseRemover	BioSQL.Loader.DatabaseRemover-class.html
BioSQL.Loader.DatabaseRemover.remove	BioSQL.Loader.DatabaseRemover-class.html#remove
BioSQL.Loader.DatabaseRemover.__init__	BioSQL.Loader.DatabaseRemover-class.html#__init__
