Package Bio :: Package Blast :: Module Applications :: Class _BlastCommandLine

Class _BlastCommandLine

                     object --+    
                              |    
Application.AbstractCommandline --+
                                  |
                                 _BlastCommandLine

Known Subclasses:

Base Commandline object for NCBI BLAST wrappers (PRIVATE).

This is provided for subclassing, it deals with shared options common to all the BLAST tools (blastall, rpsblast, pgpblast).

Instance Methods

[hide private]

__init__(self, cmd=None, **kwargs)
Create a new instance of a command line wrapper object.

source code

Inherited from Application.AbstractCommandline: __repr__, __str__, set_parameter

Inherited from Application.AbstractCommandline (private): _check_value, _clear_parameter, _get_parameter, _validate

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __subclasshook__

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

init(self, cmd=None, **kwargs)
(Constructor)

source code

Create a new instance of a command line wrapper object.

Overrides: object.__init__: (inherited documentation)

Class _BlastCommandLine

__init__(self, cmd=None, **kwargs) (Constructor)

init(self, cmd=None, **kwargs)
(Constructor)